FvH4_4g27830

Lysine histidine

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
28640940 .. 28643197
2258 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g27830.t1

Sequence Viewer

Length: 1212 bp
ATGGTTTCAACTTCTCCTCCTCCAAAGCAGCAGGAAGCTCTTTCAGACAACAAATGGAAGGAGGAGGCAGACAACACATGCCGCGCCAAATGGTGGTACTCCACCTTCCACACAGTCACCGCCATGATAGGCGCGGGTGTCCTCAGCCTACCATATGCCATGGCCTACTTAGGATGGGGTCCGGGGACAATGGTACTGGCAGTTTCTTGGTGCATGACCTTGAACACCATGTGGCAGATGATACAACTCCATGAATGTGTTCCAGGGGTTCGCTTTGATCGGTACATAGACCTCGGTCGACATGCCTTCGGTCCTAAACTCGGGCCATGGATCGTGCTTCCACAGCAGCTAATCGTCCAAATTGGGTGTGACATAGTGTACATGGTCACTGGGGGAAAGTGTCTGAAGCAGTTCATGGAGATGGCGTGCTCTAGTTGCACACCAATCAAGCAATCCTACTGGATTTTGATGTTTGGTTCCATTCATTTCTTCCTTTCCCAGCTTCCCAACTTCAACTCTGTCGCTGGTGTTTCGCTAGCAGCAGCTATCATGTCACTAAGTTATTCCACAATAGCTTGGGCAGGTTGCTTAAGTAAAGGCCCGGTAGATAATGTTAGCTACGCATACAAGAAAACAAGATCAGTCGATTACATGTTCCGGGTGTTCAATTCACTTGGTCAAATCTCGTTTGCATTTGCCGGACATGCTGTGGCTCTTGAAATTCAGGCAACAATGCCATCAACTCCGGAGAGGCCTTCAAGAATACCGATGTGGAAAGGTGCCGTCGGAGCCTATATTATTAATGCAATTTGCTATTTCCCGGTGGCCCTGATCGGTTACTGGGCTTTTGGGCAAGATGTTGCTGATAATGTCCTAGTGGACCTCAAGAGACCTGCTTGGCTAATTGCATCTGCAAATTTAATGGTTGTTGTCCATGTTATTGGCAGCTATCAGGTTTTTGCTATGCCGGTTTTTGACTTGTTAGAGAGGATGATGATGAAAAAACTGAACTTCCCACCTGGAGTGGCACTTAGACTAGTTGCTAGATCAGCTTATGTTGTCTTCAACAAGAAAGTAATCATCTCGAGCATGAAAATTTTACAGCTTCCTACTATAATGTGGCTAGCTATCAAGAAACTGAAGAGATTCAGCACCAATTGGTTCGTCAACTGGGCTTCCATATTCGGTGGAGTGTTGTGTTCATTATGTTAG

Protein Analysis

404

Amino Acids

45.0

Weight (kDa)

9.34

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 29 - 355 1.7e-80 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 31 - 160 6.5e-07 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011639)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 572, 901
AccB1I GGYRCC 1 cut(s) 779
AccB7I CCANNNNNTGG 1 cut(s) 93
AccI GTMKAC 1 cut(s) 298
AccII CGCG 2 cut(s) 84, 134
AccIII TCCGGA 1 cut(s) 745
AciI CCGC 3 cut(s) 82, 120, 134
AclWI GGATC 1 cut(s) 338
AcsI RAATTY 3 cut(s) 720, 916, 1095
AcuI CTGAAG 2 cut(s) 425, 1160
AdeI CACNNNGTG 1 cut(s) 231
AfaI GTAC 4 cut(s) 98, 195, 284, 380
AfiI CCNNNNNNNGG 2 cut(s) 93, 320
AflII CTTAAG 1 cut(s) 589
AflIII ACRYGT 1 cut(s) 651
AgsI TTSAA 7 cut(s) 9, 223, 514, 667, 719, 759, 1066
AhlI ACTAGT 1 cut(s) 1036
AjnI CCWGG 2 cut(s) 262, 1018
Alw21I GWGCWC 1 cut(s) 431
Alw26I GTCTC 1 cut(s) 883
AlwI GGATC 1 cut(s) 338
Ama87I CYCGRG 2 cut(s) 320, 1084
Aor13HI TCCGGA 1 cut(s) 745
AoxI GGCC 5 cut(s) 162, 323, 598, 752, 825
ApeKI GCWGC 5 cut(s) 28, 346, 539, 542, 945
ApoI RAATTY 3 cut(s) 720, 916, 1095
AseI ATTAAT 1 cut(s) 801
Asp700I GAANNNNTTC 3 cut(s) 258, 410, 1145
AspLEI GCGC 2 cut(s) 86, 134
AspS9I GGNCC 6 cut(s) 179, 311, 323, 599, 826, 880
AsuC2I CCSGG 4 cut(s) 183, 602, 659, 821
AsuHPI GGTGA 1 cut(s) 109
AsuNHI GCTAGC 2 cut(s) 535, 1123
AvaI CYCGRG 2 cut(s) 320, 1084
AvaII GGWCC 3 cut(s) 179, 311, 880
BanI GGYRCC 1 cut(s) 779
BarI GAAGNNNNNNTAC 2 cut(s) 89, 121
BbsI GAAGAC 1 cut(s) 1054
Bbv12I GWGCWC 1 cut(s) 431
BbvCI CCTCAGC 1 cut(s) 143
BbvI GCAGC 5 cut(s) 40, 358, 551, 554, 957
BccI CCATC 3 cut(s) 168, 415, 745
BceAI ACGGC 1 cut(s) 767
BciT130I CCWGG 2 cut(s) 264, 1020
BcnI CCSGG 4 cut(s) 183, 602, 659, 821
BcoDI GTCTC 1 cut(s) 883
BcuI ACTAGT 1 cut(s) 1036
BfaI CTAG 6 cut(s) 432, 536, 875, 1037, 1044, 1124
BfrI CTTAAG 1 cut(s) 589
BfuAI ACCTGC 2 cut(s) 572, 901
BisI GCNGC 6 cut(s) 29, 82, 347, 540, 543, 946
BlsI GCNGC 6 cut(s) 30, 83, 348, 541, 544, 947
Bme1390I CCNGG 6 cut(s) 183, 264, 602, 659, 821, 1020
Bme18I GGWCC 3 cut(s) 179, 311, 880
BmeT110I CYCGRG 2 cut(s) 320, 1084
BmgT120I GGNCC 6 cut(s) 179, 311, 323, 599, 826, 880
BmiI GGNNCC 4 cut(s) 180, 478, 781, 790
BmrFI CCNGG 6 cut(s) 183, 264, 602, 659, 821, 1020
BmrI ACTGGG 3 cut(s) 399, 850, 1180
BmsI GCATC 1 cut(s) 917
BmtI GCTAGC 2 cut(s) 539, 1127
BmuI ACTGGG 3 cut(s) 399, 850, 1180
BoxI GACNNNNGTC 1 cut(s) 294
BpiI GAAGAC 1 cut(s) 1054
BpmI CTGGAG 1 cut(s) 1041
Bpu10I CCTNAGC 1 cut(s) 143
BpuEI CTTGAG 1 cut(s) 869
BpuMI CCSGG 4 cut(s) 183, 602, 659, 821
BsaI GGTCTC 1 cut(s) 883
BsaJI CCNNGG 5 cut(s) 159, 182, 263, 292, 326
BsaWI WCCGGW 1 cut(s) 745
BsaXI ACNNNNNCTCC 3 cut(s) 31, 410, 440
Bsc4I CCNNNNNNNGG 2 cut(s) 93, 320
Bse118I RCCGGY 1 cut(s) 967
Bse1I ACTGG 5 cut(s) 201, 394, 464, 845, 1175
BseAI TCCGGA 1 cut(s) 745
BseBI CCWGG 2 cut(s) 264, 1020
BseDI CCNNGG 5 cut(s) 159, 182, 263, 292, 326
BseGI GGATG 2 cut(s) 179, 996
BseLI CCNNNNNNNGG 2 cut(s) 93, 320
BseMII CTCAG 1 cut(s) 157
BseNI ACTGG 5 cut(s) 201, 394, 464, 845, 1175
BseRI GAGGAG 3 cut(s) 6, 9, 77
BseXI GCAGC 5 cut(s) 40, 358, 551, 554, 957
BseYI CCCAGC 1 cut(s) 498
Bsh1236I CGCG 2 cut(s) 84, 134
Bsh1285I CGRYCG 1 cut(s) 298
BshFI GGCC 5 cut(s) 164, 325, 600, 754, 827
BshNI GGYRCC 1 cut(s) 779
BsiEI CGRYCG 1 cut(s) 298
BsiHKAI GWGCWC 1 cut(s) 431
BsiHKCI CYCGRG 2 cut(s) 320, 1084
BsiSI CCGG 7 cut(s) 182, 602, 658, 699, 746, 821, 968
BslFI GGGAC 1 cut(s) 199
BslI CCNNNNNNNGG 2 cut(s) 93, 320
BsmAI GTCTC 1 cut(s) 883
BsmFI GGGAC 1 cut(s) 199
BsnI GGCC 5 cut(s) 164, 325, 600, 754, 827
Bso31I GGTCTC 1 cut(s) 883
BsoBI CYCGRG 2 cut(s) 320, 1084
Bsp1286I GDGCHC 1 cut(s) 431
Bsp13I TCCGGA 1 cut(s) 745
Bsp1407I TGTACA 1 cut(s) 378
Bsp143I GATC 5 cut(s) 277, 330, 638, 831, 1046
Bsp19I CCATGG 2 cut(s) 159, 326
BspACI CCGC 3 cut(s) 82, 120, 134
BspANI GGCC 5 cut(s) 164, 325, 600, 754, 827
BspCNI CTCAG 1 cut(s) 156
BspEI TCCGGA 1 cut(s) 745
BspFNI CGCG 2 cut(s) 84, 134
BspLI GGNNCC 4 cut(s) 180, 478, 781, 790
BspMI ACCTGC 2 cut(s) 572, 901
BspOI GCTAGC 2 cut(s) 539, 1127
BspPI GGATC 1 cut(s) 338
BspT107I GGYRCC 1 cut(s) 779
BspTI CTTAAG 1 cut(s) 589
BspTNI GGTCTC 1 cut(s) 883
BsrFI RCCGGY 1 cut(s) 967
BsrGI TGTACA 1 cut(s) 378
BsrI ACTGG 5 cut(s) 201, 394, 464, 845, 1175
BssAI RCCGGY 1 cut(s) 967
BssECI CCNNGG 5 cut(s) 159, 182, 263, 292, 326
BssMI GATC 5 cut(s) 277, 330, 638, 831, 1046
BssT1I CCWWGG 2 cut(s) 159, 326
Bst2UI CCWGG 2 cut(s) 264, 1020
Bst4CI ACNGT 1 cut(s) 115
Bst6I CTCTTC 1 cut(s) 1136
BstAFI CTTAAG 1 cut(s) 589
BstAUI TGTACA 1 cut(s) 378
BstC8I GCNNGC 3 cut(s) 427, 537, 1125
BstDEI CTNAG 4 cut(s) 143, 169, 557, 1031
BstDSI CCRYGG 2 cut(s) 159, 326
BstF5I GGATG 2 cut(s) 179, 996
BstFNI CGCG 2 cut(s) 84, 134
BstHHI GCGC 2 cut(s) 86, 134
BstKTI GATC 5 cut(s) 280, 333, 641, 834, 1049
BstMAI GTCTC 1 cut(s) 883
BstMBI GATC 5 cut(s) 277, 330, 638, 831, 1046
BstMCI CGRYCG 1 cut(s) 298
BstMWI GCNNNNNNNGC 5 cut(s) 343, 435, 704, 788, 1049
BstNI CCWGG 2 cut(s) 264, 1020
BstNSI RCATGY 4 cut(s) 81, 305, 655, 707
BstPAI GACNNNNGTC 1 cut(s) 294
BstSCI CCNGG 6 cut(s) 181, 262, 600, 657, 819, 1018
BstUI CGCG 2 cut(s) 84, 134
BstV1I GCAGC 5 cut(s) 40, 358, 551, 554, 957
BstV2I GAAGAC 1 cut(s) 1054
BstXI CCANNNNNNTGG 1 cut(s) 941
BsuRI GGCC 5 cut(s) 164, 325, 600, 754, 827
BtgI CCRYGG 2 cut(s) 159, 326
BtsCI GGATG 2 cut(s) 179, 996
BtsIMutI CAGTG 1 cut(s) 387
BveI ACCTGC 2 cut(s) 572, 901
Cac8I GCNNGC 3 cut(s) 427, 537, 1125
CfoI GCGC 2 cut(s) 86, 134
Cfr10I RCCGGY 1 cut(s) 967
Cfr13I GGNCC 6 cut(s) 179, 311, 323, 599, 826, 880
Csp6I GTAC 4 cut(s) 97, 194, 283, 379
CviQI GTAC 4 cut(s) 97, 194, 283, 379
DdeI CTNAG 4 cut(s) 143, 169, 557, 1031
DpnI GATC 5 cut(s) 279, 332, 640, 833, 1048
DpnII GATC 5 cut(s) 277, 330, 638, 831, 1046
DraIII CACNNNGTG 1 cut(s) 231
Eam1104I CTCTTC 1 cut(s) 1136
EarI CTCTTC 1 cut(s) 1136
Eco130I CCWWGG 2 cut(s) 159, 326
Eco147I AGGCCT 1 cut(s) 754
Eco31I GGTCTC 1 cut(s) 883
Eco47I GGWCC 3 cut(s) 179, 311, 880
Eco57I CTGAAG 2 cut(s) 425, 1160
Eco88I CYCGRG 2 cut(s) 320, 1084
EcoRII CCWGG 2 cut(s) 262, 1018
EcoT14I CCWWGG 2 cut(s) 159, 326
ErhI CCWWGG 2 cut(s) 159, 326
FaqI GGGAC 1 cut(s) 199
FauI CCCGC 1 cut(s) 127
FauNDI CATATG 1 cut(s) 154
FblI GTMKAC 1 cut(s) 298
Fnu4HI GCNGC 6 cut(s) 29, 82, 347, 540, 543, 946
FokI GGATG 2 cut(s) 186, 1003
Fsp4HI GCNGC 6 cut(s) 29, 82, 347, 540, 543, 946
FspBI CTAG 6 cut(s) 432, 536, 875, 1037, 1044, 1124
GlaI GCGC 2 cut(s) 85, 133
GluI GCNGC 6 cut(s) 29, 82, 347, 540, 543, 946
GsaI CCCAGC 1 cut(s) 502
GsuI CTGGAG 1 cut(s) 1041
HaeIII GGCC 5 cut(s) 164, 325, 600, 754, 827
HapII CCGG 7 cut(s) 182, 602, 658, 699, 746, 821, 968
HhaI GCGC 2 cut(s) 86, 134
Hin6I GCGC 2 cut(s) 84, 132
HinP1I GCGC 2 cut(s) 84, 132
HincII GTYRAC 2 cut(s) 299, 1168
HindII GTYRAC 2 cut(s) 299, 1168
HinfI GANTC 1 cut(s) 1146
HpaII CCGG 7 cut(s) 182, 602, 658, 699, 746, 821, 968
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 4 cut(s) 299, 379, 880, 1168
Hpy188I TCNGA 3 cut(s) 46, 405, 788
Hpy188III TCNNGA 6 cut(s) 716, 746, 759, 886, 1084, 1132
Hpy8I GTNNAC 4 cut(s) 299, 379, 880, 1168
Hpy99I CGWCG 1 cut(s) 788
HpyAV CCTTC 4 cut(s) 52, 115, 316, 765
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 6 cut(s) 213, 438, 692, 806, 908, 914
HpyF10VI GCNNNNNNNGC 5 cut(s) 343, 435, 704, 788, 1049
HpyF3I CTNAG 4 cut(s) 143, 169, 557, 1031
HspAI GCGC 2 cut(s) 84, 132
Kpn2I TCCGGA 1 cut(s) 745
Kzo9I GATC 5 cut(s) 277, 330, 638, 831, 1046
LmnI GCTCC 1 cut(s) 788
Lsp1109I GCAGC 5 cut(s) 40, 358, 551, 554, 957
LweI GCATC 1 cut(s) 917
MaeI CTAG 6 cut(s) 432, 536, 875, 1037, 1044, 1124
MaeIII GTNAC 5 cut(s) 115, 368, 385, 552, 836
MalI GATC 5 cut(s) 279, 332, 640, 833, 1048
MboI GATC 5 cut(s) 277, 330, 638, 831, 1046
MboII GAAGA 3 cut(s) 481, 1054, 1153
MfeI CAATTG 1 cut(s) 1156
MhlI GDGCHC 1 cut(s) 431
MluCI AATT 8 cut(s) 360, 667, 720, 807, 903, 916, 1095, 1156
MmeI TCCRAC 1 cut(s) 766
MnlI CCTC 9 cut(s) 27, 30, 55, 58, 152, 302, 744, 893, 981
MroI TCCGGA 1 cut(s) 745
MroXI GAANNNNTTC 3 cut(s) 258, 410, 1145
MseI TTAA 3 cut(s) 590, 801, 920
MslI CAYNNNNRTG 3 cut(s) 122, 255, 419
MspCI CTTAAG 1 cut(s) 589
MspI CCGG 7 cut(s) 182, 602, 658, 699, 746, 821, 968
MspR9I CCNGG 6 cut(s) 183, 264, 602, 659, 821, 1020
MunI CAATTG 1 cut(s) 1156
MvaI CCWGG 2 cut(s) 264, 1020
MvnI CGCG 2 cut(s) 84, 134
MwoI GCNNNNNNNGC 5 cut(s) 343, 435, 704, 788, 1049
NciI CCSGG 4 cut(s) 183, 602, 659, 821
NcoI CCATGG 2 cut(s) 159, 326
NdeI CATATG 1 cut(s) 154
NdeII GATC 5 cut(s) 277, 330, 638, 831, 1046
NheI GCTAGC 2 cut(s) 535, 1123
NlaIV GGNNCC 4 cut(s) 180, 478, 781, 790
NmuCI GTSAC 4 cut(s) 115, 368, 385, 552
NspI RCATGY 4 cut(s) 81, 305, 655, 707
PaeR7I CTCGAG 1 cut(s) 1084
PceI AGGCCT 1 cut(s) 754
PciI ACATGT 1 cut(s) 651
PdmI GAANNNNTTC 3 cut(s) 258, 410, 1145
PfeI GAWTC 1 cut(s) 1146
PflMI CCANNNNNTGG 1 cut(s) 93
PkrI GCNGC 6 cut(s) 30, 83, 348, 541, 544, 947
PscI ACATGT 1 cut(s) 651
PshAI GACNNNNGTC 1 cut(s) 294
PshBI ATTAAT 1 cut(s) 801
Psp6I CCWGG 2 cut(s) 262, 1018
PspFI CCCAGC 1 cut(s) 498
PspGI CCWGG 2 cut(s) 262, 1018
PspN4I GGNNCC 4 cut(s) 180, 478, 781, 790
PspPI GGNCC 6 cut(s) 179, 311, 323, 599, 826, 880
RsaI GTAC 4 cut(s) 98, 195, 284, 380
RsaNI GTAC 4 cut(s) 97, 194, 283, 379
RseI CAYNNNNRTG 3 cut(s) 122, 255, 419
SalI GTCGAC 1 cut(s) 297
SaqAI TTAA 3 cut(s) 590, 801, 920
SatI GCNGC 6 cut(s) 29, 82, 347, 540, 543, 946
Sau3AI GATC 5 cut(s) 277, 330, 638, 831, 1046
Sau96I GGNCC 6 cut(s) 179, 311, 323, 599, 826, 880
ScrFI CCNGG 6 cut(s) 183, 264, 602, 659, 821, 1020
SduI GDGCHC 1 cut(s) 431
SfaNI GCATC 1 cut(s) 917
Sfr274I CTCGAG 1 cut(s) 1084
SinI GGWCC 3 cut(s) 179, 311, 880
SlaI CTCGAG 1 cut(s) 1084
SmiMI CAYNNNNRTG 3 cut(s) 122, 255, 419
SmlI CTYRAG 3 cut(s) 589, 884, 1084
SmoI CTYRAG 3 cut(s) 589, 884, 1084
SpeI ACTAGT 1 cut(s) 1036
Sse9I AATT 8 cut(s) 360, 667, 720, 807, 903, 916, 1095, 1156
SseBI AGGCCT 1 cut(s) 754
SsiI CCGC 3 cut(s) 82, 120, 134
SspMI CTAG 6 cut(s) 432, 536, 875, 1037, 1044, 1124
StuI AGGCCT 1 cut(s) 754
StyD4I CCNGG 6 cut(s) 181, 262, 600, 657, 819, 1018
StyI CCWWGG 2 cut(s) 159, 326
TaaI ACNGT 1 cut(s) 115
TaqI TCGA 3 cut(s) 298, 645, 1085
TaqII GACCGA 2 cut(s) 284, 299
TasI AATT 8 cut(s) 360, 667, 720, 807, 903, 916, 1095, 1156
TatI WGTACW 1 cut(s) 378
TauI GCSGC 1 cut(s) 84
TfiI GAWTC 1 cut(s) 1146
Tru1I TTAA 3 cut(s) 590, 801, 920
Tru9I TTAA 3 cut(s) 590, 801, 920
TscAI CASTG 1 cut(s) 394
TseFI GTSAC 4 cut(s) 115, 368, 385, 552
TseI GCWGC 5 cut(s) 28, 346, 539, 542, 945
Tsp45I GTSAC 4 cut(s) 115, 368, 385, 552
TspDTI ATGAA 6 cut(s) 267, 403, 473, 1013, 1106, 1191
TspRI CASTG 1 cut(s) 394
Van91I CCANNNNNTGG 1 cut(s) 93
Vha464I CTTAAG 1 cut(s) 589
VpaK11BI GGWCC 3 cut(s) 179, 311, 880
VspI ATTAAT 1 cut(s) 801
XapI RAATTY 3 cut(s) 720, 916, 1095
XceI RCATGY 4 cut(s) 81, 305, 655, 707
XhoI CTCGAG 1 cut(s) 1084
XmiI GTMKAC 1 cut(s) 298
XmnI GAANNNNTTC 3 cut(s) 258, 410, 1145
XspI CTAG 6 cut(s) 432, 536, 875, 1037, 1044, 1124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.