AT1G27070

Glycogen recognition site of AMP-activated protein kinase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
9396658 .. 9399500
2843 bp
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UTR
Exon/CDS
Intron
AT1G27070.1

Sequence Viewer

Length: 1599 bp
ATGGTCTCTATCAACTCCGGCCCCATTTCATCTTTTGTTTCTCGCTATTCGATGATTGATTCCGATACCCTTTTGCATCTTTCTTCTTTTGGTTCAACTTTTAATCCCAATTATAAGGCCAAAGCTTGCATACGTTTTGCAAGAAAAGTTTGTGGGTCTACTGTTCTAGGGTTTCTTGAGGTGAAGCCGAGGAAGAAAAGTTGTTGTTCTCGTTGTAATGGGGTTTCGAGGATGTGTAATAAGCGTAATTTGGGTTGGGATAGCGAGGGAAGTAAGGATCTTGAAACCGAGATTTTGGAGTTTATGAAGAATTCGGAGAAACCTGGGATGTTTCCGAGTAAGAAGGATTTGATTCGTTCTGGAAGATTTGATCTTGTGGAGAGAATTGTAAACCAAGGTGGATGGCTTTCTATGGGATGGGATTTGGATGAACAAGAAGAGAAGGTCCGAGTAAATGAGAACGTGACGCCACAGGATTTACATATCGAGAAACAGCTTCCTAATTGTAATTCTCCAGAAATGGATAAAACTTTGAATCATGGAGATCTTGATCTTTCCTCAAATCTTTCATCTTCGACAGAACAAGTGGAATCTAGAAACGATAGTGGAATTGAAGGCATTTTGACCAGATTGGAGAAAGAAAGGAATTTGAGTCTAGGGATTAGCGTGAGGGAGAATGGGAAAAGCAATGGTGCCATGCATGATATCTCCCCAAATGGTTCAGTTCCTTGGTCTTCCAGGATTGTGACAGCTAGTGAAATTCAAGAAGTCGACGGCAGTAGAGGCTCAGGTGAATATGCACAAAGTAGGTATCAAGGAGCCAAGTCGGTTTCAGGAAAGCCAGGCTTAAGCGATTCACCTACGTCAGAAACATGGAGGACGTGGAGTATGAGAAGAGCTGGATTTACTGATGAAGATTTTGAAGCTGCTGAAATTTCCTCCAGTGGTTTGACTGGTGTGAAGAAAGATGATACGAAGAAGGATTCTGGTGATAGCATGAATGGGAAAGATAGAATTGCATCTTCCTCAGAAGATGTAAATAAAACTCATATCAAACACCGTCTTCAACAGCTCCAGTCAGAACTTTCTTCTGTTCTTCACTCCCTTAGATCTCCTCCTGATAAAGTTGTGACAAGTAAGGATAGTGAGACAACTGCTGGGAACTTGGAGAACCTCTCTGATGATTGGGAGTACAAAGAGAATGAGATCATACATGCCCAAAATAAGTTGCGGTCTACACGAGCAAAGTTGGCTGTTCTTGAAGGAAAAATGGCTATGGCTATAATAGATGCACAGAGGATTGTACGGGAGAAACAGAGAAGAATAGATCATGCTAGTAGAGCTTTACGATTACTTCGAACTGCATCCATAGTGTGGCCTAATTCAGCCTCAGAAGTTCTATTAACGGGTTCATTTGACGGTTGGTCTACCCAGAGGAAGATGAAGAAAGCTGAGAACGGAGTCTTCTCTTTGTCTCTAAAGCTATATCCTGGAAAATATGAGATAAAGTTTATAGTTGATGGCCAGTGGAAAGTTGACCCGCTTCGACCCATTGTTACTAGTGGTGGATATGAAAACAATCTGCTAATCATCTCTTGA

Protein Analysis

532

Amino Acids

59.2

Weight (kDa)

8.3

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMPK1_CBM PF16561 456 - 529 3.4e-18 Glycogen recognition site of AMP-activated protein kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 114
AccB1I GGYRCC 1 cut(s) 692
AccB7I CCANNNNNTGG 1 cut(s) 1374
AccI GTMKAC 4 cut(s) 158, 771, 1235, 1427
AciI CCGC 2 cut(s) 1231, 1541
AclWI GGATC 1 cut(s) 285
AcoI YGGCCR 1 cut(s) 1522
AcsI RAATTY 4 cut(s) 310, 646, 759, 933
AcyI GRCGYC 1 cut(s) 467
AfaI GTAC 2 cut(s) 1193, 1305
AfiI CCNNNNNNNGG 1 cut(s) 1374
AflII CTTAAG 1 cut(s) 847
AgsI TTSAA 8 cut(s) 96, 284, 535, 614, 764, 923, 1067, 1262
AhdI GACNNNNNGTC 1 cut(s) 1423
AhlI ACTAGT 1 cut(s) 1559
AjiI CACGTC 1 cut(s) 882
AjnI CCWGG 4 cut(s) 322, 737, 841, 1489
AluBI AGCT 9 cut(s) 125, 496, 752, 899, 926, 1072, 1343, 1451, 1483
AluI AGCT 9 cut(s) 125, 496, 752, 899, 926, 1072, 1343, 1451, 1483
Alw26I GTCTC 3 cut(s) 10, 1142, 1479
AlwI GGATC 1 cut(s) 285
AoxI GGCC 4 cut(s) 19, 117, 1376, 1522
ApeKI GCWGC 1 cut(s) 926
ApoI RAATTY 4 cut(s) 310, 646, 759, 933
AspS9I GGNCC 2 cut(s) 20, 445
AsuHPI GGTGA 4 cut(s) 193, 803, 849, 1001
AsuII TTCGAA 1 cut(s) 1357
AvaII GGWCC 1 cut(s) 445
BalI TGGCCA 1 cut(s) 1524
BanI GGYRCC 1 cut(s) 692
BauI CACGAG 1 cut(s) 1239
BbsI GAAGAC 3 cut(s) 726, 1055, 1456
BbvI GCAGC 1 cut(s) 913
BccI CCATC 3 cut(s) 396, 411, 1514
BceAI ACGGC 1 cut(s) 790
BciT130I CCWGG 4 cut(s) 324, 739, 843, 1491
BcoDI GTCTC 3 cut(s) 10, 1142, 1479
BcuI ACTAGT 1 cut(s) 1559
BfaI CTAG 6 cut(s) 167, 594, 656, 753, 1335, 1560
BfrI CTTAAG 1 cut(s) 847
BglII AGATCT 2 cut(s) 544, 1109
BisI GCNGC 1 cut(s) 927
BlsI GCNGC 1 cut(s) 928
Bme1390I CCNGG 4 cut(s) 324, 739, 843, 1491
Bme18I GGWCC 1 cut(s) 445
BmeRI GACNNNNNGTC 1 cut(s) 1423
BmgBI CACGTC 1 cut(s) 882
BmgT120I GGNCC 2 cut(s) 20, 445
BmiI GGNNCC 3 cut(s) 22, 694, 820
BmrFI CCNGG 4 cut(s) 324, 739, 843, 1491
BmsI GCATC 4 cut(s) 85, 1028, 1279, 1373
BpiI GAAGAC 3 cut(s) 726, 1055, 1456
BplI GAGNNNNNCTC 2 cut(s) 1160, 1192
BpmI CTGGAG 3 cut(s) 498, 925, 1058
Bpu10I CCTNAGC 1 cut(s) 787
Bpu14I TTCGAA 1 cut(s) 1357
BpuEI CTTGAG 1 cut(s) 197
BsaBI GATNNNNATC 1 cut(s) 549
BsaHI GRCGYC 1 cut(s) 467
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 4 cut(s) 188, 323, 394, 728
Bsc4I CCNNNNNNNGG 1 cut(s) 1374
Bse1I ACTGG 4 cut(s) 942, 958, 1075, 1525
Bse3DI GCAATG 1 cut(s) 694
Bse8I GATNNNNATC 1 cut(s) 549
BseBI CCWGG 4 cut(s) 324, 739, 843, 1491
BseDI CCNNGG 4 cut(s) 188, 323, 394, 728
BseGI GGATG 6 cut(s) 237, 333, 407, 422, 433, 1364
BseJI GATNNNNATC 1 cut(s) 549
BseLI CCNNNNNNNGG 1 cut(s) 1374
BseMI GCAATG 1 cut(s) 694
BseMII CTCAG 4 cut(s) 801, 1041, 1404, 1443
BseNI ACTGG 4 cut(s) 942, 958, 1075, 1525
BseRI GAGGAG 1 cut(s) 1104
BseXI GCAGC 1 cut(s) 913
BseYI CCCAGC 1 cut(s) 1157
BshFI GGCC 4 cut(s) 21, 119, 1378, 1524
BshNI GGYRCC 1 cut(s) 692
BsiSI CCGG 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 1374
BsmAI GTCTC 3 cut(s) 10, 1142, 1479
BsnI GGCC 4 cut(s) 21, 119, 1378, 1524
Bso31I GGTCTC 1 cut(s) 10
Bsp119I TTCGAA 1 cut(s) 1357
Bsp143I GATC 7 cut(s) 277, 370, 544, 550, 1109, 1206, 1327
BspACI CCGC 2 cut(s) 1231, 1541
BspANI GGCC 4 cut(s) 21, 119, 1378, 1524
BspCNI CTCAG 4 cut(s) 800, 1040, 1403, 1444
BspLI GGNNCC 3 cut(s) 22, 694, 820
BspPI GGATC 1 cut(s) 285
BspQI GCTCTTC 1 cut(s) 889
BspT104I TTCGAA 1 cut(s) 1357
BspT107I GGYRCC 1 cut(s) 692
BspTI CTTAAG 1 cut(s) 847
BspTNI GGTCTC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 694
BsrI ACTGG 4 cut(s) 942, 958, 1075, 1525
BssECI CCNNGG 4 cut(s) 188, 323, 394, 728
BssMI GATC 7 cut(s) 277, 370, 544, 550, 1109, 1206, 1327
BssNI GRCGYC 1 cut(s) 467
BssSI CACGAG 1 cut(s) 1239
BssT1I CCWWGG 2 cut(s) 394, 728
Bst2BI CACGAG 1 cut(s) 1239
Bst2UI CCWGG 4 cut(s) 324, 739, 843, 1491
Bst4CI ACNGT 3 cut(s) 163, 1061, 1421
Bst6I CTCTTC 2 cut(s) 432, 889
BstACI GRCGYC 1 cut(s) 467
BstAFI CTTAAG 1 cut(s) 847
BstBI TTCGAA 1 cut(s) 1357
BstC8I GCNNGC 1 cut(s) 127
BstDEI CTNAG 5 cut(s) 787, 1027, 1106, 1390, 1452
BstF5I GGATG 6 cut(s) 237, 333, 407, 422, 433, 1364
BstKTI GATC 7 cut(s) 280, 373, 547, 553, 1112, 1209, 1330
BstMAI GTCTC 3 cut(s) 10, 1142, 1479
BstMBI GATC 7 cut(s) 277, 370, 544, 550, 1109, 1206, 1327
BstMWI GCNNNNNNNGC 3 cut(s) 783, 1250, 1340
BstNI CCWGG 4 cut(s) 324, 739, 843, 1491
BstNSI RCATGY 1 cut(s) 1217
BstSCI CCNGG 4 cut(s) 322, 737, 841, 1489
BstV1I GCAGC 1 cut(s) 913
BstV2I GAAGAC 3 cut(s) 726, 1055, 1456
BstX2I RGATCY 3 cut(s) 277, 544, 1109
BstYI RGATCY 3 cut(s) 277, 544, 1109
BsuRI GGCC 4 cut(s) 21, 119, 1378, 1524
BtrI CACGTC 1 cut(s) 882
BtsCI GGATG 6 cut(s) 237, 333, 407, 422, 433, 1364
BtsIMutI CAGTG 2 cut(s) 949, 1532
Cac8I GCNNGC 1 cut(s) 127
Cfr13I GGNCC 2 cut(s) 20, 445
CseI GACGC 1 cut(s) 475
Csp6I GTAC 2 cut(s) 1192, 1304
CviAII CATG 7 cut(s) 539, 697, 701, 873, 997, 1214, 1331
CviQI GTAC 2 cut(s) 1192, 1304
DdeI CTNAG 5 cut(s) 787, 1027, 1106, 1390, 1452
DpnI GATC 7 cut(s) 279, 372, 546, 552, 1111, 1208, 1329
DpnII GATC 7 cut(s) 277, 370, 544, 550, 1109, 1206, 1327
DriI GACNNNNNGTC 1 cut(s) 1423
EaeI YGGCCR 1 cut(s) 1522
Eam1104I CTCTTC 2 cut(s) 432, 889
Eam1105I GACNNNNNGTC 1 cut(s) 1423
EarI CTCTTC 2 cut(s) 432, 889
Eco130I CCWWGG 2 cut(s) 394, 728
Eco31I GGTCTC 1 cut(s) 10
Eco32I GATATC 1 cut(s) 706
Eco47I GGWCC 1 cut(s) 445
EcoRI GAATTC 1 cut(s) 310
EcoRII CCWGG 4 cut(s) 322, 737, 841, 1489
EcoRV GATATC 1 cut(s) 706
EcoT14I CCWWGG 2 cut(s) 394, 728
EcoT22I ATGCAT 1 cut(s) 702
ErhI CCWWGG 2 cut(s) 394, 728
FaeI CATG 7 cut(s) 542, 700, 704, 876, 1000, 1217, 1334
FalI AAGNNNNNCTT 2 cut(s) 830, 862
FatI CATG 7 cut(s) 538, 696, 700, 872, 996, 1213, 1330
FauI CCCGC 1 cut(s) 1548
FblI GTMKAC 4 cut(s) 158, 771, 1235, 1427
Fnu4HI GCNGC 1 cut(s) 927
FokI GGATG 6 cut(s) 244, 340, 414, 429, 440, 1351
Fsp4HI GCNGC 1 cut(s) 927
FspBI CTAG 6 cut(s) 167, 594, 656, 753, 1335, 1560
GluI GCNGC 1 cut(s) 927
GsaI CCCAGC 1 cut(s) 1161
GsuI CTGGAG 3 cut(s) 498, 925, 1058
HaeIII GGCC 4 cut(s) 21, 119, 1378, 1524
HapII CCGG 1 cut(s) 18
HgaI GACGC 1 cut(s) 475
Hin1I GRCGYC 1 cut(s) 467
Hin1II CATG 7 cut(s) 542, 700, 704, 876, 1000, 1217, 1334
HincII GTYRAC 2 cut(s) 772, 1537
HindII GTYRAC 2 cut(s) 772, 1537
HindIII AAGCTT 1 cut(s) 123
HinfI GANTC 8 cut(s) 59, 352, 535, 590, 652, 854, 983, 1461
HpaII CCGG 1 cut(s) 18
HphI GGTGA 4 cut(s) 193, 803, 849, 1001
Hpy166II GTNNAC 6 cut(s) 159, 391, 772, 1236, 1428, 1537
Hpy188I TCNGA 9 cut(s) 64, 316, 336, 449, 868, 1030, 1081, 1180, 1393
Hpy8I GTNNAC 6 cut(s) 159, 391, 772, 1236, 1428, 1537
Hpy99I CGWCG 1 cut(s) 776
HpyAV CCTTC 5 cut(s) 337, 436, 608, 973, 1256
HpyCH4III ACNGT 3 cut(s) 163, 1061, 1421
HpyCH4IV ACGT 4 cut(s) 133, 462, 863, 881
HpyCH4V TGCA 8 cut(s) 76, 129, 140, 700, 800, 1019, 1292, 1364
HpyF10VI GCNNNNNNNGC 3 cut(s) 783, 1250, 1340
HpyF3I CTNAG 5 cut(s) 787, 1027, 1106, 1390, 1452
HpySE526I ACGT 4 cut(s) 133, 462, 863, 881
Hsp92I GRCGYC 1 cut(s) 467
Hsp92II CATG 7 cut(s) 542, 700, 704, 876, 1000, 1217, 1334
Kzo9I GATC 7 cut(s) 277, 370, 544, 550, 1109, 1206, 1327
LguI GCTCTTC 1 cut(s) 889
LmnI GCTCC 2 cut(s) 818, 1077
Lsp1109I GCAGC 1 cut(s) 913
LweI GCATC 4 cut(s) 85, 1028, 1279, 1373
MaeI CTAG 6 cut(s) 167, 594, 656, 753, 1335, 1560
MaeII ACGT 4 cut(s) 133, 462, 863, 881
MaeIII GTNAC 4 cut(s) 463, 745, 1129, 1555
MalI GATC 7 cut(s) 279, 372, 546, 552, 1111, 1208, 1329
MboI GATC 7 cut(s) 277, 370, 544, 550, 1109, 1206, 1327
MflI RGATCY 3 cut(s) 277, 544, 1109
MlsI TGGCCA 1 cut(s) 1524
MluNI TGGCCA 1 cut(s) 1524
MlyI GAGTC 2 cut(s) 661, 1470
Mox20I TGGCCA 1 cut(s) 1524
Mph1103I ATGCAT 1 cut(s) 702
MscI TGGCCA 1 cut(s) 1524
MseI TTAA 3 cut(s) 102, 848, 1403
Msp20I TGGCCA 1 cut(s) 1524
MspCI CTTAAG 1 cut(s) 847
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 4 cut(s) 324, 739, 843, 1491
MvaI CCWGG 4 cut(s) 324, 739, 843, 1491
MwoI GCNNNNNNNGC 3 cut(s) 783, 1250, 1340
NdeII GATC 7 cut(s) 277, 370, 544, 550, 1109, 1206, 1327
NlaIII CATG 7 cut(s) 542, 700, 704, 876, 1000, 1217, 1334
NlaIV GGNNCC 3 cut(s) 22, 694, 820
NmeAIII GCCGAG 1 cut(s) 213
NmuCI GTSAC 3 cut(s) 463, 745, 1129
NsiI ATGCAT 1 cut(s) 702
NspI RCATGY 1 cut(s) 1217
NspV TTCGAA 1 cut(s) 1357
PciSI GCTCTTC 1 cut(s) 889
PcsI WCGNNNNNNNCGW 1 cut(s) 1354
PfeI GAWTC 6 cut(s) 59, 352, 535, 590, 854, 983
PflMI CCANNNNNTGG 1 cut(s) 1374
PfoI TCCNGGA 2 cut(s) 737, 1489
PkrI GCNGC 1 cut(s) 928
PleI GAGTC 2 cut(s) 660, 1469
PpsI GAGTC 2 cut(s) 660, 1469
PsiI TTATAA 1 cut(s) 114
Psp6I CCWGG 4 cut(s) 322, 737, 841, 1489
PspFI CCCAGC 1 cut(s) 1157
PspGI CCWGG 4 cut(s) 322, 737, 841, 1489
PspN4I GGNNCC 3 cut(s) 22, 694, 820
PspPI GGNCC 2 cut(s) 20, 445
PsuI RGATCY 3 cut(s) 277, 544, 1109
RsaI GTAC 2 cut(s) 1193, 1305
RsaNI GTAC 2 cut(s) 1192, 1304
SalI GTCGAC 1 cut(s) 770
SapI GCTCTTC 1 cut(s) 889
SaqAI TTAA 3 cut(s) 102, 848, 1403
SatI GCNGC 1 cut(s) 927
Sau3AI GATC 7 cut(s) 277, 370, 544, 550, 1109, 1206, 1327
Sau96I GGNCC 2 cut(s) 20, 445
SchI GAGTC 2 cut(s) 661, 1470
ScrFI CCNGG 4 cut(s) 324, 739, 843, 1491
SfaNI GCATC 4 cut(s) 85, 1028, 1279, 1373
SfuI TTCGAA 1 cut(s) 1357
SinI GGWCC 1 cut(s) 445
SmlI CTYRAG 2 cut(s) 176, 847
SmoI CTYRAG 2 cut(s) 176, 847
SpeI ACTAGT 1 cut(s) 1559
SsiI CCGC 2 cut(s) 1231, 1541
SspMI CTAG 6 cut(s) 167, 594, 656, 753, 1335, 1560
StyD4I CCNGG 4 cut(s) 322, 737, 841, 1489
StyI CCWWGG 2 cut(s) 394, 728
TaaI ACNGT 3 cut(s) 163, 1061, 1421
TaiI ACGT 4 cut(s) 136, 465, 866, 884
TaqI TCGA 7 cut(s) 50, 227, 486, 575, 771, 1357, 1546
TatI WGTACW 1 cut(s) 1191
TfiI GAWTC 6 cut(s) 59, 352, 535, 590, 854, 983
Tru1I TTAA 3 cut(s) 102, 848, 1403
Tru9I TTAA 3 cut(s) 102, 848, 1403
TscAI CASTG 2 cut(s) 949, 1532
TseFI GTSAC 3 cut(s) 463, 745, 1129
TseI GCWGC 1 cut(s) 926
Tsp45I GTSAC 3 cut(s) 463, 745, 1129
TspDTI ATGAA 9 cut(s) 18, 320, 444, 558, 927, 1013, 1401, 1457, 1587
TspGWI ACGGA 1 cut(s) 1473
TspRI CASTG 2 cut(s) 949, 1532
Van91I CCANNNNNTGG 1 cut(s) 1374
Vha464I CTTAAG 1 cut(s) 847
VpaK11BI GGWCC 1 cut(s) 445
XapI RAATTY 4 cut(s) 310, 646, 759, 933
XbaI TCTAGA 1 cut(s) 593
XceI RCATGY 1 cut(s) 1217
XmiI GTMKAC 4 cut(s) 158, 771, 1235, 1427
XspI CTAG 6 cut(s) 167, 594, 656, 753, 1335, 1560
Zsp2I ATGCAT 1 cut(s) 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.