Rorug04G0327900

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0006605
Physical Location & Seq
Forward (+)
50280842 .. 50281630
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0327900.1

Sequence Viewer

Length: 288 bp
ATGGATTGGCAAGGGCAAAAGCTAGCGGAGCAGCTGATGCAGATACTGCTGCTGGTATTTGCTGTGGTTGGGTTTCTGACTGGTTACCTGATGGGGTCGTTCCAGATGATGATGCTGGTGTATGCAGGTGGTGTGGTTCTGACCACGTTAGTCACTGTCCCCAATTGGCCCTGGTTCAATCGCCACCCCCTGAAATGGTTGGACCCAATCGAAGCCGAAAAGCACCCCAAGCCTCAGAAGCAGCAGCAGCCGGTGAGTTCCAAGAAGAAAGGCTCCAAAGCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
RCC1 RRM_1

Protein Analysis

95

Amino Acids

10.84

Weight (kDa)

9.85

Isoelectric Point (pI)

31.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPC12 PF06645 1 - 69 6.6e-32 Microsomal signal peptidase 12 kDa subunit (SPC12)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 116
Acc36I ACCTGC 1 cut(s) 116
AciI CCGC 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 195
AgsI TTSAA 1 cut(s) 178
AjnI CCWGG 1 cut(s) 170
AluBI AGCT 2 cut(s) 22, 34
AluI AGCT 2 cut(s) 22, 34
AlwNI CAGNNNCTG 1 cut(s) 46
AoxI GGCC 1 cut(s) 167
ApeKI GCWGC 5 cut(s) 31, 49, 241, 244, 247
AspS9I GGNCC 2 cut(s) 168, 202
AsuHPI GGTGA 1 cut(s) 265
AsuNHI GCTAGC 1 cut(s) 22
AvaII GGWCC 1 cut(s) 202
BbvI GCAGC 5 cut(s) 36, 43, 253, 256, 259
BccI CCATC 1 cut(s) 85
BciT130I CCWGG 1 cut(s) 172
BfaI CTAG 1 cut(s) 23
BfuAI ACCTGC 1 cut(s) 116
BisI GCNGC 5 cut(s) 32, 50, 242, 245, 248
BlsI GCNGC 5 cut(s) 33, 51, 243, 246, 249
Bme1390I CCNGG 1 cut(s) 172
Bme18I GGWCC 1 cut(s) 202
BmgT120I GGNCC 2 cut(s) 168, 202
BmiI GGNNCC 2 cut(s) 204, 274
BmrFI CCNGG 1 cut(s) 172
BmsI GCATC 2 cut(s) 27, 102
BmtI GCTAGC 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 170
Bsc4I CCNNNNNNNGG 1 cut(s) 195
Bse118I RCCGGY 1 cut(s) 250
Bse1I ACTGG 1 cut(s) 85
BseBI CCWGG 1 cut(s) 172
BseDI CCNNGG 1 cut(s) 170
BseLI CCNNNNNNNGG 1 cut(s) 195
BseMII CTCAG 1 cut(s) 248
BseNI ACTGG 1 cut(s) 85
BseXI GCAGC 5 cut(s) 36, 43, 253, 256, 259
BshFI GGCC 1 cut(s) 169
BsiSI CCGG 1 cut(s) 251
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 195
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 1 cut(s) 169
BspACI CCGC 1 cut(s) 26
BspANI GGCC 1 cut(s) 169
BspCNI CTCAG 1 cut(s) 247
BspLI GGNNCC 2 cut(s) 204, 274
BspMI ACCTGC 1 cut(s) 116
BspOI GCTAGC 1 cut(s) 26
BsrFI RCCGGY 1 cut(s) 250
BsrI ACTGG 1 cut(s) 85
BssAI RCCGGY 1 cut(s) 250
BssECI CCNNGG 1 cut(s) 170
Bst2UI CCWGG 1 cut(s) 172
Bst4CI ACNGT 1 cut(s) 157
BstAPI GCANNNNNTGC 2 cut(s) 37, 46
BstC8I GCNNGC 1 cut(s) 24
BstDEI CTNAG 1 cut(s) 234
BstEII GGTNACC 1 cut(s) 83
BstMWI GCNNNNNNNGC 6 cut(s) 28, 37, 46, 229, 238, 247
BstNI CCWGG 1 cut(s) 172
BstPI GGTNACC 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 170
BstV1I GCAGC 5 cut(s) 36, 43, 253, 256, 259
BsuRI GGCC 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 153
BveI ACCTGC 1 cut(s) 116
Cac8I GCNNGC 1 cut(s) 24
CaiI CAGNNNCTG 1 cut(s) 46
Cfr10I RCCGGY 1 cut(s) 250
Cfr13I GGNCC 2 cut(s) 168, 202
CviJI RGCY 7 cut(s) 22, 34, 169, 215, 232, 250, 273
CviKI_1 RGCY 7 cut(s) 22, 34, 169, 215, 232, 250, 273
DdeI CTNAG 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 202
Eco91I GGTNACC 1 cut(s) 83
EcoO65I GGTNACC 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 170
FaiI YATR 1 cut(s) 123
FaqI GGGAC 1 cut(s) 143
Fnu4HI GCNGC 5 cut(s) 32, 50, 242, 245, 248
Fsp4HI GCNGC 5 cut(s) 32, 50, 242, 245, 248
FspBI CTAG 1 cut(s) 23
GluI GCNGC 5 cut(s) 32, 50, 242, 245, 248
HaeIII GGCC 1 cut(s) 169
HapII CCGG 1 cut(s) 251
HpaII CCGG 1 cut(s) 251
HphI GGTGA 1 cut(s) 265
Hpy188I TCNGA 3 cut(s) 78, 141, 237
Hpy188III TCNNGA 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4IV ACGT 1 cut(s) 146
HpyCH4V TGCA 2 cut(s) 40, 125
HpyF10VI GCNNNNNNNGC 6 cut(s) 28, 37, 46, 229, 238, 247
HpyF3I CTNAG 1 cut(s) 234
HpySE526I ACGT 1 cut(s) 146
LmnI GCTCC 2 cut(s) 28, 278
Lsp1109I GCAGC 5 cut(s) 36, 43, 253, 256, 259
LweI GCATC 2 cut(s) 27, 102
MaeI CTAG 1 cut(s) 23
MaeII ACGT 1 cut(s) 146
MaeIII GTNAC 2 cut(s) 83, 151
MboII GAAGA 1 cut(s) 277
MfeI CAATTG 1 cut(s) 163
MluCI AATT 1 cut(s) 163
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 1 cut(s) 243
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 1 cut(s) 251
MspR9I CCNGG 1 cut(s) 172
MunI CAATTG 1 cut(s) 163
MvaI CCWGG 1 cut(s) 172
MwoI GCNNNNNNNGC 6 cut(s) 28, 37, 46, 229, 238, 247
NheI GCTAGC 1 cut(s) 22
NlaIV GGNNCC 2 cut(s) 204, 274
NmuCI GTSAC 1 cut(s) 151
PaqCI CACCTGC 1 cut(s) 116
PkrI GCNGC 5 cut(s) 33, 51, 243, 246, 249
Psp6I CCWGG 1 cut(s) 170
PspEI GGTNACC 1 cut(s) 83
PspGI CCWGG 1 cut(s) 170
PspN4I GGNNCC 2 cut(s) 204, 274
PspPI GGNCC 2 cut(s) 168, 202
PstNI CAGNNNCTG 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 34
SatI GCNGC 5 cut(s) 32, 50, 242, 245, 248
Sau96I GGNCC 2 cut(s) 168, 202
ScrFI CCNGG 1 cut(s) 172
SetI ASST 5 cut(s) 24, 36, 90, 130, 149
SfaNI GCATC 2 cut(s) 27, 102
SinI GGWCC 1 cut(s) 202
Sse9I AATT 1 cut(s) 163
SsiI CCGC 1 cut(s) 26
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 170
TaaI ACNGT 1 cut(s) 157
TaiI ACGT 1 cut(s) 149
TaqI TCGA 1 cut(s) 210
TasI AATT 1 cut(s) 163
TscAI CASTG 1 cut(s) 160
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 5 cut(s) 31, 49, 241, 244, 247
Tsp45I GTSAC 1 cut(s) 151
TspRI CASTG 1 cut(s) 160
VpaK11BI GGWCC 1 cut(s) 202
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.