RLG00000006154

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0006605
Physical Location & Seq
Reverse (-)
4796479 .. 4798993
2515 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006154

Sequence Viewer

Length: 1209 bp
ATGGAAGAGAATGAAGAGGGCAGAGTAAAAAACGAAGAAGAAGAAAAAGAAGAGCAACAAGTGTGGACTTGGGGGGCAGGAACGGACGGGCAGCTGGGCACGGGCAGGCTACAGGATGAGCTCCTCCCTCAGTTGCTTCGTCTACCTTCTCTCTCCGCCGTGGGACCCATCTCTCTCCTCGCCTGCGGCGGCGCTCACGTTCTCGCCTTAACATCTGGTGGGAAGGTGCTGACATGGGGAAGAGGCACATCTGGTCAGCTTGGTCATTCTGATAGGGTTAATAGCCCACATCCCAAGCTTGTAATGTCTTTGGTCACCTACTTCATTACGCATGCTTCTGCTGGCTGGAACCACTCGGGTTTCGTTTCAGATGCGGGGGATGTTTTCACATGTGGAGATGGCTCATTTGGTCAGCTCGGGCATGGTGATTATAGTTTACATTGCAGTCCTGTCAAAGTCTCTTTCTTTGATGATCATTGTGTTGAGCAGATAGCATGTGGTATGCGCCATTCTCTTGTTTTGCTGAAAGGTGATTCAGGAGATGAAGTGTACGGGTTTGGCTCCGGGAAGCGTGGTCAACTTGGTATCTCAAAGGATAAGATCAAGTCAATTAGTCTTCCTGAACGAATTTATGGACTTGAAGGTGTAAAAGTTACTAGCATCATTGCAAATGGAGATCAAAGTGCAGCATTATCTGCTGATGGGCATATGTACACTTGGGGAAAAGGGTTTGGTGGCACTTCAAGTGCTCACTCCCCACGGTCCTTACCTACATCGTTATGGTTTACCAAAGCTGCTGTTGGATGGAATCATGCTTTATTATTAACTGCTGGTGGAGAAGTTTTCATGCTCGGTGGAAATCACCATGGAGTCCTTGGTAATCCTGACAAAATGACTCCAGCCAGGCTCTTAGCAGATTCAGGAGAAGCTATCCTGGATAAAGTGCCTGGTCTTGAAGAGAATAGGATCATGGACATTGCAGCCGGGGCTGAGCACTCTGTTATTGTCACAGATGATGGAGTGATTAAGACATGGGGCTGGGGTGAACATGGTCAGCTTGGCTTGGGAAATACATGCGATCAAACAACTCCTCAAGAAGTGAGTCTCGGACACAAATCTCGGAAAGAAGCTGCTTCAATCAAGATTTACTGTGGTAGTGGGTTCACAATGGCTGTAAGAACACCGCATCTTCCTTCTCAGACTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
RCC1 RRM_1

Protein Analysis

403

Amino Acids

42.59

Weight (kDa)

5.74

Isoelectric Point (pI)

28.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 20 - 391 9.1e-80 RCC1-like domain
RCC1 PF00415 20 - 70 4.4e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 59 - 86 1.2e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 74 - 121 4.4e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 126 - 174 2.2e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 182 - 231 9.9e-07 Regulator of chromosome condensation (RCC1) repeat
Alsin_RLD PF25384 271 - 386 1.4e-07 Alsin RCC1-like domain
RCC1_2 PF13540 325 - 352 2.3e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 344 - 392 8e-11 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 142
AciI CCGC 5 cut(s) 156, 186, 189, 374, 1184
AclWI GGATC 1 cut(s) 974
AcsI RAATTY 1 cut(s) 627
AfaI GTAC 2 cut(s) 551, 713
AflIII ACRYGT 1 cut(s) 389
AgsI TTSAA 4 cut(s) 641, 744, 956, 1137
AjnI CCWGG 3 cut(s) 902, 933, 946
AluBI AGCT 9 cut(s) 94, 121, 259, 298, 415, 794, 929, 1057, 1130
AluI AGCT 9 cut(s) 94, 121, 259, 298, 415, 794, 929, 1057, 1130
Alw21I GWGCWC 3 cut(s) 123, 751, 996
Alw26I GTCTC 2 cut(s) 463, 1109
AlwI GGATC 1 cut(s) 974
Ama87I CYCGRG 2 cut(s) 355, 416
ApeKI GCWGC 5 cut(s) 91, 686, 794, 980, 1130
ApoI RAATTY 1 cut(s) 627
AspLEI GCGC 2 cut(s) 194, 507
AspS9I GGNCC 2 cut(s) 164, 762
AsuC2I CCSGG 2 cut(s) 565, 985
AsuHPI GGTGA 5 cut(s) 307, 437, 542, 854, 1055
AvaI CYCGRG 2 cut(s) 355, 416
AvaII GGWCC 2 cut(s) 164, 762
BaeGI GKGCMC 1 cut(s) 101
BanII GRGCYC 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 608
Bbv12I GWGCWC 3 cut(s) 123, 751, 996
BbvI GCAGC 5 cut(s) 103, 698, 781, 992, 1117
BccI CCATC 5 cut(s) 176, 392, 695, 798, 1010
BceAI ACGGC 1 cut(s) 143
BciT130I CCWGG 3 cut(s) 904, 935, 948
BclI TGATCA 1 cut(s) 472
BcnI CCSGG 2 cut(s) 565, 985
BcoDI GTCTC 2 cut(s) 463, 1109
BfaI CTAG 1 cut(s) 657
BfmI CTRYAG 1 cut(s) 110
BfoI RGCGCY 1 cut(s) 195
BisI GCNGC 7 cut(s) 92, 187, 190, 687, 795, 981, 1131
BlpI GCTNAGC 1 cut(s) 990
BlsI GCNGC 7 cut(s) 93, 188, 191, 688, 796, 982, 1132
Bme1390I CCNGG 5 cut(s) 565, 904, 935, 948, 985
Bme18I GGWCC 2 cut(s) 164, 762
BmeT110I CYCGRG 2 cut(s) 355, 416
BmgT120I GGNCC 2 cut(s) 164, 762
BmiI GGNNCC 4 cut(s) 165, 166, 350, 562
BmrFI CCNGG 5 cut(s) 565, 904, 935, 948, 985
BmsI GCATC 3 cut(s) 361, 669, 1195
BpiI GAAGAC 1 cut(s) 608
BpmI CTGGAG 1 cut(s) 882
Bpu1102I GCTNAGC 1 cut(s) 990
BpuEI CTTGAG 1 cut(s) 1077
BpuMI CCSGG 2 cut(s) 565, 985
BsaJI CCNNGG 5 cut(s) 159, 758, 865, 874, 984
BsaXI ACNNNNNCTCC 2 cut(s) 531, 561
Bse3DI GCAATG 3 cut(s) 439, 663, 975
BseBI CCWGG 3 cut(s) 904, 935, 948
BseDI CCNNGG 5 cut(s) 159, 758, 865, 874, 984
BseGI GGATG 4 cut(s) 121, 289, 385, 809
BseMI GCAATG 3 cut(s) 439, 663, 975
BseMII CTCAG 2 cut(s) 143, 981
BseRI GAGGAG 3 cut(s) 113, 167, 1080
BseSI GKGCMC 1 cut(s) 101
BseXI GCAGC 5 cut(s) 103, 698, 781, 992, 1117
BseYI CCCAGC 2 cut(s) 94, 1038
BsgI GTGCAG 1 cut(s) 705
BsiHKAI GWGCWC 3 cut(s) 123, 751, 996
BsiHKCI CYCGRG 2 cut(s) 355, 416
BsiSI CCGG 2 cut(s) 564, 984
BslFI GGGAC 1 cut(s) 177
BsmAI GTCTC 2 cut(s) 463, 1109
BsmFI GGGAC 1 cut(s) 177
BsoBI CYCGRG 2 cut(s) 355, 416
Bsp1286I GDGCHC 4 cut(s) 101, 123, 751, 996
Bsp1407I TGTACA 1 cut(s) 711
Bsp143I GATC 5 cut(s) 472, 600, 676, 966, 1078
Bsp1720I GCTNAGC 1 cut(s) 990
Bsp19I CCATGG 1 cut(s) 865
BspACI CCGC 5 cut(s) 156, 186, 189, 374, 1184
BspCNI CTCAG 2 cut(s) 142, 982
BspLI GGNNCC 4 cut(s) 165, 166, 350, 562
BspPI GGATC 1 cut(s) 974
BspQI GCTCTTC 1 cut(s) 45
BsrDI GCAATG 3 cut(s) 439, 663, 975
BsrGI TGTACA 1 cut(s) 711
BssECI CCNNGG 5 cut(s) 159, 758, 865, 874, 984
BssMI GATC 5 cut(s) 472, 600, 676, 966, 1078
BssT1I CCWWGG 2 cut(s) 865, 874
Bst2UI CCWGG 3 cut(s) 904, 935, 948
Bst4CI ACNGT 2 cut(s) 762, 1151
Bst6I CTCTTC 4 cut(s) 9, 45, 235, 951
BstAPI GCANNNNNTGC 1 cut(s) 695
BstAUI TGTACA 1 cut(s) 711
BstC8I GCNNGC 4 cut(s) 107, 184, 333, 343
BstDEI CTNAG 4 cut(s) 129, 910, 990, 1197
BstDSI CCRYGG 3 cut(s) 159, 758, 865
BstEII GGTNACC 1 cut(s) 313
BstF5I GGATG 4 cut(s) 121, 289, 385, 809
BstH2I RGCGCY 1 cut(s) 195
BstHHI GCGC 2 cut(s) 194, 507
BstKTI GATC 5 cut(s) 475, 603, 679, 969, 1081
BstMAI GTCTC 2 cut(s) 463, 1109
BstMBI GATC 5 cut(s) 472, 600, 676, 966, 1078
BstMWI GCNNNNNNNGC 2 cut(s) 695, 986
BstNI CCWGG 3 cut(s) 904, 935, 948
BstNSI RCATGY 4 cut(s) 335, 393, 498, 1077
BstPI GGTNACC 1 cut(s) 313
BstSCI CCNGG 5 cut(s) 563, 902, 933, 946, 983
BstSFI CTRYAG 1 cut(s) 110
BstSLI GKGCMC 1 cut(s) 101
BstV1I GCAGC 5 cut(s) 103, 698, 781, 992, 1117
BstV2I GAAGAC 1 cut(s) 608
BtgI CCRYGG 3 cut(s) 159, 758, 865
BtsCI GGATG 4 cut(s) 121, 289, 385, 809
Cac8I GCNNGC 4 cut(s) 107, 184, 333, 343
CfoI GCGC 2 cut(s) 194, 507
Cfr13I GGNCC 2 cut(s) 164, 762
Csp6I GTAC 2 cut(s) 550, 712
CspCI CAANNNNNGTGG 2 cut(s) 44, 79
CviQI GTAC 2 cut(s) 550, 712
DdeI CTNAG 4 cut(s) 129, 910, 990, 1197
DpnI GATC 5 cut(s) 474, 602, 678, 968, 1080
DpnII GATC 5 cut(s) 472, 600, 676, 966, 1078
Eam1104I CTCTTC 4 cut(s) 9, 45, 235, 951
EarI CTCTTC 4 cut(s) 9, 45, 235, 951
EciI GGCGGA 1 cut(s) 145
Ecl136II GAGCTC 1 cut(s) 121
Eco130I CCWWGG 2 cut(s) 865, 874
Eco24I GRGCYC 1 cut(s) 123
Eco47I GGWCC 2 cut(s) 164, 762
Eco53kI GAGCTC 1 cut(s) 121
Eco88I CYCGRG 2 cut(s) 355, 416
Eco91I GGTNACC 1 cut(s) 313
EcoICRI GAGCTC 1 cut(s) 121
EcoO109I RGGNCCY 1 cut(s) 164
EcoO65I GGTNACC 1 cut(s) 313
EcoRII CCWGG 3 cut(s) 902, 933, 946
EcoT14I CCWWGG 2 cut(s) 865, 874
EcoT38I GRGCYC 1 cut(s) 123
ErhI CCWWGG 2 cut(s) 865, 874
FaqI GGGAC 1 cut(s) 177
FauI CCCGC 1 cut(s) 367
FauNDI CATATG 1 cut(s) 708
FbaI TGATCA 1 cut(s) 472
FblI GTMKAC 1 cut(s) 142
Fnu4HI GCNGC 7 cut(s) 92, 187, 190, 687, 795, 981, 1131
FokI GGATG 4 cut(s) 128, 276, 392, 816
FriOI GRGCYC 1 cut(s) 123
Fsp4HI GCNGC 7 cut(s) 92, 187, 190, 687, 795, 981, 1131
FspBI CTAG 1 cut(s) 657
GlaI GCGC 2 cut(s) 193, 506
GluI GCNGC 7 cut(s) 92, 187, 190, 687, 795, 981, 1131
GsaI CCCAGC 2 cut(s) 98, 1042
GsuI CTGGAG 1 cut(s) 882
HaeII RGCGCY 1 cut(s) 195
HapII CCGG 2 cut(s) 564, 984
HhaI GCGC 2 cut(s) 194, 507
Hin6I GCGC 2 cut(s) 192, 505
HinP1I GCGC 2 cut(s) 192, 505
HincII GTYRAC 1 cut(s) 578
HindII GTYRAC 1 cut(s) 578
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 6 cut(s) 533, 808, 870, 895, 917, 1102
HpaII CCGG 2 cut(s) 564, 984
HphI GGTGA 5 cut(s) 307, 437, 542, 854, 1055
Hpy166II GTNNAC 9 cut(s) 66, 143, 437, 550, 578, 714, 786, 1046, 1164
Hpy188I TCNGA 5 cut(s) 271, 370, 1109, 1122, 1200
Hpy188III TCNNGA 7 cut(s) 537, 620, 884, 921, 953, 1094, 1141
Hpy8I GTNNAC 9 cut(s) 66, 143, 437, 550, 578, 714, 786, 1046, 1164
HpyAV CCTTC 4 cut(s) 156, 217, 635, 1203
HpyCH4III ACNGT 2 cut(s) 762, 1151
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 4 cut(s) 444, 668, 686, 980
HpyF10VI GCNNNNNNNGC 2 cut(s) 695, 986
HpyF3I CTNAG 4 cut(s) 129, 910, 990, 1197
HpySE526I ACGT 1 cut(s) 198
HspAI GCGC 2 cut(s) 192, 505
KflI GGGWCCC 1 cut(s) 164
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 5 cut(s) 472, 600, 676, 966, 1078
LguI GCTCTTC 1 cut(s) 45
LmnI GCTCC 2 cut(s) 126, 566
Lsp1109I GCAGC 5 cut(s) 103, 698, 781, 992, 1117
LweI GCATC 3 cut(s) 361, 669, 1195
MaeI CTAG 1 cut(s) 657
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 3 cut(s) 313, 652, 1006
MalI GATC 5 cut(s) 474, 602, 678, 968, 1080
MboI GATC 5 cut(s) 472, 600, 676, 966, 1078
MhlI GDGCHC 4 cut(s) 101, 123, 751, 996
MluCI AATT 2 cut(s) 609, 627
MlyI GAGTC 3 cut(s) 879, 889, 1111
MmeI TCCRAC 1 cut(s) 781
MnlI CCTC 6 cut(s) 10, 134, 138, 188, 236, 1101
MseI TTAA 4 cut(s) 209, 279, 824, 1026
MslI CAYNNNNRTG 1 cut(s) 778
MspA1I CMGCKG 1 cut(s) 94
MspI CCGG 2 cut(s) 564, 984
MspR9I CCNGG 5 cut(s) 565, 904, 935, 948, 985
MvaI CCWGG 3 cut(s) 904, 935, 948
MwoI GCNNNNNNNGC 2 cut(s) 695, 986
NciI CCSGG 2 cut(s) 565, 985
NcoI CCATGG 1 cut(s) 865
NdeI CATATG 1 cut(s) 708
NdeII GATC 5 cut(s) 472, 600, 676, 966, 1078
NlaIV GGNNCC 4 cut(s) 165, 166, 350, 562
NmuCI GTSAC 2 cut(s) 313, 1006
NspI RCATGY 4 cut(s) 335, 393, 498, 1077
PaeI GCATGC 1 cut(s) 335
PciI ACATGT 1 cut(s) 389
PciSI GCTCTTC 1 cut(s) 45
PfeI GAWTC 3 cut(s) 533, 808, 917
PfoI TCCNGGA 2 cut(s) 563, 933
PkrI GCNGC 7 cut(s) 93, 188, 191, 688, 796, 982, 1132
PleI GAGTC 3 cut(s) 878, 889, 1110
PpsI GAGTC 3 cut(s) 878, 889, 1110
PpuMI RGGWCCY 1 cut(s) 164
PscI ACATGT 1 cut(s) 389
Psp124BI GAGCTC 1 cut(s) 123
Psp5II RGGWCCY 1 cut(s) 164
Psp6I CCWGG 3 cut(s) 902, 933, 946
PspEI GGTNACC 1 cut(s) 313
PspFI CCCAGC 2 cut(s) 94, 1038
PspGI CCWGG 3 cut(s) 902, 933, 946
PspN4I GGNNCC 4 cut(s) 165, 166, 350, 562
PspPI GGNCC 2 cut(s) 164, 762
PspPPI RGGWCCY 1 cut(s) 164
PvuII CAGCTG 1 cut(s) 94
RsaI GTAC 2 cut(s) 551, 713
RsaNI GTAC 2 cut(s) 550, 712
RseI CAYNNNNRTG 1 cut(s) 778
SacI GAGCTC 1 cut(s) 123
SapI GCTCTTC 1 cut(s) 45
SaqAI TTAA 4 cut(s) 209, 279, 824, 1026
SatI GCNGC 7 cut(s) 92, 187, 190, 687, 795, 981, 1131
Sau3AI GATC 5 cut(s) 472, 600, 676, 966, 1078
Sau96I GGNCC 2 cut(s) 164, 762
SchI GAGTC 3 cut(s) 879, 889, 1111
ScrFI CCNGG 5 cut(s) 565, 904, 935, 948, 985
SduI GDGCHC 4 cut(s) 101, 123, 751, 996
SfaNI GCATC 3 cut(s) 361, 669, 1195
SfcI CTRYAG 1 cut(s) 110
SinI GGWCC 2 cut(s) 164, 762
SmiMI CAYNNNNRTG 1 cut(s) 778
SmlI CTYRAG 1 cut(s) 1092
SmoI CTYRAG 1 cut(s) 1092
SphI GCATGC 1 cut(s) 335
Sse9I AATT 2 cut(s) 609, 627
SsiI CCGC 5 cut(s) 156, 186, 189, 374, 1184
SspMI CTAG 1 cut(s) 657
SstI GAGCTC 1 cut(s) 123
StyD4I CCNGG 5 cut(s) 563, 902, 933, 946, 983
StyI CCWWGG 2 cut(s) 865, 874
TaaI ACNGT 2 cut(s) 762, 1151
TaiI ACGT 1 cut(s) 201
TasI AATT 2 cut(s) 609, 627
TatI WGTACW 1 cut(s) 711
TauI GCSGC 2 cut(s) 189, 192
TfiI GAWTC 3 cut(s) 533, 808, 917
Tru1I TTAA 4 cut(s) 209, 279, 824, 1026
Tru9I TTAA 4 cut(s) 209, 279, 824, 1026
TseFI GTSAC 2 cut(s) 313, 1006
TseI GCWGC 5 cut(s) 91, 686, 794, 980, 1130
Tsp45I GTSAC 2 cut(s) 313, 1006
TspDTI ATGAA 4 cut(s) 27, 313, 558, 835
TspGWI ACGGA 1 cut(s) 98
VpaK11BI GGWCC 2 cut(s) 164, 762
XapI RAATTY 1 cut(s) 627
XceI RCATGY 4 cut(s) 335, 393, 498, 1077
XcmI CCANNNNNNNNNTGG 1 cut(s) 872
XmiI GTMKAC 1 cut(s) 142
XspI CTAG 1 cut(s) 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.