AT1G27060

regulator of chromosome condensation (RCC1) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006605
Physical Location & Seq
Forward (+)
9394907 .. 9396673
1767 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G27060.1

Sequence Viewer

Length: 1161 bp
ATGGCCGAACACGGTGAGACTCAAGCTGATGAAGAAGAAGAAGAACAAGTATGGAGCTGGGGTGCTGGTACGGACGGACAGTTAGGGACGACAAAGCTGCAAGACGAGCTTCTTCCGCAGCTTCTCTCTCTGACATCACTTCCTTCCATATCAATGCTCGCTTGTGGCGGCGCTCACGTCATCGCTTTGACTTCTGGTGGTAAAGTCTTCACATGGGGAAGAGGAAGCTCTGGTCAGTTAGGACATGGAGACATCCTCAACATTACTTTGCCAAAGCTTGTATCTTTCTTTGACGACTCTGTTATTACTCAAGCTGCTGCTGGATGGAGTCATTCTGGTTTTGTTTCAGATTCTGGTTGTATTTTCACATGTGGCAATGGCTCGTTTGGGCAGCTTGGTCATGGTGATACCTTGTCATTAAGCACTCCAGCTAAAGTCTCTCACTTTAACAATGACAGTGTGAAGATGGTAGCTTGTGGTATGCGCCACTCACTTGTTTTGTTTGCAGGGAATCAAGTGTGTGGATTTGGATCTGGAAAACGTGGACAGTTAGGTTTCTCATCAGACAGAATAAAATCAGTAAATCTTCCTTGTGTTGTCTCTGGATTAAAAGATGTTGAGGTTGTTCGTATATCAGCTAATGGAGATCATAGTGCAGCTATATCCGCTGATGGACAGTTCTTCAGTTGGGGAAGAGGATTCTGCGGCGGCCCTGATGTTCATGCCCCTCAGAGCTTGCCTTCACCTCTATCTTTCAGAGAAGTTGCTGTAGGATGGAATCATGCTTTACTACTGACCGTCGATGGTGAGGTGTTCAAGCTTGGTAGCACTCTTAATAAACAACCTGAGAAGCAACAACTGCAAATAGATTCCTCTGAAGCTCTCTTTGAGAAAGTTCCGGATTTTGATGGAGTTAAAGTTATGCAGATAGCAGCAGGAGCAGAGCATTCTGCTGCCGTAACAGAGAATGGAGAAGTTAAGACATGGGGATGGGGAGAACATGGTCAGCTAGGCCTTGGAAATACCAATGACCAAACCAGTCCTGAATTGGTGAGCTTAGGAAGTATAGACCTGCGAACGAAAGAGATCAAAGTATATTGCGGAAGTGGATTTACTTATGCAGTAAAACGAAAACAAGAGCTTTCACCAACCTCGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
RCC1

Protein Analysis

386

Amino Acids

40.73

Weight (kDa)

5.26

Isoelectric Point (pI)

30.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 16 - 373 8e-82 RCC1-like domain
RCC1 PF00415 16 - 63 2e-10 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 54 - 79 1e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 67 - 114 5e-14 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 118 - 167 2.3e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 172 - 221 2.6e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 309 - 336 3.1e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 323 - 375 1e-09 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1080
AccIII TCCGGA 1 cut(s) 898
AciI CCGC 6 cut(s) 116, 168, 666, 705, 708, 1101
AclWI GGATC 1 cut(s) 538
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 2 cut(s) 667, 897
AfaI GTAC 1 cut(s) 70
AflIII ACRYGT 1 cut(s) 368
AgsI TTSAA 1 cut(s) 817
AjiI CACGTC 1 cut(s) 178
Alw26I GTCTC 4 cut(s) 11, 243, 442, 604
AlwI GGATC 1 cut(s) 538
AlwNI CAGNNNCTG 1 cut(s) 353
Aor13HI TCCGGA 1 cut(s) 898
AoxI GGCC 3 cut(s) 3, 709, 1012
ApeKI GCWGC 8 cut(s) 97, 118, 314, 317, 391, 656, 932, 953
AspLEI GCGC 2 cut(s) 173, 486
AspS9I GGNCC 1 cut(s) 710
AsuHPI GGTGA 6 cut(s) 26, 416, 735, 818, 1063, 1137
BarI GAAGNNNNNNTAC 2 cut(s) 1096, 1128
BbsI GAAGAC 1 cut(s) 199
BbvI GCAGC 8 cut(s) 84, 130, 301, 304, 403, 668, 940, 944
BccI CCATC 7 cut(s) 318, 460, 665, 768, 797, 902, 984
BceAI ACGGC 1 cut(s) 941
BcgI CGANNNNNNTGC 2 cut(s) 79, 113
BcoDI GTCTC 4 cut(s) 11, 243, 442, 604
BfaI CTAG 1 cut(s) 1010
BfmI CTRYAG 1 cut(s) 768
BfoI RGCGCY 1 cut(s) 174
BfuAI ACCTGC 1 cut(s) 1080
BmgBI CACGTC 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 710
BpiI GAAGAC 1 cut(s) 199
BplI GAGNNNNNCTC 2 cut(s) 240, 272
BpmI CTGGAG 1 cut(s) 411
Bpu10I CCTNAGC 1 cut(s) 1057
BpuEI CTTGAG 2 cut(s) 6, 294
BsaBI GATNNNNATC 1 cut(s) 529
BsaJI CCNNGG 1 cut(s) 1015
BsaWI WCCGGW 1 cut(s) 898
BsaXI ACNNNNNCTCC 4 cut(s) 46, 76, 903, 933
Bse1I ACTGG 1 cut(s) 1038
Bse3DI GCAATG 1 cut(s) 382
Bse8I GATNNNNATC 1 cut(s) 529
BseAI TCCGGA 1 cut(s) 898
BseDI CCNNGG 1 cut(s) 1015
BseGI GGATG 4 cut(s) 252, 329, 779, 995
BseJI GATNNNNATC 1 cut(s) 529
BseMI GCAATG 1 cut(s) 382
BseMII CTCAG 2 cut(s) 743, 837
BseNI ACTGG 1 cut(s) 1038
BseXI GCAGC 8 cut(s) 84, 130, 301, 304, 403, 668, 940, 944
BseYI CCCAGC 1 cut(s) 57
BsgI GTGCAG 1 cut(s) 675
BshFI GGCC 3 cut(s) 5, 711, 1014
BsiSI CCGG 1 cut(s) 899
BslFI GGGAC 1 cut(s) 100
BsmAI GTCTC 4 cut(s) 11, 243, 442, 604
BsmFI GGGAC 1 cut(s) 100
BsmI GAATGC 1 cut(s) 946
BsnI GGCC 3 cut(s) 5, 711, 1014
Bsp13I TCCGGA 1 cut(s) 898
Bsp143I GATC 3 cut(s) 530, 646, 1086
BspACI CCGC 6 cut(s) 116, 168, 666, 705, 708, 1101
BspANI GGCC 3 cut(s) 5, 711, 1014
BspCNI CTCAG 2 cut(s) 742, 838
BspEI TCCGGA 1 cut(s) 898
BspMI ACCTGC 1 cut(s) 1080
BspPI GGATC 1 cut(s) 538
BsrDI GCAATG 1 cut(s) 382
BsrI ACTGG 1 cut(s) 1038
BssECI CCNNGG 1 cut(s) 1015
BssMI GATC 3 cut(s) 530, 646, 1086
BssT1I CCWWGG 1 cut(s) 1015
Bst4CI ACNGT 6 cut(s) 14, 81, 458, 549, 678, 799
Bst6I CTCTTC 2 cut(s) 214, 688
BstAPI GCANNNNNTGC 1 cut(s) 859
BstC8I GCNNGC 2 cut(s) 159, 737
BstDEI CTNAG 3 cut(s) 729, 846, 1057
BstF5I GGATG 4 cut(s) 252, 329, 779, 995
BstH2I RGCGCY 1 cut(s) 174
BstHHI GCGC 2 cut(s) 173, 486
BstKTI GATC 3 cut(s) 533, 649, 1089
BstMAI GTCTC 4 cut(s) 11, 243, 442, 604
BstMBI GATC 3 cut(s) 530, 646, 1086
BstMWI GCNNNNNNNGC 5 cut(s) 106, 115, 665, 859, 938
BstNSI RCATGY 1 cut(s) 372
BstSFI CTRYAG 1 cut(s) 768
BstV1I GCAGC 8 cut(s) 84, 130, 301, 304, 403, 668, 940, 944
BstV2I GAAGAC 1 cut(s) 199
BstX2I RGATCY 1 cut(s) 530
BstYI RGATCY 1 cut(s) 530
BsuRI GGCC 3 cut(s) 5, 711, 1014
BtgZI GCGATG 1 cut(s) 166
BtrI CACGTC 1 cut(s) 178
BtsCI GGATG 4 cut(s) 252, 329, 779, 995
BtsIMutI CAGTG 1 cut(s) 463
BveI ACCTGC 1 cut(s) 1080
Cac8I GCNNGC 2 cut(s) 159, 737
CaiI CAGNNNCTG 1 cut(s) 353
CfoI GCGC 2 cut(s) 173, 486
Cfr13I GGNCC 1 cut(s) 710
Csp6I GTAC 1 cut(s) 69
CviAII CATG 8 cut(s) 213, 245, 369, 401, 722, 782, 984, 1001
CviQI GTAC 1 cut(s) 69
DdeI CTNAG 3 cut(s) 729, 846, 1057
DpnI GATC 3 cut(s) 532, 648, 1088
DpnII GATC 3 cut(s) 530, 646, 1086
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 214, 688
EarI CTCTTC 2 cut(s) 214, 688
Eco130I CCWWGG 1 cut(s) 1015
Eco147I AGGCCT 1 cut(s) 1014
Eco57I CTGAAG 2 cut(s) 667, 897
EcoT14I CCWWGG 1 cut(s) 1015
ErhI CCWWGG 1 cut(s) 1015
FaeI CATG 8 cut(s) 216, 248, 372, 404, 725, 785, 987, 1004
FalI AAGNNNNNCTT 2 cut(s) 93, 125
FaqI GGGAC 1 cut(s) 100
FatI CATG 8 cut(s) 212, 244, 368, 400, 721, 781, 983, 1000
FokI GGATG 4 cut(s) 239, 336, 786, 1002
FspBI CTAG 1 cut(s) 1010
GlaI GCGC 2 cut(s) 172, 485
GsaI CCCAGC 1 cut(s) 61
GsuI CTGGAG 1 cut(s) 411
HaeII RGCGCY 1 cut(s) 174
HaeIII GGCC 3 cut(s) 5, 711, 1014
HapII CCGG 1 cut(s) 899
HhaI GCGC 2 cut(s) 173, 486
Hin1II CATG 8 cut(s) 216, 248, 372, 404, 725, 785, 987, 1004
Hin6I GCGC 2 cut(s) 171, 484
HinP1I GCGC 2 cut(s) 171, 484
HindIII AAGCTT 2 cut(s) 275, 818
HinfI GANTC 8 cut(s) 19, 296, 328, 350, 511, 699, 778, 869
HpaII CCGG 1 cut(s) 899
HphI GGTGA 6 cut(s) 26, 416, 735, 818, 1063, 1137
Hpy166II GTNNAC 1 cut(s) 545
Hpy188I TCNGA 6 cut(s) 132, 349, 565, 732, 758, 877
Hpy188III TCNNGA 4 cut(s) 534, 603, 899, 1043
Hpy8I GTNNAC 1 cut(s) 545
Hpy99I CGWCG 1 cut(s) 803
HpyAV CCTTC 2 cut(s) 153, 750
HpyCH4III ACNGT 6 cut(s) 14, 81, 458, 549, 678, 799
HpyCH4IV ACGT 2 cut(s) 177, 541
HpyCH4V TGCA 6 cut(s) 100, 506, 656, 862, 925, 1121
HpyF10VI GCNNNNNNNGC 5 cut(s) 106, 115, 665, 859, 938
HpyF3I CTNAG 3 cut(s) 729, 846, 1057
HpySE526I ACGT 2 cut(s) 177, 541
Hsp92II CATG 8 cut(s) 216, 248, 372, 404, 725, 785, 987, 1004
HspAI GCGC 2 cut(s) 171, 484
Kpn2I TCCGGA 1 cut(s) 898
Kzo9I GATC 3 cut(s) 530, 646, 1086
LmnI GCTCC 2 cut(s) 54, 938
Lsp1109I GCAGC 8 cut(s) 84, 130, 301, 304, 403, 668, 940, 944
MaeI CTAG 1 cut(s) 1010
MaeII ACGT 2 cut(s) 177, 541
MaeIII GTNAC 1 cut(s) 958
MalI GATC 3 cut(s) 532, 648, 1088
MboI GATC 3 cut(s) 530, 646, 1086
MflI RGATCY 1 cut(s) 530
MluCI AATT 1 cut(s) 1046
MlyI GAGTC 3 cut(s) 13, 290, 337
MnlI CCTC 8 cut(s) 215, 266, 613, 689, 738, 756, 802, 883
MroI TCCGGA 1 cut(s) 898
MseI TTAA 6 cut(s) 419, 447, 608, 834, 915, 978
MslI CAYNNNNRTG 2 cut(s) 152, 988
MspA1I CMGCKG 1 cut(s) 668
MspI CCGG 1 cut(s) 899
Mva1269I GAATGC 1 cut(s) 946
MwoI GCNNNNNNNGC 5 cut(s) 106, 115, 665, 859, 938
NdeII GATC 3 cut(s) 530, 646, 1086
NlaIII CATG 8 cut(s) 216, 248, 372, 404, 725, 785, 987, 1004
NspI RCATGY 1 cut(s) 372
PceI AGGCCT 1 cut(s) 1014
PciI ACATGT 1 cut(s) 368
PctI GAATGC 1 cut(s) 946
PfeI GAWTC 5 cut(s) 350, 511, 699, 778, 869
PleI GAGTC 3 cut(s) 13, 290, 336
PpsI GAGTC 3 cut(s) 13, 290, 336
PscI ACATGT 1 cut(s) 368
PspFI CCCAGC 1 cut(s) 57
PspPI GGNCC 1 cut(s) 710
PstNI CAGNNNCTG 1 cut(s) 353
PsuI RGATCY 1 cut(s) 530
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
RseI CAYNNNNRTG 2 cut(s) 152, 988
SaqAI TTAA 6 cut(s) 419, 447, 608, 834, 915, 978
Sau3AI GATC 3 cut(s) 530, 646, 1086
Sau96I GGNCC 1 cut(s) 710
SchI GAGTC 3 cut(s) 13, 290, 337
SfcI CTRYAG 1 cut(s) 768
SmiMI CAYNNNNRTG 2 cut(s) 152, 988
SmlI CTYRAG 2 cut(s) 21, 309
SmoI CTYRAG 2 cut(s) 21, 309
Sse9I AATT 1 cut(s) 1046
SseBI AGGCCT 1 cut(s) 1014
SsiI CCGC 6 cut(s) 116, 168, 666, 705, 708, 1101
SspMI CTAG 1 cut(s) 1010
StuI AGGCCT 1 cut(s) 1014
StyI CCWWGG 1 cut(s) 1015
TaaI ACNGT 6 cut(s) 14, 81, 458, 549, 678, 799
TaiI ACGT 2 cut(s) 180, 544
TaqI TCGA 1 cut(s) 801
TasI AATT 1 cut(s) 1046
TauI GCSGC 3 cut(s) 171, 708, 711
TfiI GAWTC 5 cut(s) 350, 511, 699, 778, 869
Tru1I TTAA 6 cut(s) 419, 447, 608, 834, 915, 978
Tru9I TTAA 6 cut(s) 419, 447, 608, 834, 915, 978
TscAI CASTG 1 cut(s) 463
TseI GCWGC 8 cut(s) 97, 118, 314, 317, 391, 656, 932, 953
TspDTI ATGAA 2 cut(s) 45, 710
TspGWI ACGGA 2 cut(s) 86, 90
TspRI CASTG 1 cut(s) 463
XceI RCATGY 1 cut(s) 372
XcmI CCANNNNNNNNNTGG 1 cut(s) 1045
XspI CTAG 1 cut(s) 1010
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.