Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000780.1

Orthogroup ID

OG0006605

Physical Location & Seq

Genomic Coordinates Reverse (-)

112045 .. 114531

Gene Structure 2487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000780.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

atggaagagaatgaagaaggcagggtaaaaaacgaagaagaagaagaagagcaacaagtatggagttggggggcaggaacggacgggcagcttggcacgggcaggctacaagatgagctcctccctcagttgcttcgtctaccttctctctccgccgtgggatccatctctctcctcgcctgcggcggcgctcacgttctcgccttaacatcaggtgggaaggtgctgacatggggaagaggcacatctggtcagcttggtcattctgatagggttaatagcccacatcccaagcttgtaatgtctttggacacctacttcattacgcatgcttctgctggctggaaccactcgggtttcgtttcagatgcgggggatgttttcacatgtggagatggctcatttggtcagctcgggcatggtgattatagtttacattgcagtcctgtcaaagtctctttctttgatgaccattgtgttgagcagatagcatgtggtatgcgccattctcttgttttgctgaaaggtgattcaggagatgaagtatacgggtttggctccaggaagcgtggtcaacttggtatctccaaggataagatcaagtcaattagtcttcctgaacaaatttatggacttgaaggtgtaaaagttactagcatcattgcaaatggagatcaaagtgcagcattatctgctgatgggcatatgtacacttggggaaaagggtttggtggcacttcaagtgctcactccccacagtctttacctacatcggtatggtttaccaaagctgctgttggatggaatcatgctttattattaactgctggtggagaagttttcatgctcggtggaaatcaccatggagtccttggtaatcctgacaaaatgactccagccaggctcttagcagattcaggagaagctatcctggataaagtccctggtcttgaagagaataagatcatggacattgcagccggggctgagcactctgttattgtcacagatgatggagaaattaagacatggggctggggtgaacatggtcagcttggcttgggaaatacatgcgatcaaacaactcctcaagaagcgagtctcggacccaaatctcggaaagaagctgctgcaatcaagatttactgtggtagtgggttcacaatggctgtaagaacaccgcatcttccttctcagactgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

RCC1 RRM_1

Protein Analysis

401

Amino Acids

42.4

Weight (kDa)

5.4

Isoelectric Point (pI)

31.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27060
fragaria_vesca	FvH4_4g32090 FvH4_4g32090 FvH4_4g32090 FvH4_4g32090 FvH4_4g32090 FvH4_4g32090 FvH4_4g32090
malus_domestica	MD16G1079700.v1.1
prunus_persica	Prupe.1G267000_v2.0.a1
pyrus_communis	pycom01g03630 pycom16g06880
rosa_chinensis	RchiOBHm_Chr4g0440781
rosa_laevigata	RLG00000006154
rosa_multiflora	Rmu_sc0000424.1_g000006 Rmu_sc0000780.1_g000020 Rmu_sc0022158.1_g000002
rosa_roxburghii	Rroxscaffold_5G00381540
rosa_rugosa	Rorug04G0327800 Rorug04G0327800 Rorug04G0327900
rosa_samantha	Rh4AG379700 Rh4BG392600 Rh4CG407400 Rh4DG386400
rosa_wichuraiana	Rw4G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	139, 546
AciI	CCGC	5 cut(s)	153, 183, 186, 371, 1181
AclWI	GGATC	2 cut(s)	156, 169
AcsI	RAATTY	1 cut(s)	624
AfaI	GTAC	1 cut(s)	710
AfiI	CCNNNNNNNGG	1 cut(s)	1116
AflIII	ACRYGT	1 cut(s)	386
AgsI	TTSAA	3 cut(s)	638, 741, 953
AjnI	CCWGG	4 cut(s)	560, 899, 930, 943
AluBI	AGCT	9 cut(s)	91, 118, 256, 295, 412, 791, 926, 1054, 1127
AluI	AGCT	9 cut(s)	91, 118, 256, 295, 412, 791, 926, 1054, 1127
Alw21I	GWGCWC	3 cut(s)	120, 748, 993
Alw26I	GTCTC	2 cut(s)	460, 1106
AlwI	GGATC	2 cut(s)	156, 169
Ama87I	CYCGRG	2 cut(s)	352, 413
ApeKI	GCWGC	6 cut(s)	88, 683, 791, 977, 1127, 1130
ApoI	RAATTY	1 cut(s)	624
AspLEI	GCGC	2 cut(s)	191, 504
AspS9I	GGNCC	1 cut(s)	1106
AsuC2I	CCSGG	1 cut(s)	982
AsuHPI	GGTGA	4 cut(s)	434, 539, 851, 1052
AvaI	CYCGRG	2 cut(s)	352, 413
AvaII	GGWCC	1 cut(s)	1106
BamHI	GGATCC	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	120
BbsI	GAAGAC	1 cut(s)	605
Bbv12I	GWGCWC	3 cut(s)	120, 748, 993
BbvI	GCAGC	6 cut(s)	100, 695, 778, 989, 1114, 1117
BccI	CCATC	5 cut(s)	173, 389, 692, 795, 1007
BceAI	ACGGC	1 cut(s)	140
BciT130I	CCWGG	4 cut(s)	562, 901, 932, 945
BcnI	CCSGG	1 cut(s)	982
BcoDI	GTCTC	2 cut(s)	460, 1106
BfaI	CTAG	1 cut(s)	654
BfoI	RGCGCY	1 cut(s)	192
BisI	GCNGC	8 cut(s)	89, 184, 187, 684, 792, 978, 1128, 1131
BlpI	GCTNAGC	1 cut(s)	987
BlsI	GCNGC	8 cut(s)	90, 185, 188, 685, 793, 979, 1129, 1132
Bme1390I	CCNGG	5 cut(s)	562, 901, 932, 945, 982
Bme18I	GGWCC	1 cut(s)	1106
BmeT110I	CYCGRG	2 cut(s)	352, 413
BmgT120I	GGNCC	1 cut(s)	1106
BmiI	GGNNCC	4 cut(s)	163, 347, 559, 1108
BmrFI	CCNGG	5 cut(s)	562, 901, 932, 945, 982
BmsI	GCATC	3 cut(s)	358, 666, 1192
BpiI	GAAGAC	1 cut(s)	605
BpmI	CTGGAG	2 cut(s)	544, 879
Bpu1102I	GCTNAGC	1 cut(s)	987
BpuEI	CTTGAG	1 cut(s)	1074
BpuMI	CCSGG	1 cut(s)	982
BsaJI	CCNNGG	6 cut(s)	156, 588, 862, 871, 943, 981
BsaXI	ACNNNNNCTCC	2 cut(s)	528, 558
Bsc4I	CCNNNNNNNGG	1 cut(s)	1116
Bse3DI	GCAATG	3 cut(s)	436, 660, 972
BseBI	CCWGG	4 cut(s)	562, 901, 932, 945
BseDI	CCNNGG	6 cut(s)	156, 588, 862, 871, 943, 981
BseGI	GGATG	3 cut(s)	286, 382, 806
BseLI	CCNNNNNNNGG	1 cut(s)	1116
BseMI	GCAATG	3 cut(s)	436, 660, 972
BseMII	CTCAG	2 cut(s)	140, 978
BseRI	GAGGAG	3 cut(s)	110, 164, 1077
BseXI	GCAGC	6 cut(s)	100, 695, 778, 989, 1114, 1117
BseYI	CCCAGC	1 cut(s)	1035
BsgI	GTGCAG	1 cut(s)	702
BsiHKAI	GWGCWC	3 cut(s)	120, 748, 993
BsiHKCI	CYCGRG	2 cut(s)	352, 413
BsiSI	CCGG	1 cut(s)	981
BslFI	GGGAC	1 cut(s)	926
BslI	CCNNNNNNNGG	1 cut(s)	1116
BsmAI	GTCTC	2 cut(s)	460, 1106
BsmFI	GGGAC	1 cut(s)	926
BsoBI	CYCGRG	2 cut(s)	352, 413
Bsp1286I	GDGCHC	3 cut(s)	120, 748, 993
Bsp1407I	TGTACA	1 cut(s)	708
Bsp143I	GATC	5 cut(s)	161, 597, 673, 963, 1075
Bsp1720I	GCTNAGC	1 cut(s)	987
Bsp19I	CCATGG	1 cut(s)	862
BspACI	CCGC	5 cut(s)	153, 183, 186, 371, 1181
BspCNI	CTCAG	2 cut(s)	139, 979
BspLI	GGNNCC	4 cut(s)	163, 347, 559, 1108
BspPI	GGATC	2 cut(s)	156, 169
BspQI	GCTCTTC	1 cut(s)	42
BsrDI	GCAATG	3 cut(s)	436, 660, 972
BsrGI	TGTACA	1 cut(s)	708
BssECI	CCNNGG	6 cut(s)	156, 588, 862, 871, 943, 981
BssMI	GATC	5 cut(s)	161, 597, 673, 963, 1075
BssNAI	GTATAC	1 cut(s)	547
BssT1I	CCWWGG	3 cut(s)	588, 862, 871
Bst1107I	GTATAC	1 cut(s)	547
Bst2UI	CCWGG	4 cut(s)	562, 901, 932, 945
Bst4CI	ACNGT	2 cut(s)	759, 1148
Bst6I	CTCTTC	3 cut(s)	42, 232, 948
BstAPI	GCANNNNNTGC	1 cut(s)	692
BstAUI	TGTACA	1 cut(s)	708
BstC8I	GCNNGC	4 cut(s)	104, 181, 330, 340
BstDEI	CTNAG	4 cut(s)	126, 907, 987, 1194
BstDSI	CCRYGG	2 cut(s)	156, 862
BstF5I	GGATG	3 cut(s)	286, 382, 806
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	2 cut(s)	191, 504
BstKTI	GATC	5 cut(s)	164, 600, 676, 966, 1078
BstMAI	GTCTC	2 cut(s)	460, 1106
BstMBI	GATC	5 cut(s)	161, 597, 673, 963, 1075
BstMWI	GCNNNNNNNGC	2 cut(s)	692, 983
BstNI	CCWGG	4 cut(s)	562, 901, 932, 945
BstNSI	RCATGY	4 cut(s)	332, 390, 495, 1074
BstSCI	CCNGG	5 cut(s)	560, 899, 930, 943, 980
BstV1I	GCAGC	6 cut(s)	100, 695, 778, 989, 1114, 1117
BstV2I	GAAGAC	1 cut(s)	605
BstX2I	RGATCY	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	161
BstZ17I	GTATAC	1 cut(s)	547
BtgI	CCRYGG	2 cut(s)	156, 862
BtsCI	GGATG	3 cut(s)	286, 382, 806
Cac8I	GCNNGC	4 cut(s)	104, 181, 330, 340
CfoI	GCGC	2 cut(s)	191, 504
Cfr13I	GGNCC	1 cut(s)	1106
Csp6I	GTAC	1 cut(s)	709
CviQI	GTAC	1 cut(s)	709
DdeI	CTNAG	4 cut(s)	126, 907, 987, 1194
DpnI	GATC	5 cut(s)	163, 599, 675, 965, 1077
DpnII	GATC	5 cut(s)	161, 597, 673, 963, 1075
Eam1104I	CTCTTC	3 cut(s)	42, 232, 948
EarI	CTCTTC	3 cut(s)	42, 232, 948
EciI	GGCGGA	1 cut(s)	142
Ecl136II	GAGCTC	1 cut(s)	118
Eco130I	CCWWGG	3 cut(s)	588, 862, 871
Eco24I	GRGCYC	1 cut(s)	120
Eco47I	GGWCC	1 cut(s)	1106
Eco53kI	GAGCTC	1 cut(s)	118
Eco88I	CYCGRG	2 cut(s)	352, 413
EcoICRI	GAGCTC	1 cut(s)	118
EcoRII	CCWGG	4 cut(s)	560, 899, 930, 943
EcoT14I	CCWWGG	3 cut(s)	588, 862, 871
EcoT38I	GRGCYC	1 cut(s)	120
ErhI	CCWWGG	3 cut(s)	588, 862, 871
FaqI	GGGAC	1 cut(s)	926
FauI	CCCGC	1 cut(s)	364
FauNDI	CATATG	1 cut(s)	705
FblI	GTMKAC	2 cut(s)	139, 546
Fnu4HI	GCNGC	8 cut(s)	89, 184, 187, 684, 792, 978, 1128, 1131
FokI	GGATG	3 cut(s)	273, 389, 813
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	8 cut(s)	89, 184, 187, 684, 792, 978, 1128, 1131
FspBI	CTAG	1 cut(s)	654
GlaI	GCGC	2 cut(s)	190, 503
GluI	GCNGC	8 cut(s)	89, 184, 187, 684, 792, 978, 1128, 1131
GsaI	CCCAGC	1 cut(s)	1039
GsuI	CTGGAG	2 cut(s)	544, 879
HaeII	RGCGCY	1 cut(s)	192
HapII	CCGG	1 cut(s)	981
HhaI	GCGC	2 cut(s)	191, 504
Hin6I	GCGC	2 cut(s)	189, 502
HinP1I	GCGC	2 cut(s)	189, 502
HincII	GTYRAC	1 cut(s)	575
HindII	GTYRAC	1 cut(s)	575
HindIII	AAGCTT	1 cut(s)	293
HinfI	GANTC	6 cut(s)	530, 805, 867, 892, 914, 1099
HpaII	CCGG	1 cut(s)	981
HphI	GGTGA	4 cut(s)	434, 539, 851, 1052
Hpy166II	GTNNAC	8 cut(s)	140, 434, 547, 575, 711, 783, 1043, 1161
Hpy188I	TCNGA	5 cut(s)	268, 367, 1106, 1119, 1197
Hpy188III	TCNNGA	7 cut(s)	534, 617, 881, 918, 950, 1091, 1138
Hpy8I	GTNNAC	8 cut(s)	140, 434, 547, 575, 711, 783, 1043, 1161
HpyAV	CCTTC	5 cut(s)	11, 153, 214, 632, 1200
HpyCH4III	ACNGT	2 cut(s)	759, 1148
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	5 cut(s)	441, 665, 683, 977, 1133
HpyF10VI	GCNNNNNNNGC	2 cut(s)	692, 983
HpyF3I	CTNAG	4 cut(s)	126, 907, 987, 1194
HpySE526I	ACGT	1 cut(s)	195
HspAI	GCGC	2 cut(s)	189, 502
Kzo9I	GATC	5 cut(s)	161, 597, 673, 963, 1075
LguI	GCTCTTC	1 cut(s)	42
LmnI	GCTCC	2 cut(s)	123, 563
Lsp1109I	GCAGC	6 cut(s)	100, 695, 778, 989, 1114, 1117
LweI	GCATC	3 cut(s)	358, 666, 1192
MaeI	CTAG	1 cut(s)	654
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	2 cut(s)	649, 1003
MalI	GATC	5 cut(s)	163, 599, 675, 965, 1077
MboI	GATC	5 cut(s)	161, 597, 673, 963, 1075
MflI	RGATCY	1 cut(s)	161
MhlI	GDGCHC	3 cut(s)	120, 748, 993
MluCI	AATT	3 cut(s)	606, 624, 1020
MlyI	GAGTC	3 cut(s)	876, 886, 1108
MmeI	TCCRAC	1 cut(s)	778
MnlI	CCTC	5 cut(s)	131, 135, 185, 233, 1098
MseI	TTAA	4 cut(s)	206, 276, 821, 1023
MslI	CAYNNNNRTG	1 cut(s)	775
MspI	CCGG	1 cut(s)	981
MspR9I	CCNGG	5 cut(s)	562, 901, 932, 945, 982
MvaI	CCWGG	4 cut(s)	562, 901, 932, 945
MwoI	GCNNNNNNNGC	2 cut(s)	692, 983
NciI	CCSGG	1 cut(s)	982
NcoI	CCATGG	1 cut(s)	862
NdeI	CATATG	1 cut(s)	705
NdeII	GATC	5 cut(s)	161, 597, 673, 963, 1075
NlaIV	GGNNCC	4 cut(s)	163, 347, 559, 1108
NmuCI	GTSAC	1 cut(s)	1003
NspI	RCATGY	4 cut(s)	332, 390, 495, 1074
PaeI	GCATGC	1 cut(s)	332
PciI	ACATGT	1 cut(s)	386
PciSI	GCTCTTC	1 cut(s)	42
PfeI	GAWTC	3 cut(s)	530, 805, 914
PfoI	TCCNGGA	2 cut(s)	560, 930
PkrI	GCNGC	8 cut(s)	90, 185, 188, 685, 793, 979, 1129, 1132
PleI	GAGTC	3 cut(s)	875, 886, 1107
PpsI	GAGTC	3 cut(s)	875, 886, 1107
PscI	ACATGT	1 cut(s)	386
Psp124BI	GAGCTC	1 cut(s)	120
Psp6I	CCWGG	4 cut(s)	560, 899, 930, 943
PspFI	CCCAGC	1 cut(s)	1035
PspGI	CCWGG	4 cut(s)	560, 899, 930, 943
PspN4I	GGNNCC	4 cut(s)	163, 347, 559, 1108
PspPI	GGNCC	1 cut(s)	1106
PsuI	RGATCY	1 cut(s)	161
RsaI	GTAC	1 cut(s)	710
RsaNI	GTAC	1 cut(s)	709
RseI	CAYNNNNRTG	1 cut(s)	775
SacI	GAGCTC	1 cut(s)	120
SapI	GCTCTTC	1 cut(s)	42
SaqAI	TTAA	4 cut(s)	206, 276, 821, 1023
SatI	GCNGC	8 cut(s)	89, 184, 187, 684, 792, 978, 1128, 1131
Sau3AI	GATC	5 cut(s)	161, 597, 673, 963, 1075
Sau96I	GGNCC	1 cut(s)	1106
SchI	GAGTC	3 cut(s)	876, 886, 1108
ScrFI	CCNGG	5 cut(s)	562, 901, 932, 945, 982
SduI	GDGCHC	3 cut(s)	120, 748, 993
SfaNI	GCATC	3 cut(s)	358, 666, 1192
SinI	GGWCC	1 cut(s)	1106
SmiMI	CAYNNNNRTG	1 cut(s)	775
SmlI	CTYRAG	1 cut(s)	1089
SmoI	CTYRAG	1 cut(s)	1089
SphI	GCATGC	1 cut(s)	332
Sse9I	AATT	3 cut(s)	606, 624, 1020
SsiI	CCGC	5 cut(s)	153, 183, 186, 371, 1181
SspMI	CTAG	1 cut(s)	654
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	5 cut(s)	560, 899, 930, 943, 980
StyI	CCWWGG	3 cut(s)	588, 862, 871
TaaI	ACNGT	2 cut(s)	759, 1148
TaiI	ACGT	1 cut(s)	198
TasI	AATT	3 cut(s)	606, 624, 1020
TatI	WGTACW	1 cut(s)	708
TauI	GCSGC	2 cut(s)	186, 189
TfiI	GAWTC	3 cut(s)	530, 805, 914
Tru1I	TTAA	4 cut(s)	206, 276, 821, 1023
Tru9I	TTAA	4 cut(s)	206, 276, 821, 1023
TseFI	GTSAC	1 cut(s)	1003
TseI	GCWGC	6 cut(s)	88, 683, 791, 977, 1127, 1130
Tsp45I	GTSAC	1 cut(s)	1003
TspDTI	ATGAA	4 cut(s)	27, 310, 555, 832
TspGWI	ACGGA	1 cut(s)	95
VpaK11BI	GGWCC	1 cut(s)	1106
XapI	RAATTY	1 cut(s)	624
XceI	RCATGY	4 cut(s)	332, 390, 495, 1074
XcmI	CCANNNNNNNNNTGG	1 cut(s)	869
XmiI	GTMKAC	2 cut(s)	139, 546
XspI	CTAG	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.