Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006605

Physical Location & Seq

Genomic Coordinates Reverse (-)

27468503 .. 27470925

Gene Structure 2423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G267000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGAAGAGAATGAAGAAGGGAAAATAGTGAAGCACGAAGAAGAAGACGAAGAAGGAAGAGAGCAAGAGATATGGAGTTGGGGGGCAGGAACGGACGGGCAGCTGGGCACGGGCAAGCTGCAGGACGAGCTCCTCCCTCAGCTGCTTCACCTCACATCTCTCTCCTCCGCCGGACCCATCTCTTTCCTTGCCTGCGGCGGCGCTCATGTTCTTGCCTTGACCTCCGGTGGGAAGGTACTGACATGGGGAAGAGGCACGGCTGGTCAACTGGGTCATTCTGATACGGTCAATAGTCCACATCCCAAGCTTGTTATGTCTTTGAACAACTACTTCATTACTCATGTTTCTGCTGGTTGGAACCACTCTGGTTTCGTTTCAGATACAGGGGCTCTTTTTACATGTGGAGACGGCACATTTGGTCAGCTCGGGCATGGCGATTACAGGTTACATTGCTACCCTGTCAAAGTCTCCTTCTTTGCTAGTAAGCACGTGGAACAGATAGCATGTGGAATGCGCCATTCCCTTGTTTTGCTGAGAGGAGATGAAGTTTATGGGTTTGGTTCTGGGAAGCGTGGTCAACTGGGTATCGCCAAGGATAAAATCAATTTAGTTAGTCTTCCTGAACGAAGTTGTGGATTTGAAGGTGTAAAGATCGCTAGCATCACTGCAAATGGAGATCATAGTGCAGCATTATCTGCTGATGGGCATTTGTACACTTGGGGAAGAGGGTTTGGCGACACTTTAAGTGCTAAAACGCCACAGCATTTACCTACATCATTCTGCTTTACCAAAATTGCTCTTGGATGGAATCATGCTTTAGTTTTAACTGGTGGAGAGGTTTTTATGTTTGGTGGAAATCACCATGGAGTCCTTAGTAATCCTGATAAAATGACTCCAGTCAAGCACTCAGCCGATTCAAGAGCAGATTCAAGAGCAGTTGTCCTGGAGAAAGTCCCTGGGCTTGAAGGGAGTAGAACTCTGCACATTGCAGCTGGAGCTGAGCACTCTGCTATTGTAACAGAGAATGGGGTACTTAAGACATGGGGATGGGGTGAACATGGTCAGCTTGGCTTGGGAAATATAAGTGATCAAACGAGTCCTCAAGAAGTGAGTCTCAGCCACAAATTTCGGAAAGAAGCCAGCTTAATTGAGATTTACTGTGGCAGTGGTTTTACAATTGCAATAAGAACTTCGTGTCGCCCTTCTCAGGCTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

RCC1 RRM_1

Protein Analysis

406

Amino Acids

43.16

Weight (kDa)

6.25

Isoelectric Point (pI)

29.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27060
fragaria_vesca	FvH4_4g32090 FvH4_4g32090 FvH4_4g32090 FvH4_4g32090 FvH4_4g32090 FvH4_4g32090 FvH4_4g32090
malus_domestica	MD16G1079700.v1.1
prunus_persica	Prupe.1G267000_v2.0.a1
pyrus_communis	pycom01g03630 pycom16g06880
rosa_chinensis	RchiOBHm_Chr4g0440781
rosa_laevigata	RLG00000006154
rosa_multiflora	Rmu_sc0000424.1_g000006 Rmu_sc0000780.1_g000020 Rmu_sc0022158.1_g000002
rosa_roxburghii	Rroxscaffold_5G00381540
rosa_rugosa	Rorug04G0327800 Rorug04G0327800 Rorug04G0327900
rosa_samantha	Rh4AG379700 Rh4BG392600 Rh4CG407400 Rh4DG386400
rosa_wichuraiana	Rw4G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	168, 195, 198
AcsI	RAATTY	1 cut(s)	1124
AcvI	CACGTG	1 cut(s)	490
AfaI	GTAC	3 cut(s)	237, 713, 1032
AfiI	CCNNNNNNNGG	2 cut(s)	228, 1207
AflII	CTTAAG	1 cut(s)	1034
AflIII	ACRYGT	1 cut(s)	398
AgsI	TTSAA	5 cut(s)	322, 641, 918, 930, 965
AjnI	CCWGG	2 cut(s)	942, 955
Alw21I	GWGCWC	2 cut(s)	132, 1005
Alw26I	GTCTC	3 cut(s)	399, 472, 1118
Ama87I	CYCGRG	1 cut(s)	425
ApeKI	GCWGC	5 cut(s)	100, 118, 142, 686, 989
ApoI	RAATTY	1 cut(s)	1124
ArsI	GACNNNNNNTTYG	2 cut(s)	398, 430
AspLEI	GCGC	2 cut(s)	203, 516
AspS9I	GGNCC	1 cut(s)	173
AsuHPI	GGTGA	3 cut(s)	140, 851, 1064
AsuNHI	GCTAGC	1 cut(s)	656
AvaI	CYCGRG	1 cut(s)	425
AvaII	GGWCC	1 cut(s)	173
BaeGI	GKGCMC	1 cut(s)	110
BanII	GRGCYC	2 cut(s)	132, 391
BbrPI	CACGTG	1 cut(s)	490
BbsI	GAAGAC	2 cut(s)	51, 608
Bbv12I	GWGCWC	2 cut(s)	132, 1005
BbvCI	CCTCAGC	1 cut(s)	138
BbvI	GCAGC	5 cut(s)	105, 112, 129, 698, 1001
BccI	CCATC	4 cut(s)	185, 695, 798, 1041
BceAI	ACGGC	2 cut(s)	273, 424
BciT130I	CCWGG	2 cut(s)	944, 957
BclI	TGATCA	1 cut(s)	1087
BcoDI	GTCTC	3 cut(s)	399, 472, 1118
BfaI	CTAG	2 cut(s)	480, 657
BfmI	CTRYAG	1 cut(s)	119
BfoI	RGCGCY	1 cut(s)	204
BfrI	CTTAAG	1 cut(s)	1034
BisI	GCNGC	7 cut(s)	101, 119, 143, 196, 199, 687, 990
BlpI	GCTNAGC	1 cut(s)	999
BlsI	GCNGC	7 cut(s)	102, 120, 144, 197, 200, 688, 991
Bme1390I	CCNGG	2 cut(s)	944, 957
Bme18I	GGWCC	1 cut(s)	173
BmeT110I	CYCGRG	1 cut(s)	425
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	2 cut(s)	175, 359
BmrFI	CCNGG	2 cut(s)	944, 957
BmrI	ACTGGG	2 cut(s)	278, 590
BmsI	GCATC	1 cut(s)	669
BmtI	GCTAGC	1 cut(s)	660
BmuI	ACTGGG	2 cut(s)	278, 590
BoxI	GACNNNNGTC	1 cut(s)	896
BpiI	GAAGAC	2 cut(s)	51, 608
BplI	GAGNNNNNCTC	2 cut(s)	961, 993
BpmI	CTGGAG	3 cut(s)	879, 965, 1014
Bpu10I	CCTNAGC	1 cut(s)	138
Bpu1102I	GCTNAGC	1 cut(s)	999
BpuEI	CTTGAG	1 cut(s)	1086
BsaAI	YACGTR	1 cut(s)	490
BsaJI	CCNNGG	4 cut(s)	591, 862, 955, 956
BsaWI	WCCGGW	1 cut(s)	224
BsaXI	ACNNNNNCTCC	2 cut(s)	531, 561
Bsc4I	CCNNNNNNNGG	2 cut(s)	228, 1207
Bse1I	ACTGG	4 cut(s)	273, 585, 832, 896
Bse3DI	GCAATG	2 cut(s)	448, 984
BseBI	CCWGG	2 cut(s)	944, 957
BseDI	CCNNGG	4 cut(s)	591, 862, 955, 956
BseGI	GGATG	3 cut(s)	298, 809, 1052
BseLI	CCNNNNNNNGG	2 cut(s)	228, 1207
BseMI	GCAATG	2 cut(s)	448, 984
BseMII	CTCAG	5 cut(s)	152, 524, 921, 990, 1129
BseNI	ACTGG	4 cut(s)	273, 585, 832, 896
BseRI	GAGGAG	3 cut(s)	122, 154, 552
BseSI	GKGCMC	1 cut(s)	110
BseXI	GCAGC	5 cut(s)	105, 112, 129, 698, 1001
BseYI	CCCAGC	1 cut(s)	103
BsgI	GTGCAG	2 cut(s)	705, 965
BsiHKAI	GWGCWC	2 cut(s)	132, 1005
BsiHKCI	CYCGRG	1 cut(s)	425
BsiSI	CCGG	2 cut(s)	171, 225
BslFI	GGGAC	1 cut(s)	938
BslI	CCNNNNNNNGG	2 cut(s)	228, 1207
BsmAI	GTCTC	3 cut(s)	399, 472, 1118
BsmBI	CGTCTC	1 cut(s)	399
BsmFI	GGGAC	1 cut(s)	938
BsmI	GAATGC	1 cut(s)	516
BsoBI	CYCGRG	1 cut(s)	425
Bsp1286I	GDGCHC	4 cut(s)	110, 132, 391, 1005
Bsp1407I	TGTACA	1 cut(s)	711
Bsp143I	GATC	3 cut(s)	651, 676, 1087
Bsp1720I	GCTNAGC	1 cut(s)	999
Bsp19I	CCATGG	1 cut(s)	862
BspACI	CCGC	3 cut(s)	168, 195, 198
BspCNI	CTCAG	5 cut(s)	151, 525, 920, 991, 1128
BspLI	GGNNCC	2 cut(s)	175, 359
BspMAI	CTGCAG	1 cut(s)	123
BspOI	GCTAGC	1 cut(s)	660
BspTI	CTTAAG	1 cut(s)	1034
BsrDI	GCAATG	2 cut(s)	448, 984
BsrGI	TGTACA	1 cut(s)	711
BsrI	ACTGG	4 cut(s)	273, 585, 832, 896
BssECI	CCNNGG	4 cut(s)	591, 862, 955, 956
BssMI	GATC	3 cut(s)	651, 676, 1087
BssT1I	CCWWGG	2 cut(s)	591, 862
Bst2UI	CCWGG	2 cut(s)	944, 957
Bst4CI	ACNGT	2 cut(s)	286, 1160
Bst6I	CTCTTC	3 cut(s)	52, 244, 718
BstAFI	CTTAAG	1 cut(s)	1034
BstAPI	GCANNNNNTGC	1 cut(s)	695
BstAUI	TGTACA	1 cut(s)	711
BstBAI	YACGTR	1 cut(s)	490
BstC8I	GCNNGC	4 cut(s)	116, 193, 658, 1141
BstDEI	CTNAG	7 cut(s)	138, 533, 872, 907, 999, 1115, 1206
BstDSI	CCRYGG	1 cut(s)	862
BstF5I	GGATG	3 cut(s)	298, 809, 1052
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	2 cut(s)	203, 516
BstKTI	GATC	3 cut(s)	654, 679, 1090
BstMAI	GTCTC	3 cut(s)	399, 472, 1118
BstMBI	GATC	3 cut(s)	651, 676, 1087
BstMWI	GCNNNNNNNGC	3 cut(s)	127, 695, 995
BstNI	CCWGG	2 cut(s)	944, 957
BstNSI	RCATGY	2 cut(s)	402, 507
BstPAI	GACNNNNGTC	1 cut(s)	896
BstSCI	CCNGG	2 cut(s)	942, 955
BstSFI	CTRYAG	1 cut(s)	119
BstSLI	GKGCMC	1 cut(s)	110
BstV1I	GCAGC	5 cut(s)	105, 112, 129, 698, 1001
BstV2I	GAAGAC	2 cut(s)	51, 608
BtgI	CCRYGG	1 cut(s)	862
BtsCI	GGATG	3 cut(s)	298, 809, 1052
BtsI	GCAGTG	2 cut(s)	663, 1171
BtsIMutI	CAGTG	2 cut(s)	663, 1171
Cac8I	GCNNGC	4 cut(s)	116, 193, 658, 1141
CfoI	GCGC	2 cut(s)	203, 516
Cfr13I	GGNCC	1 cut(s)	173
Csp6I	GTAC	3 cut(s)	236, 712, 1031
CviQI	GTAC	3 cut(s)	236, 712, 1031
DdeI	CTNAG	7 cut(s)	138, 533, 872, 907, 999, 1115, 1206
DpnI	GATC	3 cut(s)	653, 678, 1089
DpnII	GATC	3 cut(s)	651, 676, 1087
Eam1104I	CTCTTC	3 cut(s)	52, 244, 718
EarI	CTCTTC	3 cut(s)	52, 244, 718
EciI	GGCGGA	1 cut(s)	157
Ecl136II	GAGCTC	1 cut(s)	130
Eco130I	CCWWGG	2 cut(s)	591, 862
Eco24I	GRGCYC	2 cut(s)	132, 391
Eco47I	GGWCC	1 cut(s)	173
Eco53kI	GAGCTC	1 cut(s)	130
Eco72I	CACGTG	1 cut(s)	490
Eco88I	CYCGRG	1 cut(s)	425
EcoICRI	GAGCTC	1 cut(s)	130
EcoRII	CCWGG	2 cut(s)	942, 955
EcoT14I	CCWWGG	2 cut(s)	591, 862
EcoT38I	GRGCYC	2 cut(s)	132, 391
ErhI	CCWWGG	2 cut(s)	591, 862
Esp3I	CGTCTC	1 cut(s)	399
FaqI	GGGAC	1 cut(s)	938
FbaI	TGATCA	1 cut(s)	1087
Fnu4HI	GCNGC	7 cut(s)	101, 119, 143, 196, 199, 687, 990
FokI	GGATG	3 cut(s)	285, 816, 1059
FriOI	GRGCYC	2 cut(s)	132, 391
Fsp4HI	GCNGC	7 cut(s)	101, 119, 143, 196, 199, 687, 990
FspBI	CTAG	2 cut(s)	480, 657
GlaI	GCGC	2 cut(s)	202, 515
GluI	GCNGC	7 cut(s)	101, 119, 143, 196, 199, 687, 990
GsaI	CCCAGC	1 cut(s)	107
GsuI	CTGGAG	3 cut(s)	879, 965, 1014
HaeII	RGCGCY	1 cut(s)	204
HapII	CCGG	2 cut(s)	171, 225
HhaI	GCGC	2 cut(s)	203, 516
Hin6I	GCGC	2 cut(s)	201, 514
HinP1I	GCGC	2 cut(s)	201, 514
HincII	GTYRAC	2 cut(s)	266, 578
HindII	GTYRAC	2 cut(s)	266, 578
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	7 cut(s)	808, 867, 892, 914, 926, 1096, 1111
HpaII	CCGG	2 cut(s)	171, 225
HphI	GGTGA	3 cut(s)	140, 851, 1064
Hpy166II	GTNNAC	5 cut(s)	266, 296, 578, 714, 1055
Hpy188I	TCNGA	3 cut(s)	280, 379, 1131
Hpy188III	TCNNGA	5 cut(s)	620, 881, 918, 930, 1103
Hpy8I	GTNNAC	5 cut(s)	266, 296, 578, 714, 1055
HpyAV	CCTTC	7 cut(s)	11, 47, 226, 481, 635, 959, 1212
HpyCH4III	ACNGT	2 cut(s)	286, 1160
HpyCH4IV	ACGT	1 cut(s)	489
HpyCH4V	TGCA	6 cut(s)	121, 668, 686, 982, 989, 1181
HpyF10VI	GCNNNNNNNGC	3 cut(s)	127, 695, 995
HpyF3I	CTNAG	7 cut(s)	138, 533, 872, 907, 999, 1115, 1206
HpySE526I	ACGT	1 cut(s)	489
HspAI	GCGC	2 cut(s)	201, 514
Ksp22I	TGATCA	1 cut(s)	1087
Kzo9I	GATC	3 cut(s)	651, 676, 1087
LmnI	GCTCC	2 cut(s)	135, 995
Lsp1109I	GCAGC	5 cut(s)	105, 112, 129, 698, 1001
LweI	GCATC	1 cut(s)	669
MaeI	CTAG	2 cut(s)	480, 657
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	2 cut(s)	444, 1015
MalI	GATC	3 cut(s)	653, 678, 1089
MboI	GATC	3 cut(s)	651, 676, 1087
MfeI	CAATTG	1 cut(s)	1176
MhlI	GDGCHC	4 cut(s)	110, 132, 391, 1005
MluCI	AATT	5 cut(s)	604, 792, 1124, 1146, 1176
MlyI	GAGTC	4 cut(s)	876, 886, 1105, 1120
MmeI	TCCRAC	1 cut(s)	335
MseI	TTAA	5 cut(s)	743, 824, 1035, 1145, 1216
MslI	CAYNNNNRTG	1 cut(s)	1045
MspA1I	CMGCKG	3 cut(s)	103, 142, 992
MspCI	CTTAAG	1 cut(s)	1034
MspI	CCGG	2 cut(s)	171, 225
MspR9I	CCNGG	2 cut(s)	944, 957
MunI	CAATTG	1 cut(s)	1176
Mva1269I	GAATGC	1 cut(s)	516
MvaI	CCWGG	2 cut(s)	944, 957
MwoI	GCNNNNNNNGC	3 cut(s)	127, 695, 995
NcoI	CCATGG	1 cut(s)	862
NdeII	GATC	3 cut(s)	651, 676, 1087
NheI	GCTAGC	1 cut(s)	656
NlaIV	GGNNCC	2 cut(s)	175, 359
NspI	RCATGY	2 cut(s)	402, 507
PasI	CCCWGGG	1 cut(s)	956
PciI	ACATGT	1 cut(s)	398
PcsI	WCGNNNNNNNCGW	1 cut(s)	432
PctI	GAATGC	1 cut(s)	516
PfeI	GAWTC	3 cut(s)	808, 914, 926
PfoI	TCCNGGA	1 cut(s)	942
PkrI	GCNGC	7 cut(s)	102, 120, 144, 197, 200, 688, 991
PleI	GAGTC	4 cut(s)	875, 886, 1104, 1119
PmaCI	CACGTG	1 cut(s)	490
PmlI	CACGTG	1 cut(s)	490
PpsI	GAGTC	4 cut(s)	875, 886, 1104, 1119
Ppu21I	YACGTR	1 cut(s)	490
PscI	ACATGT	1 cut(s)	398
PshAI	GACNNNNGTC	1 cut(s)	896
Psp124BI	GAGCTC	1 cut(s)	132
Psp6I	CCWGG	2 cut(s)	942, 955
PspCI	CACGTG	1 cut(s)	490
PspFI	CCCAGC	1 cut(s)	103
PspGI	CCWGG	2 cut(s)	942, 955
PspN4I	GGNNCC	2 cut(s)	175, 359
PspPI	GGNCC	1 cut(s)	173
PstI	CTGCAG	1 cut(s)	123
PvuII	CAGCTG	3 cut(s)	103, 142, 992
RsaI	GTAC	3 cut(s)	237, 713, 1032
RsaNI	GTAC	3 cut(s)	236, 712, 1031
RseI	CAYNNNNRTG	1 cut(s)	1045
SacI	GAGCTC	1 cut(s)	132
SaqAI	TTAA	5 cut(s)	743, 824, 1035, 1145, 1216
SatI	GCNGC	7 cut(s)	101, 119, 143, 196, 199, 687, 990
Sau3AI	GATC	3 cut(s)	651, 676, 1087
Sau96I	GGNCC	1 cut(s)	173
SchI	GAGTC	4 cut(s)	876, 886, 1105, 1120
ScrFI	CCNGG	2 cut(s)	944, 957
SduI	GDGCHC	4 cut(s)	110, 132, 391, 1005
SfaNI	GCATC	1 cut(s)	669
SfcI	CTRYAG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	1045
SmlI	CTYRAG	2 cut(s)	1034, 1101
SmoI	CTYRAG	2 cut(s)	1034, 1101
Sse9I	AATT	5 cut(s)	604, 792, 1124, 1146, 1176
SsiI	CCGC	3 cut(s)	168, 195, 198
SspMI	CTAG	2 cut(s)	480, 657
SstI	GAGCTC	1 cut(s)	132
StyD4I	CCNGG	2 cut(s)	942, 955
StyI	CCWWGG	2 cut(s)	591, 862
TaaI	ACNGT	2 cut(s)	286, 1160
TaiI	ACGT	1 cut(s)	492
TasI	AATT	5 cut(s)	604, 792, 1124, 1146, 1176
TatI	WGTACW	1 cut(s)	711
TauI	GCSGC	2 cut(s)	198, 201
TfiI	GAWTC	3 cut(s)	808, 914, 926
Tru1I	TTAA	5 cut(s)	743, 824, 1035, 1145, 1216
Tru9I	TTAA	5 cut(s)	743, 824, 1035, 1145, 1216
TscAI	CASTG	2 cut(s)	670, 1171
TseI	GCWGC	5 cut(s)	100, 118, 142, 686, 989
TspDTI	ATGAA	3 cut(s)	27, 322, 558
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	2 cut(s)	670, 1171
Vha464I	CTTAAG	1 cut(s)	1034
VpaK11BI	GGWCC	1 cut(s)	173
XapI	RAATTY	1 cut(s)	1124
XceI	RCATGY	2 cut(s)	402, 507
XspI	CTAG	2 cut(s)	480, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.