Rroxscaffold_5G00381540

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0006605
Physical Location & Seq
Forward (+)
61472204 .. 61475103
2900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00381540.1

Sequence Viewer

Length: 1194 bp
ATGGAGTTGGGGGCAGGAACGGACGGGCAGCTGGGCACGGGCAGGCTACAGGATGAGCTTCTCCCTCGGTTGCTTCGTCTACCTTCTCTCTCCGCCGTGGGACCCATCTCTCTCCTCGCCTGCGGCGGCGCTCACGTTCTCGCCTTAACATCAGGTGGGAAGGTGCTGACATGGGGAAGAGGCACATCTGGTCAGCTTGGTCATTCTGATAGGGTTAATAGCCCACATCCCAAGCTTGTAATGTCTTTGGTCACCTACTTCATTACGCATGCTTCTGCTGGCTGGAACCACTCGGGTTTCGTTTCAGGTATGTTCAGGAAGTTGATGTTAGTCCCTTGCTGGAGAATGTTGATTGAATCTGTGCTAGAAGGGACTTTGCAGTATGGGCCTTGTGCAACTTATTTCAGGTTTTTGGCTTTCCTTGGTTTGTTCTCAGATGCGGGGGATGTTTTCACATGTGGAGATGGCTCATTTGGTCAGCTCGGGCATGGTGATTATAGTTTACATTGCAGTCCTGTCAAAGTCTCTTTCTTTGATGACCATTGTGTTGAGCAGATAGCATGTGGTATGCGCCATTCTCTTGTTTTGCTGAAAGGTAATTGCAAGGCTGGTGATTCAGGAGATGAAGTATACGGGTTTGGCTCCGGGAAGCGTGGTCAACTTGGTATCTCCAAGGATCAGATCAAGTCAATTAGTCTTCCTGAACGAATTTATGGACTTGAAGGTGTAAAAGTTACTAGCATCATTGCAAATGGAGATCAAAGTGCAGCATTATCTGCTGATGGGCATATGTACACTTGGGGAAAAGGGTTTGGTGGCACTTCAAGTGCTCACTCCCCACAGTCTTTACCTACATCGTTATGGTTTACCAAAGCTGCTGTTGGATGGAATCATTCTTTATTATTAACTGCTGGTGGAGAAGTTTTCATGCTCGGTGGAAATCGCCATGGAGTCCTTGGCAATCCTGACAAAATGACTCCAGCCAGGCTCTTAGCAGATGATGGAGAAATTAAGACATGGGGCTGGGGTGAACATGGTCAGCTTGGCTTGGGAAATACATGCGATCAAACAACTCCTCAAGAAGTGAGTCTCGGACACAAATCTCGGAAAGAAGCTGCTGCAATCAAGATTTACTGTGGTAGTGGGTTCACAATGGCTGTAAGAACACCGCATCTTCCTTCTCAGACTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
RCC1 RRM_1

Protein Analysis

397

Amino Acids

42.1

Weight (kDa)

7.25

Isoelectric Point (pI)

26.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 3 - 102 1.5e-17 RCC1-like domain
RCC1 PF00415 4 - 49 2.8e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 38 - 65 1.2e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 53 - 100 4.3e-13 Regulator of chromosome condensation (RCC1) repeat
WD40_RLD PF25390 144 - 272 1e-24 RCC1-like domain
RCC1 PF00415 148 - 196 2.2e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 209 - 258 9e-07 Regulator of chromosome condensation (RCC1) repeat
WD40_RLD PF25390 271 - 322 1.6e-06 RCC1-like domain
WD40_RLD PF25390 331 - 386 1.1e-08 RCC1-like domain
RCC1 PF00415 334 - 387 1.3e-11 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 79, 630
AciI CCGC 5 cut(s) 93, 123, 126, 440, 1169
AclWI GGATC 1 cut(s) 684
AcsI RAATTY 1 cut(s) 708
AfaI GTAC 1 cut(s) 794
AflIII ACRYGT 1 cut(s) 455
AgsI TTSAA 3 cut(s) 356, 722, 825
AjnI CCWGG 1 cut(s) 983
AluBI AGCT 8 cut(s) 31, 58, 196, 235, 481, 875, 1042, 1115
AluI AGCT 8 cut(s) 31, 58, 196, 235, 481, 875, 1042, 1115
Alw21I GWGCWC 1 cut(s) 832
Alw26I GTCTC 2 cut(s) 529, 1094
AlwI GGATC 1 cut(s) 684
Ama87I CYCGRG 2 cut(s) 292, 482
AoxI GGCC 1 cut(s) 386
ApeKI GCWGC 5 cut(s) 28, 767, 875, 1115, 1118
ApoI RAATTY 1 cut(s) 708
AspLEI GCGC 2 cut(s) 131, 573
AspS9I GGNCC 2 cut(s) 101, 386
AsuC2I CCSGG 1 cut(s) 646
AsuHPI GGTGA 4 cut(s) 244, 503, 623, 1040
AvaI CYCGRG 2 cut(s) 292, 482
AvaII GGWCC 1 cut(s) 101
BaeGI GKGCMC 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 689
Bbv12I GWGCWC 1 cut(s) 832
BbvI GCAGC 5 cut(s) 40, 779, 862, 1102, 1105
BccI CCATC 5 cut(s) 113, 458, 776, 879, 995
BceAI ACGGC 1 cut(s) 80
BciT130I CCWGG 1 cut(s) 985
BcnI CCSGG 1 cut(s) 646
BcoDI GTCTC 2 cut(s) 529, 1094
BfaI CTAG 2 cut(s) 365, 738
BfmI CTRYAG 1 cut(s) 47
BfoI RGCGCY 1 cut(s) 132
BisI GCNGC 7 cut(s) 29, 124, 127, 768, 876, 1116, 1119
BlsI GCNGC 7 cut(s) 30, 125, 128, 769, 877, 1117, 1120
Bme1390I CCNGG 2 cut(s) 646, 985
Bme18I GGWCC 1 cut(s) 101
BmeT110I CYCGRG 2 cut(s) 292, 482
BmgT120I GGNCC 2 cut(s) 101, 386
BmiI GGNNCC 4 cut(s) 102, 103, 287, 643
BmrFI CCNGG 2 cut(s) 646, 985
BmsI GCATC 3 cut(s) 427, 750, 1180
BpiI GAAGAC 1 cut(s) 689
BpmI CTGGAG 2 cut(s) 361, 963
BpuEI CTTGAG 1 cut(s) 1062
BpuMI CCSGG 1 cut(s) 646
BsaJI CCNNGG 6 cut(s) 65, 96, 421, 672, 946, 955
BsaXI ACNNNNNCTCC 2 cut(s) 612, 642
Bse3DI GCAATG 2 cut(s) 505, 744
BseBI CCWGG 1 cut(s) 985
BseDI CCNNGG 6 cut(s) 65, 96, 421, 672, 946, 955
BseGI GGATG 4 cut(s) 58, 226, 451, 890
BseMI GCAATG 2 cut(s) 505, 744
BseMII CTCAG 1 cut(s) 447
BseRI GAGGAG 2 cut(s) 104, 1065
BseSI GKGCMC 1 cut(s) 38
BseXI GCAGC 5 cut(s) 40, 779, 862, 1102, 1105
BseYI CCCAGC 2 cut(s) 31, 1023
BsgI GTGCAG 1 cut(s) 786
BshFI GGCC 1 cut(s) 388
BsiHKAI GWGCWC 1 cut(s) 832
BsiHKCI CYCGRG 2 cut(s) 292, 482
BsiSI CCGG 1 cut(s) 645
BslFI GGGAC 3 cut(s) 114, 317, 385
BsmAI GTCTC 2 cut(s) 529, 1094
BsmFI GGGAC 3 cut(s) 114, 317, 385
BsnI GGCC 1 cut(s) 388
BsoBI CYCGRG 2 cut(s) 292, 482
Bsp1286I GDGCHC 2 cut(s) 38, 832
Bsp1407I TGTACA 1 cut(s) 792
Bsp143I GATC 4 cut(s) 676, 681, 757, 1063
Bsp19I CCATGG 1 cut(s) 946
BspACI CCGC 5 cut(s) 93, 123, 126, 440, 1169
BspANI GGCC 1 cut(s) 388
BspCNI CTCAG 1 cut(s) 446
BspLI GGNNCC 4 cut(s) 102, 103, 287, 643
BspPI GGATC 1 cut(s) 684
BsrDI GCAATG 2 cut(s) 505, 744
BsrGI TGTACA 1 cut(s) 792
BssECI CCNNGG 6 cut(s) 65, 96, 421, 672, 946, 955
BssMI GATC 4 cut(s) 676, 681, 757, 1063
BssNAI GTATAC 1 cut(s) 631
BssT1I CCWWGG 4 cut(s) 421, 672, 946, 955
Bst1107I GTATAC 1 cut(s) 631
Bst2UI CCWGG 1 cut(s) 985
Bst4CI ACNGT 2 cut(s) 843, 1136
Bst6I CTCTTC 1 cut(s) 172
BstAPI GCANNNNNTGC 1 cut(s) 776
BstAUI TGTACA 1 cut(s) 792
BstC8I GCNNGC 4 cut(s) 44, 121, 270, 280
BstDEI CTNAG 3 cut(s) 433, 991, 1182
BstDSI CCRYGG 2 cut(s) 96, 946
BstEII GGTNACC 1 cut(s) 250
BstF5I GGATG 4 cut(s) 58, 226, 451, 890
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 2 cut(s) 131, 573
BstKTI GATC 4 cut(s) 679, 684, 760, 1066
BstMAI GTCTC 2 cut(s) 529, 1094
BstMBI GATC 4 cut(s) 676, 681, 757, 1063
BstMWI GCNNNNNNNGC 2 cut(s) 385, 776
BstNI CCWGG 1 cut(s) 985
BstNSI RCATGY 4 cut(s) 272, 459, 564, 1062
BstPI GGTNACC 1 cut(s) 250
BstSCI CCNGG 2 cut(s) 644, 983
BstSFI CTRYAG 1 cut(s) 47
BstSLI GKGCMC 1 cut(s) 38
BstV1I GCAGC 5 cut(s) 40, 779, 862, 1102, 1105
BstV2I GAAGAC 1 cut(s) 689
BstZ17I GTATAC 1 cut(s) 631
BsuRI GGCC 1 cut(s) 388
BtgI CCRYGG 2 cut(s) 96, 946
BtsCI GGATG 4 cut(s) 58, 226, 451, 890
Cac8I GCNNGC 4 cut(s) 44, 121, 270, 280
CfoI GCGC 2 cut(s) 131, 573
Cfr13I GGNCC 2 cut(s) 101, 386
Csp6I GTAC 1 cut(s) 793
CviQI GTAC 1 cut(s) 793
DdeI CTNAG 3 cut(s) 433, 991, 1182
DpnI GATC 4 cut(s) 678, 683, 759, 1065
DpnII GATC 4 cut(s) 676, 681, 757, 1063
Eam1104I CTCTTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 172
EciI GGCGGA 1 cut(s) 82
Eco130I CCWWGG 4 cut(s) 421, 672, 946, 955
Eco47I GGWCC 1 cut(s) 101
Eco88I CYCGRG 2 cut(s) 292, 482
Eco91I GGTNACC 1 cut(s) 250
EcoO109I RGGNCCY 1 cut(s) 101
EcoO65I GGTNACC 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 983
EcoT14I CCWWGG 4 cut(s) 421, 672, 946, 955
ErhI CCWWGG 4 cut(s) 421, 672, 946, 955
FaqI GGGAC 3 cut(s) 114, 317, 385
FauI CCCGC 1 cut(s) 433
FauNDI CATATG 1 cut(s) 789
FblI GTMKAC 2 cut(s) 79, 630
Fnu4HI GCNGC 7 cut(s) 29, 124, 127, 768, 876, 1116, 1119
FokI GGATG 4 cut(s) 65, 213, 458, 897
Fsp4HI GCNGC 7 cut(s) 29, 124, 127, 768, 876, 1116, 1119
FspBI CTAG 2 cut(s) 365, 738
GlaI GCGC 2 cut(s) 130, 572
GluI GCNGC 7 cut(s) 29, 124, 127, 768, 876, 1116, 1119
GsaI CCCAGC 2 cut(s) 35, 1027
GsuI CTGGAG 2 cut(s) 361, 963
HaeII RGCGCY 1 cut(s) 132
HaeIII GGCC 1 cut(s) 388
HapII CCGG 1 cut(s) 645
HhaI GCGC 2 cut(s) 131, 573
Hin6I GCGC 2 cut(s) 129, 571
HinP1I GCGC 2 cut(s) 129, 571
HincII GTYRAC 1 cut(s) 659
HindII GTYRAC 1 cut(s) 659
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 6 cut(s) 356, 614, 889, 951, 976, 1087
HpaII CCGG 1 cut(s) 645
HphI GGTGA 4 cut(s) 244, 503, 623, 1040
Hpy166II GTNNAC 8 cut(s) 80, 503, 631, 659, 795, 867, 1031, 1149
Hpy188I TCNGA 6 cut(s) 208, 436, 681, 1094, 1107, 1185
Hpy188III TCNNGA 6 cut(s) 316, 618, 701, 965, 1079, 1126
Hpy8I GTNNAC 8 cut(s) 80, 503, 631, 659, 795, 867, 1031, 1149
HpyAV CCTTC 5 cut(s) 93, 154, 362, 716, 1188
HpyCH4III ACNGT 2 cut(s) 843, 1136
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 7 cut(s) 379, 395, 510, 603, 749, 767, 1121
HpyF10VI GCNNNNNNNGC 2 cut(s) 385, 776
HpyF3I CTNAG 3 cut(s) 433, 991, 1182
HpySE526I ACGT 1 cut(s) 135
HspAI GCGC 2 cut(s) 129, 571
KflI GGGWCCC 1 cut(s) 101
Kzo9I GATC 4 cut(s) 676, 681, 757, 1063
LmnI GCTCC 1 cut(s) 647
Lsp1109I GCAGC 5 cut(s) 40, 779, 862, 1102, 1105
LweI GCATC 3 cut(s) 427, 750, 1180
MaeI CTAG 2 cut(s) 365, 738
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 2 cut(s) 250, 733
MalI GATC 4 cut(s) 678, 683, 759, 1065
MboI GATC 4 cut(s) 676, 681, 757, 1063
MboII GAAGA 3 cut(s) 189, 689, 1166
MhlI GDGCHC 2 cut(s) 38, 832
MluCI AATT 4 cut(s) 598, 690, 708, 1008
MlyI GAGTC 3 cut(s) 960, 970, 1096
MmeI TCCRAC 1 cut(s) 862
MnlI CCTC 4 cut(s) 75, 125, 173, 1086
MseI TTAA 4 cut(s) 146, 216, 905, 1011
MslI CAYNNNNRTG 1 cut(s) 859
MspA1I CMGCKG 1 cut(s) 31
MspI CCGG 1 cut(s) 645
MspR9I CCNGG 2 cut(s) 646, 985
MvaI CCWGG 1 cut(s) 985
MwoI GCNNNNNNNGC 2 cut(s) 385, 776
NciI CCSGG 1 cut(s) 646
NcoI CCATGG 1 cut(s) 946
NdeI CATATG 1 cut(s) 789
NdeII GATC 4 cut(s) 676, 681, 757, 1063
NlaIV GGNNCC 4 cut(s) 102, 103, 287, 643
NmuCI GTSAC 1 cut(s) 250
NspI RCATGY 4 cut(s) 272, 459, 564, 1062
PaeI GCATGC 1 cut(s) 272
PciI ACATGT 1 cut(s) 455
PcsI WCGNNNNNNNCGW 1 cut(s) 73
PfeI GAWTC 3 cut(s) 356, 614, 889
PfoI TCCNGGA 1 cut(s) 644
PkrI GCNGC 7 cut(s) 30, 125, 128, 769, 877, 1117, 1120
PleI GAGTC 3 cut(s) 959, 970, 1095
PpsI GAGTC 3 cut(s) 959, 970, 1095
PpuMI RGGWCCY 1 cut(s) 101
PscI ACATGT 1 cut(s) 455
Psp5II RGGWCCY 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 983
PspEI GGTNACC 1 cut(s) 250
PspFI CCCAGC 2 cut(s) 31, 1023
PspGI CCWGG 1 cut(s) 983
PspN4I GGNNCC 4 cut(s) 102, 103, 287, 643
PspPI GGNCC 2 cut(s) 101, 386
PspPPI RGGWCCY 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 31
RsaI GTAC 1 cut(s) 794
RsaNI GTAC 1 cut(s) 793
RseI CAYNNNNRTG 1 cut(s) 859
SaqAI TTAA 4 cut(s) 146, 216, 905, 1011
SatI GCNGC 7 cut(s) 29, 124, 127, 768, 876, 1116, 1119
Sau3AI GATC 4 cut(s) 676, 681, 757, 1063
Sau96I GGNCC 2 cut(s) 101, 386
SchI GAGTC 3 cut(s) 960, 970, 1096
ScrFI CCNGG 2 cut(s) 646, 985
SduI GDGCHC 2 cut(s) 38, 832
SfaNI GCATC 3 cut(s) 427, 750, 1180
SfcI CTRYAG 1 cut(s) 47
SinI GGWCC 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 859
SmlI CTYRAG 1 cut(s) 1077
SmoI CTYRAG 1 cut(s) 1077
SphI GCATGC 1 cut(s) 272
Sse9I AATT 4 cut(s) 598, 690, 708, 1008
SsiI CCGC 5 cut(s) 93, 123, 126, 440, 1169
SspMI CTAG 2 cut(s) 365, 738
StyD4I CCNGG 2 cut(s) 644, 983
StyI CCWWGG 4 cut(s) 421, 672, 946, 955
TaaI ACNGT 2 cut(s) 843, 1136
TaiI ACGT 1 cut(s) 138
TasI AATT 4 cut(s) 598, 690, 708, 1008
TatI WGTACW 1 cut(s) 792
TauI GCSGC 2 cut(s) 126, 129
TfiI GAWTC 3 cut(s) 356, 614, 889
Tru1I TTAA 4 cut(s) 146, 216, 905, 1011
Tru9I TTAA 4 cut(s) 146, 216, 905, 1011
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 5 cut(s) 28, 767, 875, 1115, 1118
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 3 cut(s) 250, 639, 916
TspGWI ACGGA 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 101
XapI RAATTY 1 cut(s) 708
XceI RCATGY 4 cut(s) 272, 459, 564, 1062
XcmI CCANNNNNNNNNTGG 1 cut(s) 953
XmiI GTMKAC 2 cut(s) 79, 630
XspI CTAG 2 cut(s) 365, 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.