Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006605

Physical Location & Seq

Genomic Coordinates Forward (+)

4464472 .. 4466019

Gene Structure 1548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g06880.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGAAAGAGAGTGAAGAAAGCAGAGTAGCAAAGCACGACGAAGAAGGAAGCAGCGAGCAACAGATATGGAGTTGGGGGGCAGGAACGGACGGGCAACTGGGCATGGGCAGGCTACAGGACGAGCACCTCCCTCAGCTGCTTCGCCTCCCTTCTCTCTCCCCCGCCGCCGGATCCATCTGCTCCCTCGCCTGCGGCGGCGCTCACGTTCTCGCCTTAACCTCAGGTGGGAAGGTGCTGACATGGGGAAGGGGCACGTCTGGTCAACTGGGTCATACTGATACGGTCAACAGTCCAAATCCTAAGTTTGTAATGTCTTTGAACAACCTCTTCATTACTCATGTTTCTGCTGGTTGGAACCACTCCGGTTTTGTTTCAGATGCAGGGGATCTTTTCACGTGCGGAGATGGCTCGTTTGGCCAGCTCGGGCATGGTGATTTCCAGTCGCATTGCTATCCTGTCAAAGTCTCCTTCTTTGTTGATAAGAACGTGGAGCAGATAGCATGCGGGATGCGCCATTCGCTTGTTTTGGTGAAAGGTGTTTCAGGGGATGAAGTTTATGGGTTTGGTTCGGGGAAGCGTGGTCAACTGGGTATCTCTGAGGATAAGATCAAATTAGTTAATATTCCTGAACAAATTCATGGATTTGACAGCGTAAAAATCTCTAGCATTGCTGCAAATGGATCGATCAAAGTGCAGCGTTATCTGCTGATGGGCATTTGTACACTTGGGGAAGAGGGTTCGGTGACATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

RCC1 RRM_1

Protein Analysis

251

Amino Acids

26.48

Weight (kDa)

5.9

Isoelectric Point (pI)

37.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27060
fragaria_vesca	FvH4_4g32090 FvH4_4g32090 FvH4_4g32090 FvH4_4g32090 FvH4_4g32090 FvH4_4g32090 FvH4_4g32090
malus_domestica	MD16G1079700.v1.1
prunus_persica	Prupe.1G267000_v2.0.a1
pyrus_communis	pycom01g03630 pycom16g06880
rosa_chinensis	RchiOBHm_Chr4g0440781
rosa_laevigata	RLG00000006154
rosa_multiflora	Rmu_sc0000424.1_g000006 Rmu_sc0000780.1_g000020 Rmu_sc0022158.1_g000002
rosa_roxburghii	Rroxscaffold_5G00381540
rosa_rugosa	Rorug04G0327800 Rorug04G0327800 Rorug04G0327900
rosa_samantha	Rh4AG379700 Rh4BG392600 Rh4CG407400 Rh4DG386400
rosa_wichuraiana	Rw4G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	162, 165, 192, 195, 399, 504
AclWI	GGATC	4 cut(s)	165, 178, 393, 688
AcoI	YGGCCR	1 cut(s)	415
AcsI	RAATTY	1 cut(s)	633
AcvI	CACGTG	1 cut(s)	396
AfaI	GTAC	1 cut(s)	721
AfiI	CCNNNNNNNGG	2 cut(s)	167, 225
AgsI	TTSAA	1 cut(s)	319
AjiI	CACGTC	1 cut(s)	255
AluBI	AGCT	2 cut(s)	136, 421
AluI	AGCT	2 cut(s)	136, 421
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	1 cut(s)	469
AlwI	GGATC	4 cut(s)	165, 178, 393, 688
Ama87I	CYCGRG	1 cut(s)	422
AoxI	GGCC	1 cut(s)	415
ApeKI	GCWGC	4 cut(s)	51, 136, 671, 694
ApoI	RAATTY	1 cut(s)	633
Asp700I	GAANNNNTTC	1 cut(s)	633
AspLEI	GCGC	2 cut(s)	200, 513
AsuHPI	GGTGA	2 cut(s)	443, 541
AvaI	CYCGRG	1 cut(s)	422
AxyI	CCTNAGG	1 cut(s)	220
BaeGI	GKGCMC	1 cut(s)	254
BalI	TGGCCA	1 cut(s)	417
BamHI	GGATCC	1 cut(s)	170
BbrPI	CACGTG	1 cut(s)	396
Bbv12I	GWGCWC	1 cut(s)	126
BbvCI	CCTCAGC	1 cut(s)	132
BbvI	GCAGC	4 cut(s)	63, 123, 658, 706
BccI	CCATC	3 cut(s)	182, 398, 703
BcgI	CGANNNNNNTGC	4 cut(s)	663, 673, 697, 707
BcoDI	GTCTC	1 cut(s)	469
BfaI	CTAG	1 cut(s)	663
BfmI	CTRYAG	1 cut(s)	113
BfoI	RGCGCY	1 cut(s)	201
BisI	GCNGC	7 cut(s)	52, 137, 165, 193, 196, 672, 695
BlsI	GCNGC	7 cut(s)	53, 138, 166, 194, 197, 673, 696
BmeT110I	CYCGRG	1 cut(s)	422
BmgBI	CACGTC	1 cut(s)	255
BmiI	GGNNCC	2 cut(s)	172, 356
BmrI	ACTGGG	3 cut(s)	107, 275, 596
BmsI	GCATC	2 cut(s)	367, 498
BmuI	ACTGGG	3 cut(s)	107, 275, 596
Bpu10I	CCTNAGC	1 cut(s)	132
Bsa29I	ATCGAT	1 cut(s)	683
BsaAI	YACGTR	1 cut(s)	396
BsaWI	WCCGGW	1 cut(s)	362
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 225
Bse1I	ACTGG	4 cut(s)	102, 270, 439, 591
Bse21I	CCTNAGG	1 cut(s)	220
Bse3DI	GCAATG	2 cut(s)	445, 666
BseCI	ATCGAT	1 cut(s)	683
BseGI	GGATG	2 cut(s)	513, 553
BseLI	CCNNNNNNNGG	2 cut(s)	167, 225
BseMI	GCAATG	2 cut(s)	445, 666
BseMII	CTCAG	3 cut(s)	146, 234, 588
BseNI	ACTGG	4 cut(s)	102, 270, 439, 591
BseSI	GKGCMC	1 cut(s)	254
BseXI	GCAGC	4 cut(s)	63, 123, 658, 706
BsgI	GTGCAG	1 cut(s)	713
BshFI	GGCC	1 cut(s)	417
BshVI	ATCGAT	1 cut(s)	683
BsiHKAI	GWGCWC	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	422
BsiSI	CCGG	2 cut(s)	168, 363
BslI	CCNNNNNNNGG	2 cut(s)	167, 225
BsmAI	GTCTC	1 cut(s)	469
BsnI	GGCC	1 cut(s)	417
BsoBI	CYCGRG	1 cut(s)	422
Bsp1286I	GDGCHC	2 cut(s)	126, 254
Bsp1407I	TGTACA	1 cut(s)	719
Bsp143I	GATC	5 cut(s)	170, 385, 606, 680, 684
BspACI	CCGC	6 cut(s)	162, 165, 192, 195, 399, 504
BspANI	GGCC	1 cut(s)	417
BspCNI	CTCAG	3 cut(s)	145, 233, 589
BspDI	ATCGAT	1 cut(s)	683
BspLI	GGNNCC	2 cut(s)	172, 356
BspPI	GGATC	4 cut(s)	165, 178, 393, 688
BsrDI	GCAATG	2 cut(s)	445, 666
BsrGI	TGTACA	1 cut(s)	719
BsrI	ACTGG	4 cut(s)	102, 270, 439, 591
BssMI	GATC	5 cut(s)	170, 385, 606, 680, 684
Bst4CI	ACNGT	2 cut(s)	283, 290
Bst6I	CTCTTC	2 cut(s)	332, 726
BstAUI	TGTACA	1 cut(s)	719
BstBAI	YACGTR	1 cut(s)	396
BstC8I	GCNNGC	5 cut(s)	56, 110, 190, 419, 502
BstDEI	CTNAG	4 cut(s)	132, 220, 300, 597
BstF5I	GGATG	2 cut(s)	513, 553
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	2 cut(s)	200, 513
BstKTI	GATC	5 cut(s)	173, 388, 609, 683, 687
BstMAI	GTCTC	1 cut(s)	469
BstMBI	GATC	5 cut(s)	170, 385, 606, 680, 684
BstMWI	GCNNNNNNNGC	5 cut(s)	405, 414, 510, 517, 703
BstNSI	RCATGY	1 cut(s)	504
BstSFI	CTRYAG	1 cut(s)	113
BstSLI	GKGCMC	1 cut(s)	254
BstV1I	GCAGC	4 cut(s)	63, 123, 658, 706
BstX2I	RGATCY	2 cut(s)	170, 385
BstYI	RGATCY	2 cut(s)	170, 385
Bsu15I	ATCGAT	1 cut(s)	683
Bsu36I	CCTNAGG	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	417
BsuTUI	ATCGAT	1 cut(s)	683
BtrI	CACGTC	1 cut(s)	255
BtsCI	GGATG	2 cut(s)	513, 553
Cac8I	GCNNGC	5 cut(s)	56, 110, 190, 419, 502
CfoI	GCGC	2 cut(s)	200, 513
ClaI	ATCGAT	1 cut(s)	683
Csp6I	GTAC	1 cut(s)	720
CviAII	CATG	6 cut(s)	103, 240, 338, 428, 501, 638
CviJI	RGCY	5 cut(s)	112, 136, 408, 417, 421
CviKI_1	RGCY	5 cut(s)	112, 136, 408, 417, 421
CviQI	GTAC	1 cut(s)	720
DdeI	CTNAG	4 cut(s)	132, 220, 300, 597
DpnI	GATC	5 cut(s)	172, 387, 608, 682, 686
DpnII	GATC	5 cut(s)	170, 385, 606, 680, 684
EaeI	YGGCCR	1 cut(s)	415
Eam1104I	CTCTTC	2 cut(s)	332, 726
EarI	CTCTTC	2 cut(s)	332, 726
Eco72I	CACGTG	1 cut(s)	396
Eco81I	CCTNAGG	1 cut(s)	220
Eco88I	CYCGRG	1 cut(s)	422
FaeI	CATG	6 cut(s)	106, 243, 341, 431, 504, 641
FaiI	YATR	9 cut(s)	67, 104, 241, 273, 339, 429, 502, 558, 639
FatI	CATG	6 cut(s)	102, 239, 337, 427, 500, 637
FauI	CCCGC	2 cut(s)	169, 497
Fnu4HI	GCNGC	7 cut(s)	52, 137, 165, 193, 196, 672, 695
FokI	GGATG	2 cut(s)	520, 560
Fsp4HI	GCNGC	7 cut(s)	52, 137, 165, 193, 196, 672, 695
FspBI	CTAG	1 cut(s)	663
GlaI	GCGC	2 cut(s)	199, 512
GluI	GCNGC	7 cut(s)	52, 137, 165, 193, 196, 672, 695
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	417
HapII	CCGG	2 cut(s)	168, 363
HhaI	GCGC	2 cut(s)	200, 513
Hin1II	CATG	6 cut(s)	106, 243, 341, 431, 504, 641
Hin6I	GCGC	2 cut(s)	198, 511
HinP1I	GCGC	2 cut(s)	198, 511
HincII	GTYRAC	3 cut(s)	263, 286, 584
HindII	GTYRAC	3 cut(s)	263, 286, 584
HpaII	CCGG	2 cut(s)	168, 363
HphI	GGTGA	2 cut(s)	443, 541
Hpy166II	GTNNAC	4 cut(s)	263, 286, 584, 722
Hpy188I	TCNGA	2 cut(s)	376, 598
Hpy188III	TCNNGA	1 cut(s)	626
Hpy8I	GTNNAC	4 cut(s)	263, 286, 584, 722
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	5 cut(s)	38, 159, 223, 240, 478
HpyCH4III	ACNGT	2 cut(s)	283, 290
HpyCH4IV	ACGT	4 cut(s)	204, 254, 395, 486
HpyCH4V	TGCA	3 cut(s)	380, 674, 694
HpyF10VI	GCNNNNNNNGC	5 cut(s)	405, 414, 510, 517, 703
HpyF3I	CTNAG	4 cut(s)	132, 220, 300, 597
HpySE526I	ACGT	4 cut(s)	204, 254, 395, 486
Hsp92II	CATG	6 cut(s)	106, 243, 341, 431, 504, 641
HspAI	GCGC	2 cut(s)	198, 511
Kzo9I	GATC	5 cut(s)	170, 385, 606, 680, 684
LmnI	GCTCC	2 cut(s)	185, 490
Lsp1109I	GCAGC	4 cut(s)	63, 123, 658, 706
LweI	GCATC	2 cut(s)	367, 498
MaeI	CTAG	1 cut(s)	663
MaeII	ACGT	4 cut(s)	204, 254, 395, 486
MaeIII	GTNAC	1 cut(s)	742
MalI	GATC	5 cut(s)	172, 387, 608, 682, 686
MboI	GATC	5 cut(s)	170, 385, 606, 680, 684
MboII	GAAGA	4 cut(s)	26, 53, 319, 743
MflI	RGATCY	2 cut(s)	170, 385
MhlI	GDGCHC	2 cut(s)	126, 254
MlsI	TGGCCA	1 cut(s)	417
MluCI	AATT	2 cut(s)	611, 633
MluNI	TGGCCA	1 cut(s)	417
MmeI	TCCRAC	1 cut(s)	332
MnlI	CCTC	8 cut(s)	137, 141, 155, 194, 229, 335, 592, 727
Mox20I	TGGCCA	1 cut(s)	417
MroXI	GAANNNNTTC	1 cut(s)	633
MscI	TGGCCA	1 cut(s)	417
MseI	TTAA	3 cut(s)	215, 618, 751
Msp20I	TGGCCA	1 cut(s)	417
MspA1I	CMGCKG	1 cut(s)	136
MspI	CCGG	2 cut(s)	168, 363
MwoI	GCNNNNNNNGC	5 cut(s)	405, 414, 510, 517, 703
NdeII	GATC	5 cut(s)	170, 385, 606, 680, 684
NlaIII	CATG	6 cut(s)	106, 243, 341, 431, 504, 641
NlaIV	GGNNCC	2 cut(s)	172, 356
NmuCI	GTSAC	1 cut(s)	742
NspI	RCATGY	1 cut(s)	504
PaeI	GCATGC	1 cut(s)	504
PdmI	GAANNNNTTC	1 cut(s)	633
PkrI	GCNGC	7 cut(s)	53, 138, 166, 194, 197, 673, 696
PmaCI	CACGTG	1 cut(s)	396
PmlI	CACGTG	1 cut(s)	396
Ppu21I	YACGTR	1 cut(s)	396
PspCI	CACGTG	1 cut(s)	396
PspN4I	GGNNCC	2 cut(s)	172, 356
PsuI	RGATCY	2 cut(s)	170, 385
PvuII	CAGCTG	1 cut(s)	136
RsaI	GTAC	1 cut(s)	721
RsaNI	GTAC	1 cut(s)	720
SaqAI	TTAA	3 cut(s)	215, 618, 751
SatI	GCNGC	7 cut(s)	52, 137, 165, 193, 196, 672, 695
Sau3AI	GATC	5 cut(s)	170, 385, 606, 680, 684
SduI	GDGCHC	2 cut(s)	126, 254
SfaNI	GCATC	2 cut(s)	367, 498
SfcI	CTRYAG	1 cut(s)	113
SphI	GCATGC	1 cut(s)	504
Sse9I	AATT	2 cut(s)	611, 633
SsiI	CCGC	6 cut(s)	162, 165, 192, 195, 399, 504
SspI	AATATT	1 cut(s)	622
SspMI	CTAG	1 cut(s)	663
TaaI	ACNGT	2 cut(s)	283, 290
TaiI	ACGT	4 cut(s)	207, 257, 398, 489
TaqI	TCGA	1 cut(s)	683
TasI	AATT	2 cut(s)	611, 633
TatI	WGTACW	1 cut(s)	719
TauI	GCSGC	3 cut(s)	167, 195, 198
Tru1I	TTAA	3 cut(s)	215, 618, 751
Tru9I	TTAA	3 cut(s)	215, 618, 751
TseFI	GTSAC	1 cut(s)	742
TseI	GCWGC	4 cut(s)	51, 136, 671, 694
Tsp45I	GTSAC	1 cut(s)	742
TspDTI	ATGAA	4 cut(s)	17, 319, 564, 626
TspGWI	ACGGA	1 cut(s)	101
XapI	RAATTY	1 cut(s)	633
XceI	RCATGY	1 cut(s)	504
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425
XmnI	GAANNNNTTC	1 cut(s)	633
XspI	CTAG	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.