Rw4G032690

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0006605
Physical Location & Seq
Forward (+)
59780992 .. 59783862
2871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G032690.1

Sequence Viewer

Length: 1110 bp
ATGGAAGAGAATGAAGAAGGCAGGGTAAAAAACGAAGAAGAAGAAGAAGAGCAACAAGTATGGAGTTGGGGGGCAGGAACGGACGGGCAGCTGGGCACGGGCAGGCTACAAGATGAGCTCCTCCCTCAGTTGCTTCGTCTACCTTCTCTCTCCGCCGTGGGATCCATCTCTCTCCTCGCCTGCGGCGGCGCTCACGTTCTCGCCTTAACATCAGGTGGGAAGGTGCTGACATGGGGAAGAGGCACATCTGGTCAGCTTGGTCATTCTGATAGGGTTAATAGCCCACATCCCAAGCTTGTAATGTCTTTGGACACCTACTTCATTACGCATGCTTCTGCTGGCTGGAACCACTCGGGTTTCGTTTCAGATGCGGGGGATGTTTTCACATGTGGAGATGGCTCATTTGGTCAGCTCGGGCATGGTGATTATAGTTTACATTGCAGTCCTGTCAAAGTCTCTTTCTTTGATGACCATTGTGTTGAGCAGATAGCATGTGGTATGCGCCATTCTCTTGTTTTGCTGAAAGGTGATTCAGGAGATGAAGTATACGGGTTTGGCTCCGGGAAGCGTGGTCAACTTGGTATCTCCAAGGATAAGATCAAGTCAATTAGTCTTCCTGAACGAATTTATGGACTTGAAGGTGTAAAAGTTACTAGCATCATTCCAAATGGAGATCAAAGTGCAGCATTATCTGCTGATGGGCGTATGTACACTTGGGGAAAAGGGTTTGGTGGCACTTCAAGTGCTCACTCCCCACAGTCTTTACCTACATCGGTATGGTTTACCAAAGCTGCTGTTGGATGGAATCATGCTTTATTATTAACTGCTGGTGGAGAAGTTTTCATGCTCGGTGGAAATCACCATGGAGTCCTTGGTAATCCTGACAAAATGACTCCAGCCAGGCTCTTAGCAGATTCAGGAGAAGCTATCCTGGATAAAGTCCCTGGTCTCGAAGAGAATAGGATCATGGACATTGCAGCCGGGGCTGAGCACTCTGTTATTGTCACAGGCACTAATACGTTATCTCTATTACTATCTTTTGTAATTGATACTCGGATGGTGTCTTATTCCTTTCTCCCCTTCTTTGTGTGTCATTGTGATGGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
RCC1 RRM_1

Protein Analysis

369

Amino Acids

39.2

Weight (kDa)

5.47

Isoelectric Point (pI)

30.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 19 - 340 4.8e-65 RCC1-like domain
RCC1 PF00415 19 - 69 1e-10 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 58 - 85 1.1e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 73 - 120 2.3e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 125 - 173 1.9e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 181 - 220 9e-06 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 139, 546
AciI CCGC 4 cut(s) 153, 183, 186, 371
AclWI GGATC 3 cut(s) 156, 169, 971
AcsI RAATTY 1 cut(s) 624
AfaI GTAC 1 cut(s) 710
AflIII ACRYGT 1 cut(s) 386
AgsI TTSAA 2 cut(s) 638, 741
AjnI CCWGG 3 cut(s) 899, 930, 943
AluBI AGCT 7 cut(s) 91, 118, 256, 295, 412, 791, 926
AluI AGCT 7 cut(s) 91, 118, 256, 295, 412, 791, 926
Alw21I GWGCWC 3 cut(s) 120, 748, 993
Alw26I GTCTC 2 cut(s) 460, 953
AlwI GGATC 3 cut(s) 156, 169, 971
Ama87I CYCGRG 2 cut(s) 352, 413
ApeKI GCWGC 4 cut(s) 88, 683, 791, 977
ApoI RAATTY 1 cut(s) 624
AspLEI GCGC 2 cut(s) 191, 504
AsuC2I CCSGG 2 cut(s) 562, 982
AsuHPI GGTGA 3 cut(s) 434, 539, 851
AvaI CYCGRG 2 cut(s) 352, 413
BaeGI GKGCMC 1 cut(s) 98
BamHI GGATCC 1 cut(s) 161
BanII GRGCYC 1 cut(s) 120
BbsI GAAGAC 1 cut(s) 605
Bbv12I GWGCWC 3 cut(s) 120, 748, 993
BbvI GCAGC 4 cut(s) 100, 695, 778, 989
BccI CCATC 6 cut(s) 173, 389, 692, 795, 1051, 1094
BceAI ACGGC 1 cut(s) 140
BciT130I CCWGG 3 cut(s) 901, 932, 945
BcnI CCSGG 2 cut(s) 562, 982
BcoDI GTCTC 2 cut(s) 460, 953
BfaI CTAG 1 cut(s) 654
BfoI RGCGCY 1 cut(s) 192
BisI GCNGC 6 cut(s) 89, 184, 187, 684, 792, 978
BlpI GCTNAGC 1 cut(s) 987
BlsI GCNGC 6 cut(s) 90, 185, 188, 685, 793, 979
Bme1390I CCNGG 5 cut(s) 562, 901, 932, 945, 982
BmeT110I CYCGRG 2 cut(s) 352, 413
BmiI GGNNCC 3 cut(s) 163, 347, 559
BmrFI CCNGG 5 cut(s) 562, 901, 932, 945, 982
BmsI GCATC 2 cut(s) 358, 666
BpiI GAAGAC 1 cut(s) 605
BpmI CTGGAG 1 cut(s) 879
Bpu1102I GCTNAGC 1 cut(s) 987
BpuMI CCSGG 2 cut(s) 562, 982
BsaI GGTCTC 1 cut(s) 953
BsaJI CCNNGG 6 cut(s) 156, 588, 862, 871, 943, 981
BsaXI ACNNNNNCTCC 2 cut(s) 528, 558
Bse3DI GCAATG 2 cut(s) 436, 972
BseBI CCWGG 3 cut(s) 901, 932, 945
BseDI CCNNGG 6 cut(s) 156, 588, 862, 871, 943, 981
BseGI GGATG 4 cut(s) 286, 382, 806, 1062
BseMI GCAATG 2 cut(s) 436, 972
BseMII CTCAG 2 cut(s) 140, 978
BseRI GAGGAG 2 cut(s) 110, 164
BseSI GKGCMC 1 cut(s) 98
BseXI GCAGC 4 cut(s) 100, 695, 778, 989
BseYI CCCAGC 1 cut(s) 91
BsgI GTGCAG 1 cut(s) 702
BsiHKAI GWGCWC 3 cut(s) 120, 748, 993
BsiHKCI CYCGRG 2 cut(s) 352, 413
BsiSI CCGG 2 cut(s) 561, 981
BslFI GGGAC 1 cut(s) 926
BsmAI GTCTC 2 cut(s) 460, 953
BsmFI GGGAC 1 cut(s) 926
Bso31I GGTCTC 1 cut(s) 953
BsoBI CYCGRG 2 cut(s) 352, 413
Bsp1286I GDGCHC 4 cut(s) 98, 120, 748, 993
Bsp1407I TGTACA 1 cut(s) 708
Bsp143I GATC 4 cut(s) 161, 597, 673, 963
Bsp1720I GCTNAGC 1 cut(s) 987
Bsp19I CCATGG 1 cut(s) 862
BspACI CCGC 4 cut(s) 153, 183, 186, 371
BspCNI CTCAG 2 cut(s) 139, 979
BspLI GGNNCC 3 cut(s) 163, 347, 559
BspPI GGATC 3 cut(s) 156, 169, 971
BspQI GCTCTTC 1 cut(s) 42
BspTNI GGTCTC 1 cut(s) 953
BsrDI GCAATG 2 cut(s) 436, 972
BsrGI TGTACA 1 cut(s) 708
BssECI CCNNGG 6 cut(s) 156, 588, 862, 871, 943, 981
BssMI GATC 4 cut(s) 161, 597, 673, 963
BssNAI GTATAC 1 cut(s) 547
BssT1I CCWWGG 3 cut(s) 588, 862, 871
Bst1107I GTATAC 1 cut(s) 547
Bst2UI CCWGG 3 cut(s) 901, 932, 945
Bst4CI ACNGT 1 cut(s) 759
Bst6I CTCTTC 3 cut(s) 42, 232, 948
BstAPI GCANNNNNTGC 1 cut(s) 692
BstAUI TGTACA 1 cut(s) 708
BstC8I GCNNGC 4 cut(s) 104, 181, 330, 340
BstDEI CTNAG 3 cut(s) 126, 907, 987
BstDSI CCRYGG 2 cut(s) 156, 862
BstF5I GGATG 4 cut(s) 286, 382, 806, 1062
BstH2I RGCGCY 1 cut(s) 192
BstHHI GCGC 2 cut(s) 191, 504
BstKTI GATC 4 cut(s) 164, 600, 676, 966
BstMAI GTCTC 2 cut(s) 460, 953
BstMBI GATC 4 cut(s) 161, 597, 673, 963
BstMWI GCNNNNNNNGC 2 cut(s) 692, 983
BstNI CCWGG 3 cut(s) 901, 932, 945
BstNSI RCATGY 3 cut(s) 332, 390, 495
BstSCI CCNGG 5 cut(s) 560, 899, 930, 943, 980
BstSLI GKGCMC 1 cut(s) 98
BstV1I GCAGC 4 cut(s) 100, 695, 778, 989
BstV2I GAAGAC 1 cut(s) 605
BstX2I RGATCY 1 cut(s) 161
BstYI RGATCY 1 cut(s) 161
BstZ17I GTATAC 1 cut(s) 547
BtgI CCRYGG 2 cut(s) 156, 862
BtsCI GGATG 4 cut(s) 286, 382, 806, 1062
Cac8I GCNNGC 4 cut(s) 104, 181, 330, 340
CfoI GCGC 2 cut(s) 191, 504
Csp6I GTAC 1 cut(s) 709
CviAII CATG 9 cut(s) 231, 329, 387, 419, 492, 809, 844, 863, 967
CviQI GTAC 1 cut(s) 709
DdeI CTNAG 3 cut(s) 126, 907, 987
DpnI GATC 4 cut(s) 163, 599, 675, 965
DpnII GATC 4 cut(s) 161, 597, 673, 963
Eam1104I CTCTTC 3 cut(s) 42, 232, 948
EarI CTCTTC 3 cut(s) 42, 232, 948
EciI GGCGGA 1 cut(s) 142
Ecl136II GAGCTC 1 cut(s) 118
Eco130I CCWWGG 3 cut(s) 588, 862, 871
Eco24I GRGCYC 1 cut(s) 120
Eco31I GGTCTC 1 cut(s) 953
Eco53kI GAGCTC 1 cut(s) 118
Eco88I CYCGRG 2 cut(s) 352, 413
EcoICRI GAGCTC 1 cut(s) 118
EcoRII CCWGG 3 cut(s) 899, 930, 943
EcoT14I CCWWGG 3 cut(s) 588, 862, 871
EcoT38I GRGCYC 1 cut(s) 120
ErhI CCWWGG 3 cut(s) 588, 862, 871
FaeI CATG 9 cut(s) 234, 332, 390, 422, 495, 812, 847, 866, 970
FaqI GGGAC 1 cut(s) 926
FatI CATG 9 cut(s) 230, 328, 386, 418, 491, 808, 843, 862, 966
FauI CCCGC 1 cut(s) 364
FblI GTMKAC 2 cut(s) 139, 546
Fnu4HI GCNGC 6 cut(s) 89, 184, 187, 684, 792, 978
FokI GGATG 4 cut(s) 273, 389, 813, 1069
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 6 cut(s) 89, 184, 187, 684, 792, 978
FspBI CTAG 1 cut(s) 654
GlaI GCGC 2 cut(s) 190, 503
GluI GCNGC 6 cut(s) 89, 184, 187, 684, 792, 978
GsaI CCCAGC 1 cut(s) 95
GsuI CTGGAG 1 cut(s) 879
HaeII RGCGCY 1 cut(s) 192
HapII CCGG 2 cut(s) 561, 981
HhaI GCGC 2 cut(s) 191, 504
Hin1II CATG 9 cut(s) 234, 332, 390, 422, 495, 812, 847, 866, 970
Hin6I GCGC 2 cut(s) 189, 502
HinP1I GCGC 2 cut(s) 189, 502
HincII GTYRAC 1 cut(s) 575
HindII GTYRAC 1 cut(s) 575
HindIII AAGCTT 1 cut(s) 293
HinfI GANTC 5 cut(s) 530, 805, 867, 892, 914
HpaII CCGG 2 cut(s) 561, 981
HphI GGTGA 3 cut(s) 434, 539, 851
Hpy166II GTNNAC 6 cut(s) 140, 434, 547, 575, 711, 783
Hpy188I TCNGA 3 cut(s) 268, 367, 1056
Hpy188III TCNNGA 5 cut(s) 534, 617, 881, 918, 950
Hpy8I GTNNAC 6 cut(s) 140, 434, 547, 575, 711, 783
HpyAV CCTTC 5 cut(s) 11, 153, 214, 632, 1090
HpyCH4III ACNGT 1 cut(s) 759
HpyCH4IV ACGT 2 cut(s) 195, 1019
HpyCH4V TGCA 3 cut(s) 441, 683, 977
HpyF10VI GCNNNNNNNGC 2 cut(s) 692, 983
HpyF3I CTNAG 3 cut(s) 126, 907, 987
HpySE526I ACGT 2 cut(s) 195, 1019
Hsp92II CATG 9 cut(s) 234, 332, 390, 422, 495, 812, 847, 866, 970
HspAI GCGC 2 cut(s) 189, 502
Kzo9I GATC 4 cut(s) 161, 597, 673, 963
LguI GCTCTTC 1 cut(s) 42
LmnI GCTCC 2 cut(s) 123, 563
Lsp1109I GCAGC 4 cut(s) 100, 695, 778, 989
LweI GCATC 2 cut(s) 358, 666
MaeI CTAG 1 cut(s) 654
MaeII ACGT 2 cut(s) 195, 1019
MaeIII GTNAC 2 cut(s) 649, 1003
MalI GATC 4 cut(s) 163, 599, 675, 965
MboI GATC 4 cut(s) 161, 597, 673, 963
MflI RGATCY 1 cut(s) 161
MhlI GDGCHC 4 cut(s) 98, 120, 748, 993
MluCI AATT 3 cut(s) 606, 624, 1044
MlyI GAGTC 2 cut(s) 876, 886
MmeI TCCRAC 1 cut(s) 778
MnlI CCTC 4 cut(s) 131, 135, 185, 233
MseI TTAA 3 cut(s) 206, 276, 821
MslI CAYNNNNRTG 2 cut(s) 775, 1098
MspA1I CMGCKG 1 cut(s) 91
MspI CCGG 2 cut(s) 561, 981
MspR9I CCNGG 5 cut(s) 562, 901, 932, 945, 982
MvaI CCWGG 3 cut(s) 901, 932, 945
MwoI GCNNNNNNNGC 2 cut(s) 692, 983
NciI CCSGG 2 cut(s) 562, 982
NcoI CCATGG 1 cut(s) 862
NdeII GATC 4 cut(s) 161, 597, 673, 963
NlaIII CATG 9 cut(s) 234, 332, 390, 422, 495, 812, 847, 866, 970
NlaIV GGNNCC 3 cut(s) 163, 347, 559
NmuCI GTSAC 1 cut(s) 1003
NspI RCATGY 3 cut(s) 332, 390, 495
PaeI GCATGC 1 cut(s) 332
PciI ACATGT 1 cut(s) 386
PciSI GCTCTTC 1 cut(s) 42
PfeI GAWTC 3 cut(s) 530, 805, 914
PfoI TCCNGGA 2 cut(s) 560, 930
PkrI GCNGC 6 cut(s) 90, 185, 188, 685, 793, 979
PleI GAGTC 2 cut(s) 875, 886
PpsI GAGTC 2 cut(s) 875, 886
PscI ACATGT 1 cut(s) 386
Psp124BI GAGCTC 1 cut(s) 120
Psp6I CCWGG 3 cut(s) 899, 930, 943
PspFI CCCAGC 1 cut(s) 91
PspGI CCWGG 3 cut(s) 899, 930, 943
PspN4I GGNNCC 3 cut(s) 163, 347, 559
PsuI RGATCY 1 cut(s) 161
PvuII CAGCTG 1 cut(s) 91
RsaI GTAC 1 cut(s) 710
RsaNI GTAC 1 cut(s) 709
RseI CAYNNNNRTG 2 cut(s) 775, 1098
SacI GAGCTC 1 cut(s) 120
SapI GCTCTTC 1 cut(s) 42
SaqAI TTAA 3 cut(s) 206, 276, 821
SatI GCNGC 6 cut(s) 89, 184, 187, 684, 792, 978
Sau3AI GATC 4 cut(s) 161, 597, 673, 963
SchI GAGTC 2 cut(s) 876, 886
ScrFI CCNGG 5 cut(s) 562, 901, 932, 945, 982
SduI GDGCHC 4 cut(s) 98, 120, 748, 993
SfaNI GCATC 2 cut(s) 358, 666
SmiMI CAYNNNNRTG 2 cut(s) 775, 1098
SphI GCATGC 1 cut(s) 332
Sse9I AATT 3 cut(s) 606, 624, 1044
SsiI CCGC 4 cut(s) 153, 183, 186, 371
SspMI CTAG 1 cut(s) 654
SstI GAGCTC 1 cut(s) 120
StyD4I CCNGG 5 cut(s) 560, 899, 930, 943, 980
StyI CCWWGG 3 cut(s) 588, 862, 871
TaaI ACNGT 1 cut(s) 759
TaiI ACGT 2 cut(s) 198, 1022
TaqI TCGA 1 cut(s) 951
TasI AATT 3 cut(s) 606, 624, 1044
TatI WGTACW 1 cut(s) 708
TauI GCSGC 2 cut(s) 186, 189
TfiI GAWTC 3 cut(s) 530, 805, 914
Tru1I TTAA 3 cut(s) 206, 276, 821
Tru9I TTAA 3 cut(s) 206, 276, 821
TseFI GTSAC 1 cut(s) 1003
TseI GCWGC 4 cut(s) 88, 683, 791, 977
Tsp45I GTSAC 1 cut(s) 1003
TspDTI ATGAA 4 cut(s) 27, 310, 555, 832
TspGWI ACGGA 1 cut(s) 95
XapI RAATTY 1 cut(s) 624
XceI RCATGY 3 cut(s) 332, 390, 495
XcmI CCANNNNNNNNNTGG 1 cut(s) 869
XmiI GTMKAC 2 cut(s) 139, 546
XspI CTAG 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.