Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022158.1

Orthogroup ID

OG0006605

Physical Location & Seq

Genomic Coordinates Reverse (-)

2587 .. 5638

Gene Structure 3052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022158.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

atgataacatcaaatggaaacctcctgattctagtttcatcaagctcaatttcgacggttcaatccttcaaaacaagtcggcagcggcaggttttgtataaggatagtggtggcaatccaatcttcgcctcctccaagactattggtcattccgccgttttggtagttgaagctttagcctttcgtgaaggccttcgccaagcaattaccaaagtttaccatcaaattcaaatacgaggagatgcgggggatgttttcacatgtggagatggctcatttggtcagctcgggcatggtgattatagtttacattgcagtcctgtcaaagtctctttctttgatgaccattgtgttgagcagatagcatgtggtatgcgccattctcttgttttgctgaaaggtgattcaggagatgaagtatacgggtttggctccaggaagcgtggtcaacttggtatctccaaggataagatcaagtcaattagtcttcctgaacaaatttatggacttgaaggtgtaaaagttactagcatcattgcaaatggagatcaaagtgcagcattatctgctgatgggcatatgtacacttggggaaaagggtttggtggcacttcaagtgctcactccccacagtctttacctacatcggtatggtttaccaaagctgctgttggatggaatcatgctttattattaactgctggtggagaagttttcatgctcggtggaaatcaccatggagtccttggtaatcctgacaaaatgactccagccaggctcttagcagattcaggagaagctatcctggataaagtccctggtcttgaagagaataagatcatggacattgcagccggggctgagcactctgttattgtcacagatgatggagaaattaagacatggggctggggtgaacatggtcagcttggcttgggaaatacatgcgatcaaacaactcctcaagaagtgagtctcggacacaaatctcggaaagaagctgctgcaatcaagatttactgtggtagtgggttcacaatggctgtaagaacaccgcatcttccttctcagactgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

RCC1 RRM_1

Protein Analysis

359

Amino Acids

38.11

Weight (kDa)

6.42

Isoelectric Point (pI)

27.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27060
fragaria_vesca	FvH4_4g32090 FvH4_4g32090 FvH4_4g32090 FvH4_4g32090 FvH4_4g32090 FvH4_4g32090 FvH4_4g32090
malus_domestica	MD16G1079700.v1.1
prunus_persica	Prupe.1G267000_v2.0.a1
pyrus_communis	pycom01g03630 pycom16g06880
rosa_chinensis	RchiOBHm_Chr4g0440781
rosa_laevigata	RLG00000006154
rosa_multiflora	Rmu_sc0000424.1_g000006 Rmu_sc0000780.1_g000020 Rmu_sc0022158.1_g000002
rosa_roxburghii	Rroxscaffold_5G00381540
rosa_rugosa	Rorug04G0327800 Rorug04G0327800 Rorug04G0327900
rosa_samantha	Rh4AG379700 Rh4BG392600 Rh4CG407400 Rh4DG386400
rosa_wichuraiana	Rw4G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	79
AccI	GTMKAC	1 cut(s)	420
AciI	CCGC	4 cut(s)	85, 153, 245, 1055
AcsI	RAATTY	2 cut(s)	225, 498
AfaI	GTAC	1 cut(s)	584
AflIII	ACRYGT	1 cut(s)	260
AgsI	TTSAA	7 cut(s)	62, 70, 170, 230, 512, 615, 827
AhdI	GACNNNNNGTC	1 cut(s)	144
AjnI	CCWGG	4 cut(s)	434, 773, 804, 817
AluBI	AGCT	7 cut(s)	45, 173, 286, 665, 800, 928, 1001
AluI	AGCT	7 cut(s)	45, 173, 286, 665, 800, 928, 1001
Alw21I	GWGCWC	2 cut(s)	622, 867
Alw26I	GTCTC	2 cut(s)	334, 980
Ama87I	CYCGRG	1 cut(s)	287
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	6 cut(s)	82, 557, 665, 851, 1001, 1004
ApoI	RAATTY	2 cut(s)	225, 498
Asp700I	GAANNNNTTC	1 cut(s)	192
AspLEI	GCGC	1 cut(s)	378
AsuC2I	CCSGG	1 cut(s)	856
AsuHPI	GGTGA	4 cut(s)	308, 413, 725, 926
AvaI	CYCGRG	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	479
Bbv12I	GWGCWC	2 cut(s)	622, 867
BbvI	GCAGC	6 cut(s)	94, 569, 652, 863, 988, 991
BccI	CCATC	5 cut(s)	228, 263, 566, 669, 881
BceAI	ACGGC	1 cut(s)	140
BciT130I	CCWGG	4 cut(s)	436, 775, 806, 819
BcnI	CCSGG	1 cut(s)	856
BcoDI	GTCTC	2 cut(s)	334, 980
BfaI	CTAG	2 cut(s)	32, 528
BfuAI	ACCTGC	1 cut(s)	79
BisI	GCNGC	7 cut(s)	83, 86, 558, 666, 852, 1002, 1005
BlpI	GCTNAGC	1 cut(s)	861
BlsI	GCNGC	7 cut(s)	84, 87, 559, 667, 853, 1003, 1006
Bme1390I	CCNGG	5 cut(s)	436, 775, 806, 819, 856
BmeRI	GACNNNNNGTC	1 cut(s)	144
BmeT110I	CYCGRG	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	433
BmrFI	CCNGG	5 cut(s)	436, 775, 806, 819, 856
BmsI	GCATC	3 cut(s)	232, 540, 1066
BpiI	GAAGAC	1 cut(s)	479
BpmI	CTGGAG	2 cut(s)	418, 753
Bpu1102I	GCTNAGC	1 cut(s)	861
BpuEI	CTTGAG	1 cut(s)	948
BpuMI	CCSGG	1 cut(s)	856
BsaJI	CCNNGG	5 cut(s)	462, 736, 745, 817, 855
BsaXI	ACNNNNNCTCC	2 cut(s)	402, 432
Bse3DI	GCAATG	3 cut(s)	310, 534, 846
BseBI	CCWGG	4 cut(s)	436, 775, 806, 819
BseDI	CCNNGG	5 cut(s)	462, 736, 745, 817, 855
BseGI	GGATG	2 cut(s)	256, 680
BseMI	GCAATG	3 cut(s)	310, 534, 846
BseMII	CTCAG	1 cut(s)	852
BseRI	GAGGAG	3 cut(s)	121, 252, 951
BseXI	GCAGC	6 cut(s)	94, 569, 652, 863, 988, 991
BseYI	CCCAGC	1 cut(s)	909
BsgI	GTGCAG	1 cut(s)	576
BshFI	GGCC	1 cut(s)	192
BsiHKAI	GWGCWC	2 cut(s)	622, 867
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	1 cut(s)	855
BslFI	GGGAC	1 cut(s)	800
BsmAI	GTCTC	2 cut(s)	334, 980
BsmFI	GGGAC	1 cut(s)	800
BsnI	GGCC	1 cut(s)	192
BsoBI	CYCGRG	1 cut(s)	287
Bsp1286I	GDGCHC	2 cut(s)	622, 867
Bsp1407I	TGTACA	1 cut(s)	582
Bsp143I	GATC	4 cut(s)	471, 547, 837, 949
Bsp1720I	GCTNAGC	1 cut(s)	861
Bsp19I	CCATGG	1 cut(s)	736
BspACI	CCGC	4 cut(s)	85, 153, 245, 1055
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	1 cut(s)	853
BspLI	GGNNCC	1 cut(s)	433
BspMI	ACCTGC	1 cut(s)	79
BsrDI	GCAATG	3 cut(s)	310, 534, 846
BsrGI	TGTACA	1 cut(s)	582
BssECI	CCNNGG	5 cut(s)	462, 736, 745, 817, 855
BssMI	GATC	4 cut(s)	471, 547, 837, 949
BssNAI	GTATAC	1 cut(s)	421
BssT1I	CCWWGG	3 cut(s)	462, 736, 745
Bst1107I	GTATAC	1 cut(s)	421
Bst2UI	CCWGG	4 cut(s)	436, 775, 806, 819
Bst4CI	ACNGT	3 cut(s)	58, 633, 1022
Bst6I	CTCTTC	1 cut(s)	822
BstAPI	GCANNNNNTGC	1 cut(s)	566
BstAUI	TGTACA	1 cut(s)	582
BstDEI	CTNAG	3 cut(s)	781, 861, 1068
BstDSI	CCRYGG	1 cut(s)	736
BstF5I	GGATG	2 cut(s)	256, 680
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	4 cut(s)	474, 550, 840, 952
BstMAI	GTCTC	2 cut(s)	334, 980
BstMBI	GATC	4 cut(s)	471, 547, 837, 949
BstMWI	GCNNNNNNNGC	2 cut(s)	566, 857
BstNI	CCWGG	4 cut(s)	436, 775, 806, 819
BstNSI	RCATGY	3 cut(s)	264, 369, 948
BstSCI	CCNGG	5 cut(s)	434, 773, 804, 817, 854
BstV1I	GCAGC	6 cut(s)	94, 569, 652, 863, 988, 991
BstV2I	GAAGAC	1 cut(s)	479
BstZ17I	GTATAC	1 cut(s)	421
BsuRI	GGCC	1 cut(s)	192
BtgI	CCRYGG	1 cut(s)	736
BtsCI	GGATG	2 cut(s)	256, 680
BveI	ACCTGC	1 cut(s)	79
CfoI	GCGC	1 cut(s)	378
Csp6I	GTAC	1 cut(s)	583
CviQI	GTAC	1 cut(s)	583
DdeI	CTNAG	3 cut(s)	781, 861, 1068
DpnI	GATC	4 cut(s)	473, 549, 839, 951
DpnII	GATC	4 cut(s)	471, 547, 837, 949
DriI	GACNNNNNGTC	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	822
Eam1105I	GACNNNNNGTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	822
EciI	GGCGGA	1 cut(s)	142
Eco130I	CCWWGG	3 cut(s)	462, 736, 745
Eco147I	AGGCCT	1 cut(s)	192
Eco88I	CYCGRG	1 cut(s)	287
EcoRII	CCWGG	4 cut(s)	434, 773, 804, 817
EcoT14I	CCWWGG	3 cut(s)	462, 736, 745
ErhI	CCWWGG	3 cut(s)	462, 736, 745
FaqI	GGGAC	1 cut(s)	800
FauI	CCCGC	1 cut(s)	238
FauNDI	CATATG	1 cut(s)	579
FblI	GTMKAC	1 cut(s)	420
Fnu4HI	GCNGC	7 cut(s)	83, 86, 558, 666, 852, 1002, 1005
FokI	GGATG	2 cut(s)	263, 687
Fsp4HI	GCNGC	7 cut(s)	83, 86, 558, 666, 852, 1002, 1005
FspBI	CTAG	2 cut(s)	32, 528
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	7 cut(s)	83, 86, 558, 666, 852, 1002, 1005
GsaI	CCCAGC	1 cut(s)	913
GsuI	CTGGAG	2 cut(s)	418, 753
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	1 cut(s)	855
HhaI	GCGC	1 cut(s)	378
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HincII	GTYRAC	1 cut(s)	449
HindII	GTYRAC	1 cut(s)	449
HindIII	AAGCTT	1 cut(s)	171
HinfI	GANTC	7 cut(s)	28, 404, 679, 741, 766, 788, 973
HpaII	CCGG	1 cut(s)	855
HphI	GGTGA	4 cut(s)	308, 413, 725, 926
Hpy166II	GTNNAC	8 cut(s)	217, 308, 421, 449, 585, 657, 917, 1035
Hpy188I	TCNGA	3 cut(s)	980, 993, 1071
Hpy188III	TCNNGA	9 cut(s)	25, 185, 408, 491, 755, 792, 824, 965, 1012
Hpy8I	GTNNAC	8 cut(s)	217, 308, 421, 449, 585, 657, 917, 1035
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	5 cut(s)	76, 182, 203, 506, 1074
HpyCH4III	ACNGT	3 cut(s)	58, 633, 1022
HpyCH4V	TGCA	5 cut(s)	315, 539, 557, 851, 1007
HpyF10VI	GCNNNNNNNGC	2 cut(s)	566, 857
HpyF3I	CTNAG	3 cut(s)	781, 861, 1068
HspAI	GCGC	1 cut(s)	376
Kzo9I	GATC	4 cut(s)	471, 547, 837, 949
LmnI	GCTCC	1 cut(s)	437
Lsp1109I	GCAGC	6 cut(s)	94, 569, 652, 863, 988, 991
LweI	GCATC	3 cut(s)	232, 540, 1066
MaeI	CTAG	2 cut(s)	32, 528
MaeIII	GTNAC	2 cut(s)	523, 877
MalI	GATC	4 cut(s)	473, 549, 839, 951
MboI	GATC	4 cut(s)	471, 547, 837, 949
MboII	GAAGA	4 cut(s)	115, 479, 839, 1052
MhlI	GDGCHC	2 cut(s)	622, 867
MluCI	AATT	6 cut(s)	48, 204, 225, 480, 498, 894
MlyI	GAGTC	3 cut(s)	750, 760, 982
MmeI	TCCRAC	1 cut(s)	652
MnlI	CCTC	5 cut(s)	32, 139, 142, 230, 972
MroXI	GAANNNNTTC	1 cut(s)	192
MseI	TTAA	2 cut(s)	695, 897
MslI	CAYNNNNRTG	1 cut(s)	649
MspA1I	CMGCKG	1 cut(s)	85
MspI	CCGG	1 cut(s)	855
MspR9I	CCNGG	5 cut(s)	436, 775, 806, 819, 856
MvaI	CCWGG	4 cut(s)	436, 775, 806, 819
MwoI	GCNNNNNNNGC	2 cut(s)	566, 857
NciI	CCSGG	1 cut(s)	856
NcoI	CCATGG	1 cut(s)	736
NdeI	CATATG	1 cut(s)	579
NdeII	GATC	4 cut(s)	471, 547, 837, 949
NlaIV	GGNNCC	1 cut(s)	433
NmuCI	GTSAC	1 cut(s)	877
NspI	RCATGY	3 cut(s)	264, 369, 948
PceI	AGGCCT	1 cut(s)	192
PciI	ACATGT	1 cut(s)	260
PdmI	GAANNNNTTC	1 cut(s)	192
PfeI	GAWTC	4 cut(s)	28, 404, 679, 788
PfoI	TCCNGGA	2 cut(s)	434, 804
PkrI	GCNGC	7 cut(s)	84, 87, 559, 667, 853, 1003, 1006
PleI	GAGTC	3 cut(s)	749, 760, 981
PpsI	GAGTC	3 cut(s)	749, 760, 981
PscI	ACATGT	1 cut(s)	260
Psp6I	CCWGG	4 cut(s)	434, 773, 804, 817
PspFI	CCCAGC	1 cut(s)	909
PspGI	CCWGG	4 cut(s)	434, 773, 804, 817
PspN4I	GGNNCC	1 cut(s)	433
RsaI	GTAC	1 cut(s)	584
RsaNI	GTAC	1 cut(s)	583
RseI	CAYNNNNRTG	1 cut(s)	649
SaqAI	TTAA	2 cut(s)	695, 897
SatI	GCNGC	7 cut(s)	83, 86, 558, 666, 852, 1002, 1005
Sau3AI	GATC	4 cut(s)	471, 547, 837, 949
SchI	GAGTC	3 cut(s)	750, 760, 982
ScrFI	CCNGG	5 cut(s)	436, 775, 806, 819, 856
SduI	GDGCHC	2 cut(s)	622, 867
SfaNI	GCATC	3 cut(s)	232, 540, 1066
SmiMI	CAYNNNNRTG	1 cut(s)	649
SmlI	CTYRAG	1 cut(s)	963
SmoI	CTYRAG	1 cut(s)	963
Sse9I	AATT	6 cut(s)	48, 204, 225, 480, 498, 894
SseBI	AGGCCT	1 cut(s)	192
SsiI	CCGC	4 cut(s)	85, 153, 245, 1055
SspMI	CTAG	2 cut(s)	32, 528
StuI	AGGCCT	1 cut(s)	192
StyD4I	CCNGG	5 cut(s)	434, 773, 804, 817, 854
StyI	CCWWGG	3 cut(s)	462, 736, 745
TaaI	ACNGT	3 cut(s)	58, 633, 1022
TaqI	TCGA	1 cut(s)	53
TasI	AATT	6 cut(s)	48, 204, 225, 480, 498, 894
TatI	WGTACW	1 cut(s)	582
TauI	GCSGC	1 cut(s)	88
TfiI	GAWTC	4 cut(s)	28, 404, 679, 788
Tru1I	TTAA	2 cut(s)	695, 897
Tru9I	TTAA	2 cut(s)	695, 897
TseFI	GTSAC	1 cut(s)	877
TseI	GCWGC	6 cut(s)	82, 557, 665, 851, 1001, 1004
Tsp45I	GTSAC	1 cut(s)	877
TspDTI	ATGAA	3 cut(s)	27, 429, 706
XapI	RAATTY	2 cut(s)	225, 498
XceI	RCATGY	3 cut(s)	264, 369, 948
XcmI	CCANNNNNNNNNTGG	1 cut(s)	743
XmiI	GTMKAC	1 cut(s)	420
XmnI	GAANNNNTTC	1 cut(s)	192
XspI	CTAG	2 cut(s)	32, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.