FvH4_4g32090

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0006605
Physical Location & Seq
Forward (+)
30901979 .. 30905190
3212 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g32090.t5

Sequence Viewer

Length: 1194 bp
ATGGAAGAGAATGAAGAAGGCAGAGTAAAGGAGGAGGATGAAGAAGAAGAGCAAGAAGAAGTATGGAGTTGGGGGGCAGGAACAGATGGGCAGCTGGGCACGGGGAAGCTACAGGATGAGCTCCTCCCTCAGTTGCTTTCTCTACCTTCGCTCTCAGCCGTAGGATCAATCTCTCTCCTCGCCTGCGGCGGCGCTCACGTTCTCGCCTTAACCTCAGGTGGGAAGGTGCTGACATGGGGAAGAGGCACGTCTGGTCAGCTTGGTCATTCTGAGATGGTAAATAGCCCACATCCGAAGCTTGTGATGTCTTTGGACACCTACTTCATTACACATGCTTCTGCTGGCTGGAACCACTCAGGTTTCGTTTCAGATGCGGGGGATGCTTTCACATGTGGAGACGGGTCATTTGGTCAGCTCGGGCATGGTGATTACAGTTCACATTGCAGTCCTGTAAAAGTCTCTTTCCTTGATGACCTTGGTGTTAAGCAGATAGCATGTGGTATGCGCCATTCGCTTGTTTTGCTGAAAGGTGATTCTGGCGATGAAGTTTATGGGTTTGGCTCTGGGAAGCGTGGTCAACTCGGTATCTCCAAGAAGATCAAGGCAATTAGTGTTCCTGAACGAATTTATGAATTTGAAGGTGTAAAAGTCACTAGCATTATTGCAAATGGAGATCAAAGTGCAGCATTATCTGCTGATGGACATTTGTACACTTGGGGAAAAGGGTTCGGTGGCACTTCAAGTACTTACTCCCCACAGTCTTTAGCTACATCGTTATGGTTTACCAAAGCTGCTGTTGGATGGAATCATGTTCTATTATTAACTGCTGATGGAGAAGTTCTGATGCTTGGCGGAAATCACCATGGAGTTCTTGGTAATCCTGAAAAAATGTCACCAGCCAGGCTCTTAGCGGATTCAGGAGAAGCTATGCTGGAAAAAGTCCCTGGACTTGAAGGGAATAGGATCATGGACATAGCAGCCGGAGCTGAGCACTCTGTTATTGTGACAGGTCATGGAGTGATTAAGACATGGGGCTGGGGCGAACACGGTCAGCTTGGCTTGGGAAATGCATGTAATCAAACGAGTCCTCAAGAAGTGAGTCTGGGACACAGATCTCAGACAGAAGCTACTGCAATCAAGATTTACTGTGGCAGCGGGTTCACAATGGCTGTAAGAACACCACATATTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
RCC1 RRM_1

Protein Analysis

398

Amino Acids

41.75

Weight (kDa)

5.39

Isoelectric Point (pI)

33.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 18 - 272 6.1e-52 RCC1-like domain
RCC1 PF00415 20 - 70 3.8e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 59 - 86 7.5e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 74 - 121 6.5e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 126 - 174 2.3e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 182 - 230 1.9e-06 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 186, 189, 374, 852, 911, 1155
AclWI GGATC 2 cut(s) 172, 971
AcsI RAATTY 2 cut(s) 624, 632
AfaI GTAC 2 cut(s) 710, 745
AfiI CCNNNNNNNGG 1 cut(s) 219
AflIII ACRYGT 1 cut(s) 389
AgsI TTSAA 3 cut(s) 638, 741, 953
AjiI CACGTC 1 cut(s) 249
AjnI CCWGG 2 cut(s) 899, 943
Alw21I GWGCWC 2 cut(s) 123, 993
Alw26I GTCTC 2 cut(s) 390, 463
AlwI GGATC 2 cut(s) 172, 971
Ama87I CYCGRG 1 cut(s) 416
ApeKI GCWGC 5 cut(s) 91, 683, 791, 977, 1152
ApoI RAATTY 2 cut(s) 624, 632
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
AspLEI GCGC 2 cut(s) 194, 507
AsuHPI GGTGA 4 cut(s) 437, 542, 851, 885
AvaI CYCGRG 1 cut(s) 416
AxyI CCTNAGG 1 cut(s) 214
BaeGI GKGCMC 1 cut(s) 101
BanII GRGCYC 1 cut(s) 123
Bbv12I GWGCWC 2 cut(s) 123, 993
BbvI GCAGC 5 cut(s) 103, 695, 778, 989, 1164
BccI CCATC 5 cut(s) 80, 268, 692, 795, 824
BceAI ACGGC 1 cut(s) 143
BciT130I CCWGG 2 cut(s) 901, 945
BcoDI GTCTC 2 cut(s) 390, 463
BfaI CTAG 1 cut(s) 654
BfmI CTRYAG 1 cut(s) 110
BfoI RGCGCY 1 cut(s) 195
BglII AGATCT 1 cut(s) 1112
BisI GCNGC 7 cut(s) 92, 187, 190, 684, 792, 978, 1153
BlpI GCTNAGC 1 cut(s) 987
BlsI GCNGC 7 cut(s) 93, 188, 191, 685, 793, 979, 1154
BmcAI AGTACT 1 cut(s) 745
Bme1390I CCNGG 2 cut(s) 901, 945
BmeT110I CYCGRG 1 cut(s) 416
BmgBI CACGTC 1 cut(s) 249
BmiI GGNNCC 1 cut(s) 350
BmrFI CCNGG 2 cut(s) 901, 945
BmsI GCATC 3 cut(s) 361, 370, 834
Bpu1102I GCTNAGC 1 cut(s) 987
BpuEI CTTGAG 1 cut(s) 1074
BsaJI CCNNGG 3 cut(s) 475, 862, 943
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse21I CCTNAGG 1 cut(s) 214
Bse3DI GCAATG 1 cut(s) 439
BseBI CCWGG 2 cut(s) 901, 945
BseDI CCNNGG 3 cut(s) 475, 862, 943
BseGI GGATG 5 cut(s) 43, 121, 289, 385, 806
BseLI CCNNNNNNNGG 1 cut(s) 219
BseMI GCAATG 1 cut(s) 439
BseMII CTCAG 7 cut(s) 143, 168, 228, 261, 369, 978, 1130
BseRI GAGGAG 3 cut(s) 47, 113, 167
BseSI GKGCMC 1 cut(s) 101
BseXI GCAGC 5 cut(s) 103, 695, 778, 989, 1164
BseYI CCCAGC 2 cut(s) 94, 1035
BsgI GTGCAG 1 cut(s) 702
BsiHKAI GWGCWC 2 cut(s) 123, 993
BsiHKCI CYCGRG 1 cut(s) 416
BsiSI CCGG 1 cut(s) 981
BslFI GGGAC 2 cut(s) 926, 1119
BslI CCNNNNNNNGG 1 cut(s) 219
BsmAI GTCTC 2 cut(s) 390, 463
BsmBI CGTCTC 1 cut(s) 390
BsmFI GGGAC 2 cut(s) 926, 1119
BsoBI CYCGRG 1 cut(s) 416
Bsp1286I GDGCHC 3 cut(s) 101, 123, 993
Bsp1407I TGTACA 1 cut(s) 708
Bsp143I GATC 5 cut(s) 164, 597, 673, 963, 1112
Bsp1720I GCTNAGC 1 cut(s) 987
Bsp19I CCATGG 1 cut(s) 862
BspACI CCGC 6 cut(s) 186, 189, 374, 852, 911, 1155
BspCNI CTCAG 7 cut(s) 142, 167, 227, 262, 368, 979, 1129
BspLI GGNNCC 1 cut(s) 350
BspPI GGATC 2 cut(s) 172, 971
BspQI GCTCTTC 1 cut(s) 42
BsrDI GCAATG 1 cut(s) 439
BsrGI TGTACA 1 cut(s) 708
BssECI CCNNGG 3 cut(s) 475, 862, 943
BssMI GATC 5 cut(s) 164, 597, 673, 963, 1112
BssT1I CCWWGG 2 cut(s) 475, 862
Bst2UI CCWGG 2 cut(s) 901, 945
Bst4CI ACNGT 4 cut(s) 434, 759, 1049, 1148
Bst6I CTCTTC 2 cut(s) 42, 235
BstAPI GCANNNNNTGC 1 cut(s) 692
BstAUI TGTACA 1 cut(s) 708
BstC8I GCNNGC 2 cut(s) 184, 343
BstDEI CTNAG 9 cut(s) 129, 154, 214, 270, 355, 907, 987, 1116, 1191
BstDSI CCRYGG 1 cut(s) 862
BstF5I GGATG 5 cut(s) 43, 121, 289, 385, 806
BstH2I RGCGCY 1 cut(s) 195
BstHHI GCGC 2 cut(s) 194, 507
BstKTI GATC 5 cut(s) 167, 600, 676, 966, 1115
BstMAI GTCTC 2 cut(s) 390, 463
BstMBI GATC 5 cut(s) 164, 597, 673, 963, 1112
BstMWI GCNNNNNNNGC 5 cut(s) 380, 511, 520, 692, 983
BstNI CCWGG 2 cut(s) 901, 945
BstNSI RCATGY 4 cut(s) 335, 393, 498, 1074
BstSCI CCNGG 2 cut(s) 899, 943
BstSFI CTRYAG 1 cut(s) 110
BstSLI GKGCMC 1 cut(s) 101
BstV1I GCAGC 5 cut(s) 103, 695, 778, 989, 1164
BstX2I RGATCY 1 cut(s) 1112
BstYI RGATCY 1 cut(s) 1112
Bsu36I CCTNAGG 1 cut(s) 214
BtgI CCRYGG 1 cut(s) 862
BtgZI GCGATG 1 cut(s) 555
BtrI CACGTC 1 cut(s) 249
BtsCI GGATG 5 cut(s) 43, 121, 289, 385, 806
Cac8I GCNNGC 2 cut(s) 184, 343
CfoI GCGC 2 cut(s) 194, 507
Csp6I GTAC 2 cut(s) 709, 744
CviQI GTAC 2 cut(s) 709, 744
DdeI CTNAG 9 cut(s) 129, 154, 214, 270, 355, 907, 987, 1116, 1191
DpnI GATC 5 cut(s) 166, 599, 675, 965, 1114
DpnII GATC 5 cut(s) 164, 597, 673, 963, 1112
Eam1104I CTCTTC 2 cut(s) 42, 235
EarI CTCTTC 2 cut(s) 42, 235
EciI GGCGGA 1 cut(s) 867
Ecl136II GAGCTC 1 cut(s) 121
Eco130I CCWWGG 2 cut(s) 475, 862
Eco24I GRGCYC 1 cut(s) 123
Eco53kI GAGCTC 1 cut(s) 121
Eco81I CCTNAGG 1 cut(s) 214
Eco88I CYCGRG 1 cut(s) 416
EcoICRI GAGCTC 1 cut(s) 121
EcoRII CCWGG 2 cut(s) 899, 943
EcoT14I CCWWGG 2 cut(s) 475, 862
EcoT22I ATGCAT 1 cut(s) 1072
EcoT38I GRGCYC 1 cut(s) 123
ErhI CCWWGG 2 cut(s) 475, 862
Esp3I CGTCTC 1 cut(s) 390
FaqI GGGAC 2 cut(s) 926, 1119
FauI CCCGC 2 cut(s) 367, 1148
Fnu4HI GCNGC 7 cut(s) 92, 187, 190, 684, 792, 978, 1153
FokI GGATG 5 cut(s) 50, 128, 276, 392, 813
FriOI GRGCYC 1 cut(s) 123
Fsp4HI GCNGC 7 cut(s) 92, 187, 190, 684, 792, 978, 1153
FspBI CTAG 1 cut(s) 654
GlaI GCGC 2 cut(s) 193, 506
GluI GCNGC 7 cut(s) 92, 187, 190, 684, 792, 978, 1153
GsaI CCCAGC 2 cut(s) 98, 1039
HaeII RGCGCY 1 cut(s) 195
HapII CCGG 1 cut(s) 981
HhaI GCGC 2 cut(s) 194, 507
Hin6I GCGC 2 cut(s) 192, 505
HinP1I GCGC 2 cut(s) 192, 505
HincII GTYRAC 1 cut(s) 578
HindII GTYRAC 1 cut(s) 578
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 5 cut(s) 533, 805, 914, 1084, 1099
HpaII CCGG 1 cut(s) 981
HphI GGTGA 4 cut(s) 437, 542, 851, 885
Hpy166II GTNNAC 5 cut(s) 437, 578, 711, 783, 1161
Hpy188I TCNGA 5 cut(s) 271, 294, 370, 843, 1119
Hpy188III TCNNGA 5 cut(s) 617, 881, 918, 1091, 1138
Hpy8I GTNNAC 5 cut(s) 437, 578, 711, 783, 1161
HpyAV CCTTC 5 cut(s) 11, 156, 217, 632, 947
HpyCH4III ACNGT 4 cut(s) 434, 759, 1049, 1148
HpyCH4IV ACGT 2 cut(s) 198, 248
HpyCH4V TGCA 5 cut(s) 444, 665, 683, 1070, 1133
HpyF10VI GCNNNNNNNGC 5 cut(s) 380, 511, 520, 692, 983
HpyF3I CTNAG 9 cut(s) 129, 154, 214, 270, 355, 907, 987, 1116, 1191
HpySE526I ACGT 2 cut(s) 198, 248
HspAI GCGC 2 cut(s) 192, 505
Kzo9I GATC 5 cut(s) 164, 597, 673, 963, 1112
LguI GCTCTTC 1 cut(s) 42
LmnI GCTCC 2 cut(s) 126, 983
Lsp1109I GCAGC 5 cut(s) 103, 695, 778, 989, 1164
LweI GCATC 3 cut(s) 361, 370, 834
MaeI CTAG 1 cut(s) 654
MaeII ACGT 2 cut(s) 198, 248
MaeIII GTNAC 3 cut(s) 649, 891, 1003
MalI GATC 5 cut(s) 166, 599, 675, 965, 1114
MboI GATC 5 cut(s) 164, 597, 673, 963, 1112
MboII GAAGA 8 cut(s) 17, 26, 53, 56, 59, 68, 252, 607
MflI RGATCY 1 cut(s) 1112
MhlI GDGCHC 3 cut(s) 101, 123, 993
MluCI AATT 3 cut(s) 606, 624, 632
MlyI GAGTC 2 cut(s) 1093, 1108
MmeI TCCRAC 1 cut(s) 778
MnlI CCTC 8 cut(s) 25, 28, 134, 138, 188, 223, 236, 1098
Mph1103I ATGCAT 1 cut(s) 1072
MseI TTAA 4 cut(s) 209, 483, 821, 1023
MslI CAYNNNNRTG 1 cut(s) 775
MspA1I CMGCKG 2 cut(s) 94, 1155
MspI CCGG 1 cut(s) 981
MspR9I CCNGG 2 cut(s) 901, 945
MvaI CCWGG 2 cut(s) 901, 945
MwoI GCNNNNNNNGC 5 cut(s) 380, 511, 520, 692, 983
NcoI CCATGG 1 cut(s) 862
NdeII GATC 5 cut(s) 164, 597, 673, 963, 1112
NlaIV GGNNCC 1 cut(s) 350
NmuCI GTSAC 3 cut(s) 649, 891, 1003
NsiI ATGCAT 1 cut(s) 1072
NspI RCATGY 4 cut(s) 335, 393, 498, 1074
PciI ACATGT 1 cut(s) 389
PciSI GCTCTTC 1 cut(s) 42
PfeI GAWTC 3 cut(s) 533, 805, 914
PkrI GCNGC 7 cut(s) 93, 188, 191, 685, 793, 979, 1154
PleI GAGTC 2 cut(s) 1092, 1107
PpsI GAGTC 2 cut(s) 1092, 1107
PscI ACATGT 1 cut(s) 389
Psp124BI GAGCTC 1 cut(s) 123
Psp6I CCWGG 2 cut(s) 899, 943
PspFI CCCAGC 2 cut(s) 94, 1035
PspGI CCWGG 2 cut(s) 899, 943
PspN4I GGNNCC 1 cut(s) 350
PsuI RGATCY 1 cut(s) 1112
PvuII CAGCTG 1 cut(s) 94
RsaI GTAC 2 cut(s) 710, 745
RsaNI GTAC 2 cut(s) 709, 744
RseI CAYNNNNRTG 1 cut(s) 775
SacI GAGCTC 1 cut(s) 123
SapI GCTCTTC 1 cut(s) 42
SaqAI TTAA 4 cut(s) 209, 483, 821, 1023
SatI GCNGC 7 cut(s) 92, 187, 190, 684, 792, 978, 1153
Sau3AI GATC 5 cut(s) 164, 597, 673, 963, 1112
ScaI AGTACT 1 cut(s) 745
SchI GAGTC 2 cut(s) 1093, 1108
ScrFI CCNGG 2 cut(s) 901, 945
SduI GDGCHC 3 cut(s) 101, 123, 993
SfaNI GCATC 3 cut(s) 361, 370, 834
SfcI CTRYAG 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 775
SmlI CTYRAG 1 cut(s) 1089
SmoI CTYRAG 1 cut(s) 1089
Sse9I AATT 3 cut(s) 606, 624, 632
SsiI CCGC 6 cut(s) 186, 189, 374, 852, 911, 1155
SspMI CTAG 1 cut(s) 654
SstI GAGCTC 1 cut(s) 123
StyD4I CCNGG 2 cut(s) 899, 943
StyI CCWWGG 2 cut(s) 475, 862
TaaI ACNGT 4 cut(s) 434, 759, 1049, 1148
TaiI ACGT 2 cut(s) 201, 251
TasI AATT 3 cut(s) 606, 624, 632
TatI WGTACW 2 cut(s) 708, 743
TauI GCSGC 2 cut(s) 189, 192
TfiI GAWTC 3 cut(s) 533, 805, 914
Tru1I TTAA 4 cut(s) 209, 483, 821, 1023
Tru9I TTAA 4 cut(s) 209, 483, 821, 1023
TseFI GTSAC 3 cut(s) 649, 891, 1003
TseI GCWGC 5 cut(s) 91, 683, 791, 977, 1152
Tsp45I GTSAC 3 cut(s) 649, 891, 1003
TspDTI ATGAA 5 cut(s) 27, 54, 313, 558, 645
XapI RAATTY 2 cut(s) 624, 632
XceI RCATGY 4 cut(s) 335, 393, 498, 1074
XcmI CCANNNNNNNNNTGG 1 cut(s) 869
XspI CTAG 1 cut(s) 654
ZrmI AGTACT 1 cut(s) 745
Zsp2I ATGCAT 1 cut(s) 1072
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.