Rh4CG407400

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0006605
Physical Location & Seq
Forward (+)
65381271 .. 65383782
2512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG407400.1

Sequence Viewer

Length: 1206 bp
ATGGAAGAGAATGAAGAAGGCAGGGTAAAAAACGAAGAAGAAGAAGAAGAGCAACAAGTATGGAGTTGGGGGGCAGGAACGGACGGGCAGCTGGGCACGGCCAGGCTACAGGATGAGCTCCTCCCTCAGTTGCTTCGTCTACCTTCTCTCTCCTCCGTGGGACCCATCTCTCTCCTCGCCTGCGGCGGCGCTCACGTTCTCGCCTTAACATCAGGTGGGAAGGTGCTGACATGGGGAAGAGGCACATCTGGTCAGCTTGGCCATTCTGATAGGGTTAATAGCCCACATCCCAAGCTTGTAATGTCTTTGGACACCTACTTCATTACGCATGCTTCTGCTGGCTGGAACCACTCGGGTTTCGTTTCAGATGCGGGGGATGTTTTCACATGTGGAGATGGCTCATTTGGTCAGCTCGGGCATGGTGATTATAGTTTACATTGCAGTCCTGTCAAAGTCTCTTTCTTTGATGACCATTGTGTTGAGCAGATAGCATGTGGTATGCGCCATTCTCTTGTTTTGCTGAAAGGTGATTCAGGAGATGAAGTATACGGGTTTGGCTCCGGGAAGCGTGGTCAACTTGGTATCTCCAAGGATAAGATCAAGTCAATTAGTCTTCCTGAACAAATTTATGGACTTGAAGGTGTAAAAGTTACTAGCATCATTGCAAATGGAGATCAAAGTGCAGCATTATCTGCTGATGGGCATATGTACACTTGGGGAAAAGGGTTTGGTGGCACTTCAAGTGCTCACTCCCCACAGTCTCTACCTACATCGTTATGGTTTACCAAAGCTGCTGTTGGATGGAATCATGCTTTATTATTAACTGCTGGTGGAGAAGTTTTCATGCTCGGTGGAAATCACCATGGAGTCCTTGGTAATCCTGACAAAATGACTCCAGCCAGGCTCTTAGCAGATTCAGGAGAAGCTATCCTGGATAAAGTCCCTGGTCTTGAAGAGAATAGGATCATGGACATTGCAGCCGGGGCTGAGCACTCTGTTATTGTCACAGATGATGGAGAAATTAAGACATGGGGCTGGGGTGAACATGGTCAGCTTGGCTTGGGAAATACATGCGATCAAATAACTCCTCAAGAAGTGAGTCTCGGACACAAATCTCGGAAAGAAGCTGCTGCAATCAAGATTTACTGTGGTAGTGGGTTCACAATGGCTGTAAGAACACCGCATCTTCCTTCTCAGACTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
RCC1 RRM_1

Protein Analysis

401

Amino Acids

42.47

Weight (kDa)

5.38

Isoelectric Point (pI)

31.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 19 - 390 1.4e-80 RCC1-like domain
RCC1 PF00415 19 - 69 4.1e-10 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 58 - 85 1.2e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 73 - 120 2.5e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 125 - 173 2.2e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 181 - 230 6.3e-07 Regulator of chromosome condensation (RCC1) repeat
Alsin_RLD PF25384 270 - 388 1.1e-07 Alsin RCC1-like domain
RCC1_2 PF13540 324 - 351 1.3e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 338 - 391 8.3e-11 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 139, 546
AciI CCGC 4 cut(s) 183, 186, 371, 1181
AclWI GGATC 1 cut(s) 971
AcoI YGGCCR 2 cut(s) 99, 259
AcsI RAATTY 1 cut(s) 624
AfaI GTAC 1 cut(s) 710
AflIII ACRYGT 1 cut(s) 386
AgsI TTSAA 3 cut(s) 638, 741, 953
AjnI CCWGG 4 cut(s) 101, 899, 930, 943
AluBI AGCT 9 cut(s) 91, 118, 256, 295, 412, 791, 926, 1054, 1127
AluI AGCT 9 cut(s) 91, 118, 256, 295, 412, 791, 926, 1054, 1127
Alw21I GWGCWC 3 cut(s) 120, 748, 993
Alw26I GTCTC 3 cut(s) 460, 765, 1106
AlwI GGATC 1 cut(s) 971
Ama87I CYCGRG 2 cut(s) 352, 413
AoxI GGCC 2 cut(s) 99, 259
ApeKI GCWGC 6 cut(s) 88, 683, 791, 977, 1127, 1130
ApoI RAATTY 1 cut(s) 624
AspLEI GCGC 2 cut(s) 191, 504
AspS9I GGNCC 1 cut(s) 161
AsuC2I CCSGG 2 cut(s) 562, 982
AsuHPI GGTGA 4 cut(s) 434, 539, 851, 1052
AvaI CYCGRG 2 cut(s) 352, 413
AvaII GGWCC 1 cut(s) 161
BaeGI GKGCMC 1 cut(s) 98
BalI TGGCCA 1 cut(s) 261
BanII GRGCYC 1 cut(s) 120
BbsI GAAGAC 1 cut(s) 605
Bbv12I GWGCWC 3 cut(s) 120, 748, 993
BbvI GCAGC 6 cut(s) 100, 695, 778, 989, 1114, 1117
BccI CCATC 5 cut(s) 173, 389, 692, 795, 1007
BceAI ACGGC 1 cut(s) 114
BciT130I CCWGG 4 cut(s) 103, 901, 932, 945
BcnI CCSGG 2 cut(s) 562, 982
BcoDI GTCTC 3 cut(s) 460, 765, 1106
BfaI CTAG 1 cut(s) 654
BfmI CTRYAG 1 cut(s) 107
BfoI RGCGCY 1 cut(s) 192
BisI GCNGC 8 cut(s) 89, 184, 187, 684, 792, 978, 1128, 1131
BlpI GCTNAGC 1 cut(s) 987
BlsI GCNGC 8 cut(s) 90, 185, 188, 685, 793, 979, 1129, 1132
Bme1390I CCNGG 6 cut(s) 103, 562, 901, 932, 945, 982
Bme18I GGWCC 1 cut(s) 161
BmeT110I CYCGRG 2 cut(s) 352, 413
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 4 cut(s) 162, 163, 347, 559
BmrFI CCNGG 6 cut(s) 103, 562, 901, 932, 945, 982
BmsI GCATC 3 cut(s) 358, 666, 1192
BpiI GAAGAC 1 cut(s) 605
BpmI CTGGAG 1 cut(s) 879
Bpu1102I GCTNAGC 1 cut(s) 987
BpuEI CTTGAG 1 cut(s) 1074
BpuMI CCSGG 2 cut(s) 562, 982
BsaJI CCNNGG 6 cut(s) 156, 588, 862, 871, 943, 981
BsaXI ACNNNNNCTCC 2 cut(s) 528, 558
Bse3DI GCAATG 3 cut(s) 436, 660, 972
BseBI CCWGG 4 cut(s) 103, 901, 932, 945
BseDI CCNNGG 6 cut(s) 156, 588, 862, 871, 943, 981
BseGI GGATG 4 cut(s) 118, 286, 382, 806
BseMI GCAATG 3 cut(s) 436, 660, 972
BseMII CTCAG 2 cut(s) 140, 978
BseRI GAGGAG 4 cut(s) 110, 142, 164, 1077
BseSI GKGCMC 1 cut(s) 98
BseXI GCAGC 6 cut(s) 100, 695, 778, 989, 1114, 1117
BseYI CCCAGC 2 cut(s) 91, 1035
BsgI GTGCAG 1 cut(s) 702
BshFI GGCC 2 cut(s) 101, 261
BsiHKAI GWGCWC 3 cut(s) 120, 748, 993
BsiHKCI CYCGRG 2 cut(s) 352, 413
BsiSI CCGG 2 cut(s) 561, 981
BslFI GGGAC 2 cut(s) 174, 926
BsmAI GTCTC 3 cut(s) 460, 765, 1106
BsmFI GGGAC 2 cut(s) 174, 926
BsnI GGCC 2 cut(s) 101, 261
BsoBI CYCGRG 2 cut(s) 352, 413
Bsp1286I GDGCHC 4 cut(s) 98, 120, 748, 993
Bsp1407I TGTACA 1 cut(s) 708
Bsp143I GATC 4 cut(s) 597, 673, 963, 1075
Bsp1720I GCTNAGC 1 cut(s) 987
Bsp19I CCATGG 1 cut(s) 862
BspACI CCGC 4 cut(s) 183, 186, 371, 1181
BspANI GGCC 2 cut(s) 101, 261
BspCNI CTCAG 2 cut(s) 139, 979
BspLI GGNNCC 4 cut(s) 162, 163, 347, 559
BspPI GGATC 1 cut(s) 971
BspQI GCTCTTC 1 cut(s) 42
BsrDI GCAATG 3 cut(s) 436, 660, 972
BsrGI TGTACA 1 cut(s) 708
BssECI CCNNGG 6 cut(s) 156, 588, 862, 871, 943, 981
BssMI GATC 4 cut(s) 597, 673, 963, 1075
BssNAI GTATAC 1 cut(s) 547
BssT1I CCWWGG 3 cut(s) 588, 862, 871
Bst1107I GTATAC 1 cut(s) 547
Bst2UI CCWGG 4 cut(s) 103, 901, 932, 945
Bst4CI ACNGT 2 cut(s) 759, 1148
Bst6I CTCTTC 3 cut(s) 42, 232, 948
BstAPI GCANNNNNTGC 1 cut(s) 692
BstAUI TGTACA 1 cut(s) 708
BstC8I GCNNGC 3 cut(s) 181, 330, 340
BstDEI CTNAG 4 cut(s) 126, 907, 987, 1194
BstDSI CCRYGG 2 cut(s) 156, 862
BstF5I GGATG 4 cut(s) 118, 286, 382, 806
BstH2I RGCGCY 1 cut(s) 192
BstHHI GCGC 2 cut(s) 191, 504
BstKTI GATC 4 cut(s) 600, 676, 966, 1078
BstMAI GTCTC 3 cut(s) 460, 765, 1106
BstMBI GATC 4 cut(s) 597, 673, 963, 1075
BstMWI GCNNNNNNNGC 2 cut(s) 692, 983
BstNI CCWGG 4 cut(s) 103, 901, 932, 945
BstNSI RCATGY 4 cut(s) 332, 390, 495, 1074
BstSCI CCNGG 6 cut(s) 101, 560, 899, 930, 943, 980
BstSFI CTRYAG 1 cut(s) 107
BstSLI GKGCMC 1 cut(s) 98
BstV1I GCAGC 6 cut(s) 100, 695, 778, 989, 1114, 1117
BstV2I GAAGAC 1 cut(s) 605
BstZ17I GTATAC 1 cut(s) 547
BsuRI GGCC 2 cut(s) 101, 261
BtgI CCRYGG 2 cut(s) 156, 862
BtsCI GGATG 4 cut(s) 118, 286, 382, 806
Cac8I GCNNGC 3 cut(s) 181, 330, 340
CfoI GCGC 2 cut(s) 191, 504
Cfr13I GGNCC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 709
CviQI GTAC 1 cut(s) 709
DdeI CTNAG 4 cut(s) 126, 907, 987, 1194
DpnI GATC 4 cut(s) 599, 675, 965, 1077
DpnII GATC 4 cut(s) 597, 673, 963, 1075
EaeI YGGCCR 2 cut(s) 99, 259
Eam1104I CTCTTC 3 cut(s) 42, 232, 948
EarI CTCTTC 3 cut(s) 42, 232, 948
Ecl136II GAGCTC 1 cut(s) 118
Eco130I CCWWGG 3 cut(s) 588, 862, 871
Eco24I GRGCYC 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 161
Eco53kI GAGCTC 1 cut(s) 118
Eco88I CYCGRG 2 cut(s) 352, 413
EcoICRI GAGCTC 1 cut(s) 118
EcoO109I RGGNCCY 1 cut(s) 161
EcoRII CCWGG 4 cut(s) 101, 899, 930, 943
EcoT14I CCWWGG 3 cut(s) 588, 862, 871
EcoT38I GRGCYC 1 cut(s) 120
ErhI CCWWGG 3 cut(s) 588, 862, 871
FaqI GGGAC 2 cut(s) 174, 926
FauI CCCGC 1 cut(s) 364
FauNDI CATATG 1 cut(s) 705
FblI GTMKAC 2 cut(s) 139, 546
Fnu4HI GCNGC 8 cut(s) 89, 184, 187, 684, 792, 978, 1128, 1131
FokI GGATG 4 cut(s) 125, 273, 389, 813
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 8 cut(s) 89, 184, 187, 684, 792, 978, 1128, 1131
FspBI CTAG 1 cut(s) 654
GlaI GCGC 2 cut(s) 190, 503
GluI GCNGC 8 cut(s) 89, 184, 187, 684, 792, 978, 1128, 1131
GsaI CCCAGC 2 cut(s) 95, 1039
GsuI CTGGAG 1 cut(s) 879
HaeII RGCGCY 1 cut(s) 192
HaeIII GGCC 2 cut(s) 101, 261
HapII CCGG 2 cut(s) 561, 981
HhaI GCGC 2 cut(s) 191, 504
Hin6I GCGC 2 cut(s) 189, 502
HinP1I GCGC 2 cut(s) 189, 502
HincII GTYRAC 1 cut(s) 575
HindII GTYRAC 1 cut(s) 575
HindIII AAGCTT 1 cut(s) 293
HinfI GANTC 6 cut(s) 530, 805, 867, 892, 914, 1099
HpaII CCGG 2 cut(s) 561, 981
HphI GGTGA 4 cut(s) 434, 539, 851, 1052
Hpy166II GTNNAC 8 cut(s) 140, 434, 547, 575, 711, 783, 1043, 1161
Hpy188I TCNGA 5 cut(s) 268, 367, 1106, 1119, 1197
Hpy188III TCNNGA 7 cut(s) 534, 617, 881, 918, 950, 1091, 1138
Hpy8I GTNNAC 8 cut(s) 140, 434, 547, 575, 711, 783, 1043, 1161
HpyAV CCTTC 5 cut(s) 11, 153, 214, 632, 1200
HpyCH4III ACNGT 2 cut(s) 759, 1148
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 5 cut(s) 441, 665, 683, 977, 1133
HpyF10VI GCNNNNNNNGC 2 cut(s) 692, 983
HpyF3I CTNAG 4 cut(s) 126, 907, 987, 1194
HpySE526I ACGT 1 cut(s) 195
HspAI GCGC 2 cut(s) 189, 502
KflI GGGWCCC 1 cut(s) 161
Kzo9I GATC 4 cut(s) 597, 673, 963, 1075
LguI GCTCTTC 1 cut(s) 42
LmnI GCTCC 2 cut(s) 123, 563
Lsp1109I GCAGC 6 cut(s) 100, 695, 778, 989, 1114, 1117
LweI GCATC 3 cut(s) 358, 666, 1192
MaeI CTAG 1 cut(s) 654
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 2 cut(s) 649, 1003
MalI GATC 4 cut(s) 599, 675, 965, 1077
MboI GATC 4 cut(s) 597, 673, 963, 1075
MhlI GDGCHC 4 cut(s) 98, 120, 748, 993
MlsI TGGCCA 1 cut(s) 261
MluCI AATT 3 cut(s) 606, 624, 1020
MluNI TGGCCA 1 cut(s) 261
MlyI GAGTC 3 cut(s) 876, 886, 1108
MmeI TCCRAC 1 cut(s) 778
MnlI CCTC 6 cut(s) 131, 135, 163, 185, 233, 1098
Mox20I TGGCCA 1 cut(s) 261
MscI TGGCCA 1 cut(s) 261
MseI TTAA 4 cut(s) 206, 276, 821, 1023
MslI CAYNNNNRTG 1 cut(s) 775
Msp20I TGGCCA 1 cut(s) 261
MspA1I CMGCKG 1 cut(s) 91
MspI CCGG 2 cut(s) 561, 981
MspR9I CCNGG 6 cut(s) 103, 562, 901, 932, 945, 982
MvaI CCWGG 4 cut(s) 103, 901, 932, 945
MwoI GCNNNNNNNGC 2 cut(s) 692, 983
NciI CCSGG 2 cut(s) 562, 982
NcoI CCATGG 1 cut(s) 862
NdeI CATATG 1 cut(s) 705
NdeII GATC 4 cut(s) 597, 673, 963, 1075
NlaIV GGNNCC 4 cut(s) 162, 163, 347, 559
NmuCI GTSAC 1 cut(s) 1003
NspI RCATGY 4 cut(s) 332, 390, 495, 1074
PaeI GCATGC 1 cut(s) 332
PciI ACATGT 1 cut(s) 386
PciSI GCTCTTC 1 cut(s) 42
PfeI GAWTC 3 cut(s) 530, 805, 914
PfoI TCCNGGA 2 cut(s) 560, 930
PkrI GCNGC 8 cut(s) 90, 185, 188, 685, 793, 979, 1129, 1132
PleI GAGTC 3 cut(s) 875, 886, 1107
PpsI GAGTC 3 cut(s) 875, 886, 1107
PpuMI RGGWCCY 1 cut(s) 161
PscI ACATGT 1 cut(s) 386
Psp124BI GAGCTC 1 cut(s) 120
Psp5II RGGWCCY 1 cut(s) 161
Psp6I CCWGG 4 cut(s) 101, 899, 930, 943
PspFI CCCAGC 2 cut(s) 91, 1035
PspGI CCWGG 4 cut(s) 101, 899, 930, 943
PspN4I GGNNCC 4 cut(s) 162, 163, 347, 559
PspPI GGNCC 1 cut(s) 161
PspPPI RGGWCCY 1 cut(s) 161
PvuII CAGCTG 1 cut(s) 91
RsaI GTAC 1 cut(s) 710
RsaNI GTAC 1 cut(s) 709
RseI CAYNNNNRTG 1 cut(s) 775
SacI GAGCTC 1 cut(s) 120
SapI GCTCTTC 1 cut(s) 42
SaqAI TTAA 4 cut(s) 206, 276, 821, 1023
SatI GCNGC 8 cut(s) 89, 184, 187, 684, 792, 978, 1128, 1131
Sau3AI GATC 4 cut(s) 597, 673, 963, 1075
Sau96I GGNCC 1 cut(s) 161
SchI GAGTC 3 cut(s) 876, 886, 1108
ScrFI CCNGG 6 cut(s) 103, 562, 901, 932, 945, 982
SduI GDGCHC 4 cut(s) 98, 120, 748, 993
SfaNI GCATC 3 cut(s) 358, 666, 1192
SfcI CTRYAG 1 cut(s) 107
SinI GGWCC 1 cut(s) 161
SmiMI CAYNNNNRTG 1 cut(s) 775
SmlI CTYRAG 1 cut(s) 1089
SmoI CTYRAG 1 cut(s) 1089
SphI GCATGC 1 cut(s) 332
Sse9I AATT 3 cut(s) 606, 624, 1020
SsiI CCGC 4 cut(s) 183, 186, 371, 1181
SspMI CTAG 1 cut(s) 654
SstI GAGCTC 1 cut(s) 120
StyD4I CCNGG 6 cut(s) 101, 560, 899, 930, 943, 980
StyI CCWWGG 3 cut(s) 588, 862, 871
TaaI ACNGT 2 cut(s) 759, 1148
TaiI ACGT 1 cut(s) 198
TasI AATT 3 cut(s) 606, 624, 1020
TatI WGTACW 1 cut(s) 708
TauI GCSGC 2 cut(s) 186, 189
TfiI GAWTC 3 cut(s) 530, 805, 914
Tru1I TTAA 4 cut(s) 206, 276, 821, 1023
Tru9I TTAA 4 cut(s) 206, 276, 821, 1023
TseFI GTSAC 1 cut(s) 1003
TseI GCWGC 6 cut(s) 88, 683, 791, 977, 1127, 1130
Tsp45I GTSAC 1 cut(s) 1003
TspDTI ATGAA 4 cut(s) 27, 310, 555, 832
TspGWI ACGGA 2 cut(s) 95, 145
VpaK11BI GGWCC 1 cut(s) 161
XapI RAATTY 1 cut(s) 624
XceI RCATGY 4 cut(s) 332, 390, 495, 1074
XcmI CCANNNNNNNNNTGG 1 cut(s) 869
XmiI GTMKAC 2 cut(s) 139, 546
XspI CTAG 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.