Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006605

Physical Location & Seq

Genomic Coordinates Forward (+)

2751297 .. 2752626

Gene Structure 1330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g03630.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGAACGTGCTGTACGGGATGAATTTTGGGTGAATTTTGGTTCCACACTTGGAACCACTCGTTCCACATTTGGAACACAAAATTATAACATTTTAAGACAAAACTACTCCTTATCATTTTCAATATTTACACCATCCAAAAACCAAACCCTAAAATTCTATCTTTTTCGTTCCATCTTCTCTACCTGTTGCTGCCTTTTCCCGTATTTTCTTGGTTTCTCTGGTTTAACTTGTGCTTGGGAAAAAGAACAAAGTCTGATTTTTAAGGTTTATTACGATTTTGGTTTGGGTTCGGTTGTGAGCTTGGCTTTGTATGATGGAAAAAGCTGGTTCTGCATTTGGTCAACTGAAATGTTAATCAATTGGATGCATTTTAATGGTTATTTTACTGATTATTGGTTAGTGTGTATAATTAAGCCCATTGTTTACGATTGGAGGAAGGTTAGGGATCTTTTCACATGTGTAGATGGCTCGTTTGGTCAACTCGGGCATGGTGATTTCCAGTCACAGCGCTGTCCTGTCAAAGTCTCCTTGTTTGTTGATAAGCATGTGGAGCTAATAGCATGCGAAATGCGCCATTGGCTTGTTTTACTGAAAGTTTTTAAATGTAGTGAGGCTGATTTATGCGGATGTATATGTTTCGTTACATGCTTTAAGCTTTGGATTTTTGTACTACAAGAAGTCATTCCCTTTAATCGATATAACTCATTTGTCGTAGTGTATGATGTTTTCTGCAATCAATATGTTGCACGTGTTTCAGGAGATGAAGTTTATGGATTTGGTTATGGAAAGCGTGATCAACTGGGTATCTCCAAAGGTAAGATCAAATTAATTATGCAAGCATCGCTGCAAATGGAGATCATAGTGCAGCATTGTCTGGTGAGTGCAGCAAATCCCCCTTTCTTGATTTGGTCATATAAAGTTGATCACATTGCTTGTCATACGAATGTCCAAATTAAAAATGTACCAGTTCATGACAGATCTAAGGACTTCCATGCTAGTTTGGTCCATGGTTTCCCACATAGGAAAAAAGCCGGTGCTGATAGGAGGATATTTAGGCGACTTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

RCC1 RRM_1

Protein Analysis

357

Amino Acids

41.4

Weight (kDa)

8.88

Isoelectric Point (pI)

30.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27060
fragaria_vesca	FvH4_4g32090 FvH4_4g32090 FvH4_4g32090 FvH4_4g32090 FvH4_4g32090 FvH4_4g32090 FvH4_4g32090
malus_domestica	MD16G1079700.v1.1
prunus_persica	Prupe.1G267000_v2.0.a1
pyrus_communis	pycom01g03630 pycom16g06880
rosa_chinensis	RchiOBHm_Chr4g0440781
rosa_laevigata	RLG00000006154
rosa_multiflora	Rmu_sc0000424.1_g000006 Rmu_sc0000780.1_g000020 Rmu_sc0022158.1_g000002
rosa_roxburghii	Rroxscaffold_5G00381540
rosa_rugosa	Rorug04G0327800 Rorug04G0327800 Rorug04G0327900
rosa_samantha	Rh4AG379700 Rh4BG392600 Rh4CG407400 Rh4DG386400
rosa_wichuraiana	Rw4G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	87
AciI	CCGC	1 cut(s)	627
AclWI	GGATC	1 cut(s)	456
AcsI	RAATTY	3 cut(s)	23, 34, 155
AcvI	CACGTG	1 cut(s)	752
AfaI	GTAC	3 cut(s)	15, 672, 966
AfeI	AGCGCT	1 cut(s)	512
AflIII	ACRYGT	2 cut(s)	458, 751
AgsI	TTSAA	1 cut(s)	123
AluBI	AGCT	4 cut(s)	303, 327, 556, 658
AluI	AGCT	4 cut(s)	303, 327, 556, 658
Alw26I	GTCTC	1 cut(s)	532
AlwI	GGATC	1 cut(s)	456
Ama87I	CYCGRG	1 cut(s)	485
Aor51HI	AGCGCT	1 cut(s)	512
ApeKI	GCWGC	4 cut(s)	192, 847, 868, 887
ApoI	RAATTY	3 cut(s)	23, 34, 155
AseI	ATTAAT	1 cut(s)	830
Asp700I	GAANNNNTTC	1 cut(s)	684
AspLEI	GCGC	2 cut(s)	513, 576
AspS9I	GGNCC	1 cut(s)	1006
AsuHPI	GGTGA	3 cut(s)	43, 506, 892
AvaI	CYCGRG	1 cut(s)	485
AvaII	GGWCC	1 cut(s)	1006
BbrPI	CACGTG	1 cut(s)	752
BbvI	GCAGC	4 cut(s)	179, 834, 880, 899
BccI	CCATC	4 cut(s)	142, 182, 311, 461
BclI	TGATCA	2 cut(s)	796, 925
BcoDI	GTCTC	1 cut(s)	532
BfaI	CTAG	1 cut(s)	999
BfoI	RGCGCY	1 cut(s)	514
BglII	AGATCT	1 cut(s)	980
BisI	GCNGC	4 cut(s)	193, 848, 869, 888
BlsI	GCNGC	4 cut(s)	194, 849, 870, 889
Bme18I	GGWCC	1 cut(s)	1006
BmeT110I	CYCGRG	1 cut(s)	485
BmgT120I	GGNCC	1 cut(s)	1006
BmiI	GGNNCC	2 cut(s)	43, 55
BmrI	ACTGGG	1 cut(s)	812
BmsI	GCATC	2 cut(s)	357, 851
BmuI	ACTGGG	1 cut(s)	812
Bsa29I	ATCGAT	1 cut(s)	697
BsaAI	YACGTR	1 cut(s)	752
BsaJI	CCNNGG	1 cut(s)	1009
BsaXI	ACNNNNNCTCC	2 cut(s)	753, 783
Bse118I	RCCGGY	1 cut(s)	1034
Bse1I	ACTGG	3 cut(s)	502, 807, 968
Bse3DI	GCAATG	1 cut(s)	930
BseCI	ATCGAT	1 cut(s)	697
BseDI	CCNNGG	1 cut(s)	1009
BseGI	GGATG	4 cut(s)	25, 134, 372, 635
BseMI	GCAATG	1 cut(s)	930
BseNI	ACTGG	3 cut(s)	502, 807, 968
BseXI	GCAGC	4 cut(s)	179, 834, 880, 899
BsgI	GTGCAG	2 cut(s)	887, 906
BshVI	ATCGAT	1 cut(s)	697
BsiHKCI	CYCGRG	1 cut(s)	485
BsiSI	CCGG	1 cut(s)	1035
BsmAI	GTCTC	1 cut(s)	532
BsoBI	CYCGRG	1 cut(s)	485
Bsp143I	GATC	6 cut(s)	448, 796, 822, 858, 925, 980
Bsp19I	CCATGG	1 cut(s)	1009
BspACI	CCGC	1 cut(s)	627
BspDI	ATCGAT	1 cut(s)	697
BspHI	TCATGA	1 cut(s)	973
BspLI	GGNNCC	2 cut(s)	43, 55
BspPI	GGATC	1 cut(s)	456
BsrDI	GCAATG	1 cut(s)	930
BsrFI	RCCGGY	1 cut(s)	1034
BsrI	ACTGG	3 cut(s)	502, 807, 968
BssAI	RCCGGY	1 cut(s)	1034
BssECI	CCNNGG	1 cut(s)	1009
BssMI	GATC	6 cut(s)	448, 796, 822, 858, 925, 980
BssT1I	CCWWGG	1 cut(s)	1009
BstBAI	YACGTR	1 cut(s)	752
BstC8I	GCNNGC	2 cut(s)	565, 840
BstDEI	CTNAG	2 cut(s)	984, 1064
BstDSI	CCRYGG	1 cut(s)	1009
BstF5I	GGATG	4 cut(s)	25, 134, 372, 635
BstH2I	RGCGCY	1 cut(s)	514
BstHHI	GCGC	2 cut(s)	513, 576
BstKTI	GATC	6 cut(s)	451, 799, 825, 861, 928, 983
BstMAI	GTCTC	1 cut(s)	532
BstMBI	GATC	6 cut(s)	448, 796, 822, 858, 925, 980
BstMWI	GCNNNNNNNGC	5 cut(s)	333, 553, 573, 580, 844
BstNSI	RCATGY	4 cut(s)	462, 551, 567, 651
BstV1I	GCAGC	4 cut(s)	179, 834, 880, 899
BstX2I	RGATCY	2 cut(s)	448, 980
BstYI	RGATCY	2 cut(s)	448, 980
Bsu15I	ATCGAT	1 cut(s)	697
BsuTUI	ATCGAT	1 cut(s)	697
BtgI	CCRYGG	1 cut(s)	1009
BtgZI	GCGATG	1 cut(s)	828
BtsCI	GGATG	4 cut(s)	25, 134, 372, 635
Cac8I	GCNNGC	2 cut(s)	565, 840
CciI	TCATGA	1 cut(s)	973
CfoI	GCGC	2 cut(s)	513, 576
Cfr10I	RCCGGY	1 cut(s)	1034
Cfr13I	GGNCC	1 cut(s)	1006
ClaI	ATCGAT	1 cut(s)	697
Csp6I	GTAC	3 cut(s)	14, 671, 965
CviAII	CATG	8 cut(s)	459, 491, 548, 564, 648, 974, 995, 1010
CviQI	GTAC	3 cut(s)	14, 671, 965
DdeI	CTNAG	2 cut(s)	984, 1064
DpnI	GATC	6 cut(s)	450, 798, 824, 860, 927, 982
DpnII	GATC	6 cut(s)	448, 796, 822, 858, 925, 980
DraI	TTTAAA	1 cut(s)	604
Eco130I	CCWWGG	1 cut(s)	1009
Eco47I	GGWCC	1 cut(s)	1006
Eco47III	AGCGCT	1 cut(s)	512
Eco72I	CACGTG	1 cut(s)	752
Eco88I	CYCGRG	1 cut(s)	485
EcoT14I	CCWWGG	1 cut(s)	1009
EcoT22I	ATGCAT	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	1009
FaeI	CATG	8 cut(s)	462, 494, 551, 567, 651, 977, 998, 1013
FatI	CATG	8 cut(s)	458, 490, 547, 563, 647, 973, 994, 1009
FbaI	TGATCA	2 cut(s)	796, 925
Fnu4HI	GCNGC	4 cut(s)	193, 848, 869, 888
FokI	GGATG	4 cut(s)	32, 121, 379, 642
Fsp4HI	GCNGC	4 cut(s)	193, 848, 869, 888
FspBI	CTAG	1 cut(s)	999
GlaI	GCGC	2 cut(s)	512, 575
GluI	GCNGC	4 cut(s)	193, 848, 869, 888
HaeII	RGCGCY	1 cut(s)	514
HapII	CCGG	1 cut(s)	1035
HhaI	GCGC	2 cut(s)	513, 576
Hin1II	CATG	8 cut(s)	462, 494, 551, 567, 651, 977, 998, 1013
Hin6I	GCGC	2 cut(s)	511, 574
HinP1I	GCGC	2 cut(s)	511, 574
HincII	GTYRAC	2 cut(s)	345, 482
HindII	GTYRAC	2 cut(s)	345, 482
HindIII	AAGCTT	1 cut(s)	656
HpaII	CCGG	1 cut(s)	1035
HphI	GGTGA	3 cut(s)	43, 506, 892
Hpy166II	GTNNAC	3 cut(s)	345, 427, 482
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	3 cut(s)	759, 904, 974
Hpy8I	GTNNAC	3 cut(s)	345, 427, 482
HpyAV	CCTTC	1 cut(s)	433
HpyCH4IV	ACGT	2 cut(s)	7, 751
HpyCH4V	TGCA	8 cut(s)	336, 370, 735, 749, 838, 850, 868, 887
HpyF10VI	GCNNNNNNNGC	5 cut(s)	333, 553, 573, 580, 844
HpyF3I	CTNAG	2 cut(s)	984, 1064
HpySE526I	ACGT	2 cut(s)	7, 751
Hsp92II	CATG	8 cut(s)	462, 494, 551, 567, 651, 977, 998, 1013
HspAI	GCGC	2 cut(s)	511, 574
Ksp22I	TGATCA	2 cut(s)	796, 925
Kzo9I	GATC	6 cut(s)	448, 796, 822, 858, 925, 980
LmnI	GCTCC	1 cut(s)	553
Lsp1109I	GCAGC	4 cut(s)	179, 834, 880, 899
LweI	GCATC	2 cut(s)	357, 851
MaeI	CTAG	1 cut(s)	999
MaeII	ACGT	2 cut(s)	7, 751
MaeIII	GTNAC	2 cut(s)	504, 643
MalI	GATC	6 cut(s)	450, 798, 824, 860, 927, 982
MboI	GATC	6 cut(s)	448, 796, 822, 858, 925, 980
MboII	GAAGA	1 cut(s)	169
MfeI	CAATTG	1 cut(s)	361
MflI	RGATCY	2 cut(s)	448, 980
MluCI	AATT	9 cut(s)	23, 34, 82, 155, 361, 411, 827, 831, 954
MnlI	CCTC	3 cut(s)	429, 607, 1041
Mph1103I	ATGCAT	1 cut(s)	372
MroXI	GAANNNNTTC	1 cut(s)	684
MslI	CAYNNNNRTG	2 cut(s)	375, 945
MspI	CCGG	1 cut(s)	1035
MunI	CAATTG	1 cut(s)	361
MwoI	GCNNNNNNNGC	5 cut(s)	333, 553, 573, 580, 844
NcoI	CCATGG	1 cut(s)	1009
NdeII	GATC	6 cut(s)	448, 796, 822, 858, 925, 980
NlaIII	CATG	8 cut(s)	462, 494, 551, 567, 651, 977, 998, 1013
NlaIV	GGNNCC	2 cut(s)	43, 55
NmuCI	GTSAC	1 cut(s)	504
NsiI	ATGCAT	1 cut(s)	372
NspI	RCATGY	4 cut(s)	462, 551, 567, 651
PaeI	GCATGC	1 cut(s)	567
PagI	TCATGA	1 cut(s)	973
PciI	ACATGT	1 cut(s)	458
PdmI	GAANNNNTTC	1 cut(s)	684
PkrI	GCNGC	4 cut(s)	194, 849, 870, 889
PmaCI	CACGTG	1 cut(s)	752
PmlI	CACGTG	1 cut(s)	752
Ppu21I	YACGTR	1 cut(s)	752
PscI	ACATGT	1 cut(s)	458
PshBI	ATTAAT	1 cut(s)	830
PsiI	TTATAA	1 cut(s)	87
PspCI	CACGTG	1 cut(s)	752
PspN4I	GGNNCC	2 cut(s)	43, 55
PspPI	GGNCC	1 cut(s)	1006
PsrI	GAACNNNNNNTAC	1 cut(s)	29
PsuI	RGATCY	2 cut(s)	448, 980
RsaI	GTAC	3 cut(s)	15, 672, 966
RsaNI	GTAC	3 cut(s)	14, 671, 965
RseI	CAYNNNNRTG	2 cut(s)	375, 945
SatI	GCNGC	4 cut(s)	193, 848, 869, 888
Sau3AI	GATC	6 cut(s)	448, 796, 822, 858, 925, 980
Sau96I	GGNCC	1 cut(s)	1006
SfaNI	GCATC	2 cut(s)	357, 851
SinI	GGWCC	1 cut(s)	1006
SmiMI	CAYNNNNRTG	2 cut(s)	375, 945
SphI	GCATGC	1 cut(s)	567
Sse9I	AATT	9 cut(s)	23, 34, 82, 155, 361, 411, 827, 831, 954
SsiI	CCGC	1 cut(s)	627
SspI	AATATT	1 cut(s)	126
SspMI	CTAG	1 cut(s)	999
StyI	CCWWGG	1 cut(s)	1009
TaiI	ACGT	2 cut(s)	10, 754
TaqI	TCGA	1 cut(s)	697
TasI	AATT	9 cut(s)	23, 34, 82, 155, 361, 411, 827, 831, 954
TatI	WGTACW	1 cut(s)	670
TseFI	GTSAC	1 cut(s)	504
TseI	GCWGC	4 cut(s)	192, 847, 868, 887
Tsp45I	GTSAC	1 cut(s)	504
TspDTI	ATGAA	3 cut(s)	36, 780, 962
VpaK11BI	GGWCC	1 cut(s)	1006
VspI	ATTAAT	1 cut(s)	830
XapI	RAATTY	3 cut(s)	23, 34, 155
XceI	RCATGY	4 cut(s)	462, 551, 567, 651
XmnI	GAANNNNTTC	1 cut(s)	684
XspI	CTAG	1 cut(s)	999
Zsp2I	ATGCAT	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.