RchiOBHm_Chr4g0440781

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0006605
Physical Location & Seq
Forward (+)
62771808 .. 62774777
2970 bp
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UTR
Exon/CDS
Intron
PRQ40872

Sequence Viewer

Length: 1212 bp
ATGGAAGAGAATGAAGAAGGCAGGGTAAAAAACGAAGAAGAAGAAGAAGAGCAACAAGTATGGAGTTGGGGGGCAGGAACGGACGGGCAGCTGGGCACGGGCAGGCTACAGGATGATCTCCTCCCTCAGTTGCTTCGTCTACCTTCTCTCTCCGCCGTGGGACCTATCTCTCTCCTCGCCTGCGGCGGCGCTCACGTTCTCGCCTTAACATCAGGTGGGAAGGTGCTGACATGGGGAAGAGGCACATCTGGTCAGCTTGGTCATTCTGATAGGGTTAATAGCCCACATCCCAAGCTTGTAATGTCTTTGGACACCTACTTCATTACGCATGCTTCTGCTGGCTGGAACCACTCGGGTTTCGTTTCAGATGCGGGGGACGTTTTCACATGTGGAGATGGCTCATTTGGTCAGCTCGGGCATGGTGATTATAGTTTACATTGCAGTCCTGTCAAAGTCTCTTTCTTTGATGACCATTGTGTTGAGCAGATAGCATGTGGTATGCGCCATTCTCTTGTTTTGCTGAAAGGTGATGAAGTATACGGGTTTGGCTCCGGGAAGCGTGGTCAACTTGGTATCTCCAAGGATAAGATCAAGTCAATTAGTCTTCCTGAACGAATTTATGGACTTGAAGCTGTAAAAGTTACTAGCATCATTGCAAATGGAGATCAAAGTGCAGCATTATCTGCTGATGGGCATATGTACACTTGGGGAAAAGGGTTTGGTGGCACTTCAAGTGCTCACTCCCCACAGTCTTTACCTAAATCGTTATGGTTTACCAAAGCTGCTGTTGGATGGAATCATGCTTTATTATTAACTGCTGGTGGAGAAGTTTTCATGCTCGGTGGAAATCACCATGGAGTCCTTGGTAATCCTGACAAAATGACTCCAGCCAGGCTCTTAGCAGATTCAGGAGAAGCTATCCTGGATAAAGTCCCTGGTCTTGAAGAGAATAGGATCATGGACATTGCAGCCGGGGCTGAGCACTCTGTTATTGTCACAGGCACTAATACGTTATCTCTATTACTATCTTTTACATGGGGCTGGGGTGAACATGGTCAGCTTGGCTTGGGAAATACATGCGATCAAACAACTCCTCAAGAAGTGAGTCTCGGACACAAATCTCGGAAAGAAGCTGCTGCAATCAAGATTTACTGTGGTAGTGGGTTCACAATGGCTGTAAGAACACCGCATCTTCCTTCTCAGACTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
RCC1 RRM_1

Protein Analysis

403

Amino Acids

42.71

Weight (kDa)

5.73

Isoelectric Point (pI)

29.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 19 - 392 3.6e-79 RCC1-like domain
RCC1 PF00415 19 - 69 2.8e-10 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 58 - 85 1.2e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 73 - 120 2.6e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 125 - 173 2.2e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 160 - 189 3.1e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 178 - 227 3.6e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 344 - 393 9e-12 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 139, 537
AciI CCGC 5 cut(s) 153, 183, 186, 371, 1187
AclWI GGATC 1 cut(s) 962
AcsI RAATTY 1 cut(s) 615
AfaI GTAC 1 cut(s) 701
AflIII ACRYGT 1 cut(s) 386
AgsI TTSAA 3 cut(s) 629, 732, 944
AjnI CCWGG 3 cut(s) 890, 921, 934
AluBI AGCT 9 cut(s) 91, 256, 295, 412, 632, 782, 917, 1060, 1133
AluI AGCT 9 cut(s) 91, 256, 295, 412, 632, 782, 917, 1060, 1133
Alw21I GWGCWC 2 cut(s) 739, 984
Alw26I GTCTC 2 cut(s) 460, 1112
AlwI GGATC 1 cut(s) 962
Ama87I CYCGRG 2 cut(s) 352, 413
ApeKI GCWGC 6 cut(s) 88, 674, 782, 968, 1133, 1136
ApoI RAATTY 1 cut(s) 615
AspLEI GCGC 2 cut(s) 191, 504
AspS9I GGNCC 1 cut(s) 161
AsuC2I CCSGG 2 cut(s) 553, 973
AsuHPI GGTGA 4 cut(s) 434, 539, 842, 1058
AvaI CYCGRG 2 cut(s) 352, 413
AvaII GGWCC 1 cut(s) 161
BaeGI GKGCMC 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 596
Bbv12I GWGCWC 2 cut(s) 739, 984
BbvI GCAGC 6 cut(s) 100, 686, 769, 980, 1120, 1123
BccI CCATC 3 cut(s) 389, 683, 786
BceAI ACGGC 1 cut(s) 140
BciT130I CCWGG 3 cut(s) 892, 923, 936
BcnI CCSGG 2 cut(s) 553, 973
BcoDI GTCTC 2 cut(s) 460, 1112
BfaI CTAG 1 cut(s) 645
BfmI CTRYAG 1 cut(s) 107
BfoI RGCGCY 1 cut(s) 192
BisI GCNGC 8 cut(s) 89, 184, 187, 675, 783, 969, 1134, 1137
BlpI GCTNAGC 1 cut(s) 978
BlsI GCNGC 8 cut(s) 90, 185, 188, 676, 784, 970, 1135, 1138
Bme1390I CCNGG 5 cut(s) 553, 892, 923, 936, 973
Bme18I GGWCC 1 cut(s) 161
BmeT110I CYCGRG 2 cut(s) 352, 413
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 3 cut(s) 162, 347, 550
BmrFI CCNGG 5 cut(s) 553, 892, 923, 936, 973
BmsI GCATC 3 cut(s) 358, 657, 1198
BpiI GAAGAC 1 cut(s) 596
BpmI CTGGAG 1 cut(s) 870
Bpu1102I GCTNAGC 1 cut(s) 978
BpuEI CTTGAG 1 cut(s) 1080
BpuMI CCSGG 2 cut(s) 553, 973
BsaJI CCNNGG 6 cut(s) 156, 579, 853, 862, 934, 972
Bse3DI GCAATG 3 cut(s) 436, 651, 963
BseBI CCWGG 3 cut(s) 892, 923, 936
BseDI CCNNGG 6 cut(s) 156, 579, 853, 862, 934, 972
BseGI GGATG 3 cut(s) 118, 286, 797
BseMI GCAATG 3 cut(s) 436, 651, 963
BseMII CTCAG 2 cut(s) 140, 969
BseRI GAGGAG 3 cut(s) 110, 164, 1083
BseSI GKGCMC 1 cut(s) 98
BseXI GCAGC 6 cut(s) 100, 686, 769, 980, 1120, 1123
BseYI CCCAGC 2 cut(s) 91, 1041
BsgI GTGCAG 1 cut(s) 693
BsiHKAI GWGCWC 2 cut(s) 739, 984
BsiHKCI CYCGRG 2 cut(s) 352, 413
BsiSI CCGG 2 cut(s) 552, 972
BslFI GGGAC 3 cut(s) 174, 389, 917
BsmAI GTCTC 2 cut(s) 460, 1112
BsmFI GGGAC 3 cut(s) 174, 389, 917
BsoBI CYCGRG 2 cut(s) 352, 413
Bsp1286I GDGCHC 3 cut(s) 98, 739, 984
Bsp1407I TGTACA 1 cut(s) 699
Bsp143I GATC 5 cut(s) 115, 588, 664, 954, 1081
Bsp1720I GCTNAGC 1 cut(s) 978
Bsp19I CCATGG 1 cut(s) 853
BspACI CCGC 5 cut(s) 153, 183, 186, 371, 1187
BspCNI CTCAG 2 cut(s) 139, 970
BspLI GGNNCC 3 cut(s) 162, 347, 550
BspPI GGATC 1 cut(s) 962
BspQI GCTCTTC 1 cut(s) 42
BsrDI GCAATG 3 cut(s) 436, 651, 963
BsrGI TGTACA 1 cut(s) 699
BssECI CCNNGG 6 cut(s) 156, 579, 853, 862, 934, 972
BssMI GATC 5 cut(s) 115, 588, 664, 954, 1081
BssNAI GTATAC 1 cut(s) 538
BssT1I CCWWGG 3 cut(s) 579, 853, 862
Bst1107I GTATAC 1 cut(s) 538
Bst2UI CCWGG 3 cut(s) 892, 923, 936
Bst4CI ACNGT 2 cut(s) 750, 1154
Bst6I CTCTTC 3 cut(s) 42, 232, 939
BstAPI GCANNNNNTGC 1 cut(s) 683
BstAUI TGTACA 1 cut(s) 699
BstC8I GCNNGC 4 cut(s) 104, 181, 330, 340
BstDEI CTNAG 4 cut(s) 126, 898, 978, 1200
BstDSI CCRYGG 2 cut(s) 156, 853
BstF5I GGATG 3 cut(s) 118, 286, 797
BstH2I RGCGCY 1 cut(s) 192
BstHHI GCGC 2 cut(s) 191, 504
BstKTI GATC 5 cut(s) 118, 591, 667, 957, 1084
BstMAI GTCTC 2 cut(s) 460, 1112
BstMBI GATC 5 cut(s) 115, 588, 664, 954, 1081
BstMWI GCNNNNNNNGC 2 cut(s) 683, 974
BstNI CCWGG 3 cut(s) 892, 923, 936
BstNSI RCATGY 4 cut(s) 332, 390, 495, 1080
BstSCI CCNGG 5 cut(s) 551, 890, 921, 934, 971
BstSFI CTRYAG 1 cut(s) 107
BstSLI GKGCMC 1 cut(s) 98
BstV1I GCAGC 6 cut(s) 100, 686, 769, 980, 1120, 1123
BstV2I GAAGAC 1 cut(s) 596
BstZ17I GTATAC 1 cut(s) 538
BtgI CCRYGG 2 cut(s) 156, 853
BtsCI GGATG 3 cut(s) 118, 286, 797
Cac8I GCNNGC 4 cut(s) 104, 181, 330, 340
CfoI GCGC 2 cut(s) 191, 504
Cfr13I GGNCC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 700
CviQI GTAC 1 cut(s) 700
DdeI CTNAG 4 cut(s) 126, 898, 978, 1200
DpnI GATC 5 cut(s) 117, 590, 666, 956, 1083
DpnII GATC 5 cut(s) 115, 588, 664, 954, 1081
Eam1104I CTCTTC 3 cut(s) 42, 232, 939
EarI CTCTTC 3 cut(s) 42, 232, 939
EciI GGCGGA 1 cut(s) 142
Eco130I CCWWGG 3 cut(s) 579, 853, 862
Eco47I GGWCC 1 cut(s) 161
Eco88I CYCGRG 2 cut(s) 352, 413
EcoO109I RGGNCCY 1 cut(s) 161
EcoRII CCWGG 3 cut(s) 890, 921, 934
EcoT14I CCWWGG 3 cut(s) 579, 853, 862
ErhI CCWWGG 3 cut(s) 579, 853, 862
FaqI GGGAC 3 cut(s) 174, 389, 917
FauI CCCGC 1 cut(s) 364
FauNDI CATATG 1 cut(s) 696
FblI GTMKAC 2 cut(s) 139, 537
Fnu4HI GCNGC 8 cut(s) 89, 184, 187, 675, 783, 969, 1134, 1137
FokI GGATG 3 cut(s) 125, 273, 804
Fsp4HI GCNGC 8 cut(s) 89, 184, 187, 675, 783, 969, 1134, 1137
FspBI CTAG 1 cut(s) 645
GlaI GCGC 2 cut(s) 190, 503
GluI GCNGC 8 cut(s) 89, 184, 187, 675, 783, 969, 1134, 1137
GsaI CCCAGC 2 cut(s) 95, 1045
GsuI CTGGAG 1 cut(s) 870
HaeII RGCGCY 1 cut(s) 192
HapII CCGG 2 cut(s) 552, 972
HhaI GCGC 2 cut(s) 191, 504
Hin6I GCGC 2 cut(s) 189, 502
HinP1I GCGC 2 cut(s) 189, 502
HincII GTYRAC 1 cut(s) 566
HindII GTYRAC 1 cut(s) 566
HindIII AAGCTT 1 cut(s) 293
HinfI GANTC 5 cut(s) 796, 858, 883, 905, 1105
HpaII CCGG 2 cut(s) 552, 972
HphI GGTGA 4 cut(s) 434, 539, 842, 1058
Hpy166II GTNNAC 8 cut(s) 140, 434, 538, 566, 702, 774, 1049, 1167
Hpy188I TCNGA 5 cut(s) 268, 367, 1112, 1125, 1203
Hpy188III TCNNGA 6 cut(s) 608, 872, 909, 941, 1097, 1144
Hpy8I GTNNAC 8 cut(s) 140, 434, 538, 566, 702, 774, 1049, 1167
HpyAV CCTTC 4 cut(s) 11, 153, 214, 1206
HpyCH4III ACNGT 2 cut(s) 750, 1154
HpyCH4IV ACGT 3 cut(s) 195, 378, 1010
HpyCH4V TGCA 5 cut(s) 441, 656, 674, 968, 1139
HpyF10VI GCNNNNNNNGC 2 cut(s) 683, 974
HpyF3I CTNAG 4 cut(s) 126, 898, 978, 1200
HpySE526I ACGT 3 cut(s) 195, 378, 1010
HspAI GCGC 2 cut(s) 189, 502
Kzo9I GATC 5 cut(s) 115, 588, 664, 954, 1081
LguI GCTCTTC 1 cut(s) 42
LmnI GCTCC 1 cut(s) 554
Lsp1109I GCAGC 6 cut(s) 100, 686, 769, 980, 1120, 1123
LweI GCATC 3 cut(s) 358, 657, 1198
MaeI CTAG 1 cut(s) 645
MaeII ACGT 3 cut(s) 195, 378, 1010
MaeIII GTNAC 2 cut(s) 640, 994
MalI GATC 5 cut(s) 117, 590, 666, 956, 1083
MboI GATC 5 cut(s) 115, 588, 664, 954, 1081
MhlI GDGCHC 3 cut(s) 98, 739, 984
MluCI AATT 2 cut(s) 597, 615
MlyI GAGTC 3 cut(s) 867, 877, 1114
MmeI TCCRAC 1 cut(s) 769
MnlI CCTC 5 cut(s) 131, 135, 185, 233, 1104
MseI TTAA 3 cut(s) 206, 276, 812
MspA1I CMGCKG 1 cut(s) 91
MspI CCGG 2 cut(s) 552, 972
MspR9I CCNGG 5 cut(s) 553, 892, 923, 936, 973
MvaI CCWGG 3 cut(s) 892, 923, 936
MwoI GCNNNNNNNGC 2 cut(s) 683, 974
NciI CCSGG 2 cut(s) 553, 973
NcoI CCATGG 1 cut(s) 853
NdeI CATATG 1 cut(s) 696
NdeII GATC 5 cut(s) 115, 588, 664, 954, 1081
NlaIV GGNNCC 3 cut(s) 162, 347, 550
NmuCI GTSAC 1 cut(s) 994
NspI RCATGY 4 cut(s) 332, 390, 495, 1080
PaeI GCATGC 1 cut(s) 332
PciI ACATGT 1 cut(s) 386
PciSI GCTCTTC 1 cut(s) 42
PfeI GAWTC 2 cut(s) 796, 905
PfoI TCCNGGA 2 cut(s) 551, 921
PkrI GCNGC 8 cut(s) 90, 185, 188, 676, 784, 970, 1135, 1138
PleI GAGTC 3 cut(s) 866, 877, 1113
PpsI GAGTC 3 cut(s) 866, 877, 1113
PpuMI RGGWCCY 1 cut(s) 161
PscI ACATGT 1 cut(s) 386
Psp5II RGGWCCY 1 cut(s) 161
Psp6I CCWGG 3 cut(s) 890, 921, 934
PspFI CCCAGC 2 cut(s) 91, 1041
PspGI CCWGG 3 cut(s) 890, 921, 934
PspN4I GGNNCC 3 cut(s) 162, 347, 550
PspPI GGNCC 1 cut(s) 161
PspPPI RGGWCCY 1 cut(s) 161
PvuII CAGCTG 1 cut(s) 91
RsaI GTAC 1 cut(s) 701
RsaNI GTAC 1 cut(s) 700
SapI GCTCTTC 1 cut(s) 42
SaqAI TTAA 3 cut(s) 206, 276, 812
SatI GCNGC 8 cut(s) 89, 184, 187, 675, 783, 969, 1134, 1137
Sau3AI GATC 5 cut(s) 115, 588, 664, 954, 1081
Sau96I GGNCC 1 cut(s) 161
SchI GAGTC 3 cut(s) 867, 877, 1114
ScrFI CCNGG 5 cut(s) 553, 892, 923, 936, 973
SduI GDGCHC 3 cut(s) 98, 739, 984
SfaNI GCATC 3 cut(s) 358, 657, 1198
SfcI CTRYAG 1 cut(s) 107
SinI GGWCC 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 1095
SmoI CTYRAG 1 cut(s) 1095
SphI GCATGC 1 cut(s) 332
Sse9I AATT 2 cut(s) 597, 615
SsiI CCGC 5 cut(s) 153, 183, 186, 371, 1187
SspMI CTAG 1 cut(s) 645
StyD4I CCNGG 5 cut(s) 551, 890, 921, 934, 971
StyI CCWWGG 3 cut(s) 579, 853, 862
TaaI ACNGT 2 cut(s) 750, 1154
TaiI ACGT 3 cut(s) 198, 381, 1013
TasI AATT 2 cut(s) 597, 615
TatI WGTACW 1 cut(s) 699
TauI GCSGC 2 cut(s) 186, 189
TfiI GAWTC 2 cut(s) 796, 905
Tru1I TTAA 3 cut(s) 206, 276, 812
Tru9I TTAA 3 cut(s) 206, 276, 812
TseFI GTSAC 1 cut(s) 994
TseI GCWGC 6 cut(s) 88, 674, 782, 968, 1133, 1136
Tsp45I GTSAC 1 cut(s) 994
TspDTI ATGAA 4 cut(s) 27, 310, 546, 823
TspGWI ACGGA 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 161
XapI RAATTY 1 cut(s) 615
XceI RCATGY 4 cut(s) 332, 390, 495, 1080
XcmI CCANNNNNNNNNTGG 1 cut(s) 860
XmiI GTMKAC 2 cut(s) 139, 537
XspI CTAG 1 cut(s) 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.