Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0007960

Physical Location & Seq

Genomic Coordinates Reverse (-)

65384344 .. 65387850

Gene Structure 3507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG407500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1566 bp

ATGCTCGCCTTCACCCACTTCCATCTAGTCCCCGGTTTTTTTCCTCCGGTCACCAATTCGGCCGCCGGAATGAGGCGGGGACGTGTTCTTGAGCCGGCGAGGCTTAGGGTGGTGGGAGAAAGCAGAAGCAGGGTTTCTGTTGTTCTAGGGTTTTGGGAGGGGAGGAAAGAAGGGGGTTGTGGGTTTGTGAGGCGGTGTAGGGATTCGGATTTGGAAGGGGATTTTGCCCTGGAAGCTGAGATTTTGGAGTTCATGAAGGCCTCGGACAAGCCTCGGGCTTTTCCGAGCAAGAGGGACTTGGTGGAGGCTGGGAGGTTGGATTTGGTCGACGCCATTGTGAGGGAAGGTGGTTGGCTTTCGCTGGGTTGGGATTTGGGGGATGAAGAAACAGCTCAAGATAGTGGCTTTAGGAATTGGGATGAAGGATATGAGACCAGTGATTCCGATATGGTTTCTGATTCTTCTTCTTCTTCTGTAGTAGCGTCGTCGTCTGGTACATCACTAGAAGCTGCAACAACTGAGGTTGATACTGGAATCGAGGGTATATTGAACCGATTAGAGAAACAGAGAAATTTGACCCTTGGGTTTGTTTTGAGAGATAAAGAAGACAGTACTGGCCTCGCAAATAATGATAACAAACATGATCGGTGCCCTGAAACCTCAACTGATGCGACAGTTGGCGCAACAAGCAGAAGTATCAGACCTGCTTCATCAAACCCCACTAAAGCCATTCTTAGTGATTTGGGAGGCCCACATAATCATAGCAGATCTCTTTTAGATGCTGACGTTCAGAGAAACTCACCAAAGCCTGAAATGTGGAGAACTTGGAGCAGCCAAAGGGCTGGATCTTCAGATCTGGAATTTGAAGCTGGTGAAGTTTCTTATGATGAAATGGGAGGATCAAAGGGAGTTTTGCAAAATGAAATACTTCAAACGAAAGAGGGTGCTAATGAACCGAATGATCTAGATTCTGAGGATGAAGTGATCGATTACAAACAAGTACGAATTCGCATGCAGCACCTTGAATCCGAGCTCTCCTCTGTACTTCACTCATTGAGGTCTAAAACTAGTAATGTTGCACCAAAGGAGATGGGGATGATTACTCCTGGTCATGAAAGCTCCCCTGATGATTTGTGGGAAGTCTCTGATGCTTGGGAGTTTCAAGAAAATGAAATTATGCATGCGCAGAACAAATTACGTTCAACACGTGCAAAGCTTGCTGTTTTAGAAGGAAAGATGGCGATGGCAATAATTGATGCGCAAAAGAAAGTGGAGGAGAAACAGAAGAGGGTTAATGATGCTCGTAGAGCCTTACGGCTTCTCCGAACTGCTTTAATAGTTTGGACCAATCCAGCCTCAGAAGTGATTTTAGCAGGATCATATGATGGTTGGGCTACCCAGAGAAAGATGGGGAGGTCGAGTACAGGAATCTTCTCTGTTAGCCTTAAGTTGTATCCGGGTAGATATGAGATCAAATTCATTGTTGATGGGGAATGGCGAATTGATCCCCTACGCCCTATTGTTCGCAACAACGGATTTGAAAATAATATACTGATTATAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001871 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0006109 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010556 GO:0010581 GO:0010675 GO:0010962 GO:0016051 GO:0019222 GO:0019252 GO:0030246 GO:0030247 GO:0031323 GO:0031326 GO:0032881 GO:0032885 GO:0033692 GO:0034637 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0060255 GO:0065007 GO:0070492 GO:0071704 GO:0080050 GO:0080090 GO:0097367 GO:1901576 GO:2000014 GO:2000026 GO:2000112 GO:2000241 GO:2000904 GO:2001066 GO:2001070 GO:2001071

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM

Protein Analysis

521

Amino Acids

57.85

Weight (kDa)

5.25

Isoelectric Point (pI)

49.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMPK1_CBM	PF16561	445 - 520	7.6e-17	Glycogen recognition site of AMP-activated protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27070
fragaria_vesca	FvH4_4g32100 FvH4_4g32100 FvH4_4g32100 FvH4_4g32100 FvH4_4g32100
malus_domestica	MD13G1079900.v1.1 MD16G1079800.v1.1
prunus_persica	Prupe.1G266900_v2.0.a1
pyrus_communis	pycom13g06940 pycom16g06890
rosa_chinensis	RchiOBHm_Chr4g0440791
rosa_laevigata	RLG00000006153
rosa_multiflora	Rmu_sc0000424.1_g000007 Rmu_sc0000780.1_g000019 Rmu_sc0022158.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381550
rosa_rugosa	Rorug04G0327900 Rorug04G0328000
rosa_samantha	Rh4AG379800 Rh4BG392700 Rh4CG407500 Rh4DG386500
rosa_wichuraiana	Rw4G032700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1559
Acc16I	TGCGCA	2 cut(s)	1185, 1260
Acc36I	ACCTGC	1 cut(s)	712
AccB1I	GGYRCC	1 cut(s)	648
AccI	GTMKAC	1 cut(s)	327
AciI	CCGC	3 cut(s)	63, 76, 193
AclWI	GGATC	4 cut(s)	853, 907, 1384, 1499
AcoI	YGGCCR	1 cut(s)	60
AcsI	RAATTY	4 cut(s)	571, 860, 1005, 1475
AcuI	CTGAAG	1 cut(s)	834
AcvI	CACGTG	1 cut(s)	1208
AcyI	GRCGYC	1 cut(s)	330
AfaI	GTAC	5 cut(s)	496, 613, 1002, 1044, 1423
AfiI	CCNNNNNNNGG	2 cut(s)	72, 339
AflII	CTTAAG	1 cut(s)	1445
AflIII	ACRYGT	2 cut(s)	82, 1205
AgsI	TTSAA	7 cut(s)	550, 866, 932, 1025, 1163, 1203, 1541
AhlI	ACTAGT	1 cut(s)	1067
AjiI	CACGTC	1 cut(s)	83
AjnI	CCWGG	2 cut(s)	228, 1105
AluBI	AGCT	7 cut(s)	236, 392, 509, 869, 1033, 1119, 1216
AluI	AGCT	7 cut(s)	236, 392, 509, 869, 1033, 1119, 1216
Alw21I	GWGCWC	1 cut(s)	1035
Alw26I	GTCTC	2 cut(s)	425, 1147
AlwI	GGATC	4 cut(s)	853, 907, 1384, 1499
Ama87I	CYCGRG	1 cut(s)	273
AoxI	GGCC	4 cut(s)	60, 258, 616, 748
ApeKI	GCWGC	3 cut(s)	509, 831, 1015
ApoI	RAATTY	4 cut(s)	571, 860, 1005, 1475
Asp700I	GAANNNNTTC	1 cut(s)	927
AspLEI	GCGC	3 cut(s)	683, 1186, 1261
AspS9I	GGNCC	2 cut(s)	749, 1344
AsuC2I	CCSGG	2 cut(s)	33, 1458
AsuHPI	GGTGA	4 cut(s)	4, 43, 792, 884
AvaI	CYCGRG	1 cut(s)	273
AvaII	GGWCC	1 cut(s)	1344
BaeGI	GKGCMC	1 cut(s)	653
BanI	GGYRCC	1 cut(s)	648
BanII	GRGCYC	1 cut(s)	1035
BbrPI	CACGTG	1 cut(s)	1208
BbsI	GAAGAC	1 cut(s)	612
Bbv12I	GWGCWC	1 cut(s)	1035
BbvI	GCAGC	3 cut(s)	496, 843, 1027
BccI	CCATC	7 cut(s)	30, 1084, 1231, 1237, 1379, 1402, 1481
BceAI	ACGGC	1 cut(s)	1331
BciT130I	CCWGG	2 cut(s)	230, 1107
BciVI	GTATCC	1 cut(s)	1464
BcnI	CCSGG	2 cut(s)	33, 1458
BcoDI	GTCTC	2 cut(s)	425, 1147
BcuI	ACTAGT	1 cut(s)	1067
BfaI	CTAG	5 cut(s)	26, 146, 503, 965, 1068
BfmI	CTRYAG	1 cut(s)	474
BfrI	CTTAAG	1 cut(s)	1445
BfuAI	ACCTGC	1 cut(s)	712
BfuI	GTATCC	1 cut(s)	1464
BglI	GCCNNNNNGGC	1 cut(s)	100
BglII	AGATCT	2 cut(s)	767, 853
BisI	GCNGC	4 cut(s)	63, 510, 832, 1016
BlsI	GCNGC	4 cut(s)	64, 511, 833, 1017
BmcAI	AGTACT	1 cut(s)	613
Bme1390I	CCNGG	4 cut(s)	33, 230, 1107, 1458
Bme18I	GGWCC	1 cut(s)	1344
BmeT110I	CYCGRG	1 cut(s)	273
BmgBI	CACGTC	1 cut(s)	83
BmgT120I	GGNCC	2 cut(s)	749, 1344
BmiI	GGNNCC	1 cut(s)	650
BmrFI	CCNGG	4 cut(s)	33, 230, 1107, 1458
BmsI	GCATC	5 cut(s)	658, 769, 1138, 1246, 1288
BpiI	GAAGAC	1 cut(s)	612
BplI	GAGNNNNNCTC	2 cut(s)	1022, 1054
Bpu10I	CCTNAGC	1 cut(s)	104
BpuEI	CTTGAG	2 cut(s)	110, 378
BpuMI	CCSGG	2 cut(s)	33, 1458
Bsa29I	ATCGAT	1 cut(s)	987
BsaAI	YACGTR	1 cut(s)	1208
BsaHI	GRCGYC	1 cut(s)	330
BsaI	GGTCTC	1 cut(s)	425
BsaJI	CCNNGG	5 cut(s)	31, 228, 261, 272, 580
BsaWI	WCCGGW	1 cut(s)	46
BsaXI	ACNNNNNCTCC	4 cut(s)	1305, 1335, 1405, 1435
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 339
Bse118I	RCCGGY	1 cut(s)	94
Bse1I	ACTGG	3 cut(s)	435, 535, 619
BseBI	CCWGG	2 cut(s)	230, 1107
BseCI	ATCGAT	1 cut(s)	987
BseDI	CCNNGG	5 cut(s)	31, 228, 261, 272, 580
BseGI	GGATG	4 cut(s)	385, 424, 982, 1101
BseLI	CCNNNNNNNGG	2 cut(s)	72, 339
BseMII	CTCAG	4 cut(s)	228, 510, 963, 1371
BseNI	ACTGG	3 cut(s)	435, 535, 619
BseRI	GAGGAG	2 cut(s)	1027, 1289
BseSI	GKGCMC	1 cut(s)	653
BseX3I	CGGCCG	1 cut(s)	60
BseXI	GCAGC	3 cut(s)	496, 843, 1027
BseYI	CCCAGC	2 cut(s)	308, 361
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	4 cut(s)	62, 260, 618, 750
BshNI	GGYRCC	1 cut(s)	648
BshVI	ATCGAT	1 cut(s)	987
BsiEI	CGRYCG	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	1035
BsiHKCI	CYCGRG	1 cut(s)	273
BsiSI	CCGG	5 cut(s)	33, 47, 66, 95, 1457
BslFI	GGGAC	3 cut(s)	14, 93, 308
BslI	CCNNNNNNNGG	2 cut(s)	72, 339
BsmAI	GTCTC	2 cut(s)	425, 1147
BsmFI	GGGAC	3 cut(s)	14, 93, 308
BsnI	GGCC	4 cut(s)	62, 260, 618, 750
Bso31I	GGTCTC	1 cut(s)	425
BsoBI	CYCGRG	1 cut(s)	273
Bsp1286I	GDGCHC	2 cut(s)	653, 1035
BspACI	CCGC	3 cut(s)	63, 76, 193
BspANI	GGCC	4 cut(s)	62, 260, 618, 750
BspCNI	CTCAG	4 cut(s)	229, 511, 964, 1370
BspDI	ATCGAT	1 cut(s)	987
BspHI	TCATGA	2 cut(s)	252, 1111
BspLI	GGNNCC	1 cut(s)	650
BspMI	ACCTGC	1 cut(s)	712
BspPI	GGATC	4 cut(s)	853, 907, 1384, 1499
BspT107I	GGYRCC	1 cut(s)	648
BspTI	CTTAAG	1 cut(s)	1445
BspTNI	GGTCTC	1 cut(s)	425
BsrFI	RCCGGY	1 cut(s)	94
BsrI	ACTGG	3 cut(s)	435, 535, 619
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	5 cut(s)	31, 228, 261, 272, 580
BssNI	GRCGYC	1 cut(s)	330
BssT1I	CCWWGG	1 cut(s)	580
Bst2UI	CCWGG	2 cut(s)	230, 1107
Bst4CI	ACNGT	2 cut(s)	611, 676
Bst6I	CTCTTC	1 cut(s)	1280
BstACI	GRCGYC	1 cut(s)	330
BstAFI	CTTAAG	1 cut(s)	1445
BstAPI	GCANNNNNTGC	1 cut(s)	1217
BstBAI	YACGTR	1 cut(s)	1208
BstC8I	GCNNGC	5 cut(s)	6, 96, 1013, 1182, 1218
BstDEI	CTNAG	6 cut(s)	104, 237, 519, 734, 972, 1357
BstEII	GGTNACC	1 cut(s)	49
BstF5I	GGATG	4 cut(s)	385, 424, 982, 1101
BstHHI	GCGC	3 cut(s)	683, 1186, 1261
BstMAI	GTCTC	2 cut(s)	425, 1147
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	5 cut(s)	100, 233, 687, 1217, 1307
BstNI	CCWGG	2 cut(s)	230, 1107
BstNSI	RCATGY	2 cut(s)	1015, 1184
BstPI	GGTNACC	1 cut(s)	49
BstSCI	CCNGG	4 cut(s)	31, 228, 1105, 1456
BstSFI	CTRYAG	1 cut(s)	474
BstSLI	GKGCMC	1 cut(s)	653
BstV1I	GCAGC	3 cut(s)	496, 843, 1027
BstV2I	GAAGAC	1 cut(s)	612
BstX2I	RGATCY	3 cut(s)	767, 845, 853
BstXI	CCANNNNNNTGG	1 cut(s)	842
BstYI	RGATCY	3 cut(s)	767, 845, 853
BstZI	CGGCCG	1 cut(s)	60
Bsu15I	ATCGAT	1 cut(s)	987
BsuI	GTATCC	1 cut(s)	1464
BsuRI	GGCC	4 cut(s)	62, 260, 618, 750
BsuTUI	ATCGAT	1 cut(s)	987
BtgZI	GCGATG	1 cut(s)	1256
BtrI	CACGTC	1 cut(s)	83
BtsCI	GGATG	4 cut(s)	385, 424, 982, 1101
BtsIMutI	CAGTG	1 cut(s)	442
BveI	ACCTGC	1 cut(s)	712
Cac8I	GCNNGC	5 cut(s)	6, 96, 1013, 1182, 1218
CciI	TCATGA	2 cut(s)	252, 1111
CfoI	GCGC	3 cut(s)	683, 1186, 1261
Cfr10I	RCCGGY	1 cut(s)	94
Cfr13I	GGNCC	2 cut(s)	749, 1344
ClaI	ATCGAT	1 cut(s)	987
CseI	GACGC	2 cut(s)	338, 471
Csp6I	GTAC	5 cut(s)	495, 612, 1001, 1043, 1422
CviAII	CATG	5 cut(s)	253, 641, 1012, 1112, 1181
CviQI	GTAC	5 cut(s)	495, 612, 1001, 1043, 1422
DdeI	CTNAG	6 cut(s)	104, 237, 519, 734, 972, 1357
EaeI	YGGCCR	1 cut(s)	60
EagI	CGGCCG	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	1280
EarI	CTCTTC	1 cut(s)	1280
Ecl136II	GAGCTC	1 cut(s)	1033
EclXI	CGGCCG	1 cut(s)	60
Eco130I	CCWWGG	1 cut(s)	580
Eco147I	AGGCCT	1 cut(s)	260
Eco24I	GRGCYC	1 cut(s)	1035
Eco31I	GGTCTC	1 cut(s)	425
Eco47I	GGWCC	1 cut(s)	1344
Eco52I	CGGCCG	1 cut(s)	60
Eco53kI	GAGCTC	1 cut(s)	1033
Eco57I	CTGAAG	1 cut(s)	834
Eco72I	CACGTG	1 cut(s)	1208
Eco88I	CYCGRG	1 cut(s)	273
Eco91I	GGTNACC	1 cut(s)	49
EcoICRI	GAGCTC	1 cut(s)	1033
EcoO65I	GGTNACC	1 cut(s)	49
EcoRI	GAATTC	1 cut(s)	1005
EcoRII	CCWGG	2 cut(s)	228, 1105
EcoT14I	CCWWGG	1 cut(s)	580
EcoT22I	ATGCAT	1 cut(s)	1182
EcoT38I	GRGCYC	1 cut(s)	1035
ErhI	CCWWGG	1 cut(s)	580
FaeI	CATG	5 cut(s)	256, 644, 1015, 1115, 1184
FalI	AAGNNNNNCTT	4 cut(s)	281, 313, 717, 749
FaqI	GGGAC	3 cut(s)	14, 93, 308
FatI	CATG	5 cut(s)	252, 640, 1011, 1111, 1180
FauI	CCCGC	1 cut(s)	69
FauNDI	CATATG	1 cut(s)	1381
FblI	GTMKAC	1 cut(s)	327
Fnu4HI	GCNGC	4 cut(s)	63, 510, 832, 1016
FokI	GGATG	4 cut(s)	392, 431, 989, 1108
FriOI	GRGCYC	1 cut(s)	1035
Fsp4HI	GCNGC	4 cut(s)	63, 510, 832, 1016
FspBI	CTAG	5 cut(s)	26, 146, 503, 965, 1068
FspI	TGCGCA	2 cut(s)	1185, 1260
GlaI	GCGC	3 cut(s)	682, 1185, 1260
GluI	GCNGC	4 cut(s)	63, 510, 832, 1016
GsaI	CCCAGC	2 cut(s)	312, 365
HaeIII	GGCC	4 cut(s)	62, 260, 618, 750
HapII	CCGG	5 cut(s)	33, 47, 66, 95, 1457
HgaI	GACGC	2 cut(s)	338, 471
HhaI	GCGC	3 cut(s)	683, 1186, 1261
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	5 cut(s)	256, 644, 1015, 1115, 1184
Hin6I	GCGC	3 cut(s)	681, 1184, 1259
HinP1I	GCGC	3 cut(s)	681, 1184, 1259
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	1214
HinfI	GANTC	7 cut(s)	203, 440, 458, 534, 968, 1025, 1428
HpaII	CCGG	5 cut(s)	33, 47, 66, 95, 1457
HphI	GGTGA	4 cut(s)	4, 43, 792, 884
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188III	TCNNGA	7 cut(s)	89, 253, 395, 857, 965, 1112, 1163
Hpy8I	GTNNAC	1 cut(s)	328
Hpy99I	CGWCG	3 cut(s)	332, 487, 490
HpyAV	CCTTC	7 cut(s)	19, 164, 209, 250, 338, 416, 1223
HpyCH4III	ACNGT	2 cut(s)	611, 676
HpyCH4IV	ACGT	4 cut(s)	82, 786, 1198, 1207
HpyCH4V	TGCA	6 cut(s)	512, 916, 1015, 1079, 1180, 1211
HpyF10VI	GCNNNNNNNGC	5 cut(s)	100, 233, 687, 1217, 1307
HpyF3I	CTNAG	6 cut(s)	104, 237, 519, 734, 972, 1357
HpySE526I	ACGT	4 cut(s)	82, 786, 1198, 1207
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	5 cut(s)	256, 644, 1015, 1115, 1184
HspAI	GCGC	3 cut(s)	681, 1184, 1259
KroI	GCCGGC	1 cut(s)	94
KroNI	GCCGGC	1 cut(s)	96
LmnI	GCTCC	2 cut(s)	828, 1124
Lsp1109I	GCAGC	3 cut(s)	496, 843, 1027
LweI	GCATC	5 cut(s)	658, 769, 1138, 1246, 1288
MaeI	CTAG	5 cut(s)	26, 146, 503, 965, 1068
MaeII	ACGT	4 cut(s)	82, 786, 1198, 1207
MaeIII	GTNAC	1 cut(s)	49
MboII	GAAGA	9 cut(s)	395, 453, 456, 459, 462, 617, 840, 1297, 1423
MflI	RGATCY	3 cut(s)	767, 845, 853
MhlI	GDGCHC	2 cut(s)	653, 1035
MmeI	TCCRAC	1 cut(s)	297
Mph1103I	ATGCAT	1 cut(s)	1182
MroNI	GCCGGC	1 cut(s)	94
MroXI	GAANNNNTTC	1 cut(s)	927
MseI	TTAA	3 cut(s)	1293, 1334, 1446
MspCI	CTTAAG	1 cut(s)	1445
MspI	CCGG	5 cut(s)	33, 47, 66, 95, 1457
MspR9I	CCNGG	4 cut(s)	33, 230, 1107, 1458
MvaI	CCWGG	2 cut(s)	230, 1107
MwoI	GCNNNNNNNGC	5 cut(s)	100, 233, 687, 1217, 1307
NaeI	GCCGGC	1 cut(s)	96
NciI	CCSGG	2 cut(s)	33, 1458
NdeI	CATATG	1 cut(s)	1381
NgoMIV	GCCGGC	1 cut(s)	94
NlaIII	CATG	5 cut(s)	256, 644, 1015, 1115, 1184
NlaIV	GGNNCC	1 cut(s)	650
NmuCI	GTSAC	1 cut(s)	49
NsbI	TGCGCA	2 cut(s)	1185, 1260
NsiI	ATGCAT	1 cut(s)	1182
NspI	RCATGY	2 cut(s)	1015, 1184
PaeI	GCATGC	2 cut(s)	1015, 1184
PagI	TCATGA	2 cut(s)	252, 1111
PceI	AGGCCT	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	2 cut(s)	1204, 1321
PdiI	GCCGGC	1 cut(s)	96
PdmI	GAANNNNTTC	1 cut(s)	927
PfeI	GAWTC	7 cut(s)	203, 440, 458, 534, 968, 1025, 1428
PkrI	GCNGC	4 cut(s)	64, 511, 833, 1017
PmaCI	CACGTG	1 cut(s)	1208
PmlI	CACGTG	1 cut(s)	1208
Ppu21I	YACGTR	1 cut(s)	1208
PsiI	TTATAA	1 cut(s)	1559
Psp124BI	GAGCTC	1 cut(s)	1035
Psp6I	CCWGG	2 cut(s)	228, 1105
PspCI	CACGTG	1 cut(s)	1208
PspEI	GGTNACC	1 cut(s)	49
PspFI	CCCAGC	2 cut(s)	308, 361
PspGI	CCWGG	2 cut(s)	228, 1105
PspN4I	GGNNCC	1 cut(s)	650
PspPI	GGNCC	2 cut(s)	749, 1344
PsuI	RGATCY	3 cut(s)	767, 845, 853
RsaI	GTAC	5 cut(s)	496, 613, 1002, 1044, 1423
RsaNI	GTAC	5 cut(s)	495, 612, 1001, 1043, 1422
SacI	GAGCTC	1 cut(s)	1035
SalI	GTCGAC	1 cut(s)	326
SaqAI	TTAA	3 cut(s)	1293, 1334, 1446
SatI	GCNGC	4 cut(s)	63, 510, 832, 1016
Sau96I	GGNCC	2 cut(s)	749, 1344
ScaI	AGTACT	1 cut(s)	613
ScrFI	CCNGG	4 cut(s)	33, 230, 1107, 1458
SduI	GDGCHC	2 cut(s)	653, 1035
SfaNI	GCATC	5 cut(s)	658, 769, 1138, 1246, 1288
SfcI	CTRYAG	1 cut(s)	474
SinI	GGWCC	1 cut(s)	1344
SmlI	CTYRAG	3 cut(s)	89, 393, 1445
SmoI	CTYRAG	3 cut(s)	89, 393, 1445
SpeI	ACTAGT	1 cut(s)	1067
SphI	GCATGC	2 cut(s)	1015, 1184
SseBI	AGGCCT	1 cut(s)	260
SsiI	CCGC	3 cut(s)	63, 76, 193
SspMI	CTAG	5 cut(s)	26, 146, 503, 965, 1068
SstI	GAGCTC	1 cut(s)	1035
StuI	AGGCCT	1 cut(s)	260
StyD4I	CCNGG	4 cut(s)	31, 228, 1105, 1456
StyI	CCWWGG	1 cut(s)	580
TaaI	ACNGT	2 cut(s)	611, 676
TaiI	ACGT	4 cut(s)	85, 789, 1201, 1210
TaqI	TCGA	4 cut(s)	327, 537, 987, 1418
TatI	WGTACW	3 cut(s)	611, 1042, 1421
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	7 cut(s)	203, 440, 458, 534, 968, 1025, 1428
Tru1I	TTAA	3 cut(s)	1293, 1334, 1446
Tru9I	TTAA	3 cut(s)	1293, 1334, 1446
TscAI	CASTG	1 cut(s)	442
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	3 cut(s)	509, 831, 1015
Tsp45I	GTSAC	1 cut(s)	49
TspGWI	ACGGA	1 cut(s)	1548
TspRI	CASTG	1 cut(s)	442
Vha464I	CTTAAG	1 cut(s)	1445
VpaK11BI	GGWCC	1 cut(s)	1344
XapI	RAATTY	4 cut(s)	571, 860, 1005, 1475
XbaI	TCTAGA	1 cut(s)	964
XceI	RCATGY	2 cut(s)	1015, 1184
XmiI	GTMKAC	1 cut(s)	327
XmnI	GAANNNNTTC	1 cut(s)	927
XspI	CTAG	5 cut(s)	26, 146, 503, 965, 1068
ZrmI	AGTACT	1 cut(s)	613
Zsp2I	ATGCAT	1 cut(s)	1182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.