Prupe.1G266900_v2.0.a1

starch biosynthetic process

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
27464411 .. 27468254
3844 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G266900.1

Sequence Viewer

Length: 1617 bp
ATGCTCTCCTCCACCACCGCTGCGACCCACTTGCTCGTCTCGCCCTACTCCTTCCCGAATTTCACCCCTCACGCATTTCCTTCGATTCTCTACGTCGTTAATTCAAGAACCGCAAGGAGGCAGCAGCGTCTGAAGGCGATGAGCTTCGTTTCGGTTAGAGAAAGCGGATGTTCTTTGTGTTTAGGGTTTTCAGAGTTTAAGAAAGGAGCGTGTTCTGGGTTTGTGAGGCGATGTAAAGATTGGGATAGAGAGGGGGATTTCACCTTGGAAACTGAGATTTTGGAGTTCATGAAGAGCTCCAAGAAGCCTGGGGCTTTTCCGAGCAAGAAGGAGCTTCTTGAATCTGGGAGAGAGGATTTGGTTGATGCTATTGCGAGGAAAGGTGGTTGGCTTTCGTTGGGTTGGGATTTGGAAGAAGAAGAAGGAGCTCAAGATAGTAATTTTAGGCAGTGGGATTCGATAGTGGCTAAAGAAGGCGAGAGCAGTGCTTCGAGTGGCAGTCTAATTGGGGCTTCAGGCATGGTTTCTTCGTTTTCTGATGATTCTTCTCAAGCAGCGTCGTCGTCTGGTAGATCACTAGAAGCTGCTACAACAGAGGATGATACTGGAATCGAGGGAATATTGAATCGATTGGAGAAACAGAGAAATTTGACGTTTGGATTTAATTTGAAAGAAAAAGAAGACGATGTTTTCTTCCCAAGTACTTACAAGTTTCCCGAAATCTCAACTGATGCGACAGTTGCTGGCCTTGTTAGAAGCAGCAGACCTGCATCATTGAACCCCAAAAAAGCCATTCTTAATGATTCAAGAGACAAGCCTAACCACAACAGATCTCTTTCAGACATTGATGTCCTAGCAGACTCACCAAGACCAGAAATGTGGAGAACTTGGAGCATCCAGAGGGCTGGATTTTCAGATCAGGATTTTGAAGCTGCTGAAATTTCTTATGATAAAATGAGAGGGCCAGAGGATGTTTCAAGAGAAGAAATATTTCAATTAAGAAAGGGTGCTAATGAACCTGATCAAAGGAATAAACTGAATTCTCATCAGGAAGAGATCAGTCACAAGCAAATACGTGATCACATTAAGTACCTTGAATCAGAGCTCTCCTCTGCACTTCGTTCATTGAGGAATAGATCTGATGAAGCTGCTTCACAGGTTCATGAAAGCTCCTCTGATGATTTTCGGAAGCTTTCTGATGCCTGGGAGTTTCAGGAAAATGAGATTATGCATGCCCAGGACAAATTGCGTTCGACACGTGCAAAGTTGGCTGTTTTAGAAGGAAAGATGGCACTGGCAATAATTGCAGCGCAAAAGACTGTGGAGGAGAAACAGAGAAGGATAAATGATGCTCGTAGAGCCTTACAACTTCTTCGTACTGCTTACATAGTTTGGCCAAATTCAGCCTCAGAAGTGCTCATTGCTGGATCATATGATGGTTGGACCACCCAGAGAAAGATGGAAAAGTCCAGTACAGGAATCTTCTCTTTGTGCCTTAGGTTGTATCCGGGCAGATATGAGATCAAATTTGTTGTTGATGGTGAATGGCGGATTGATCCCTTGCGCCCTATTGTTCACAACAGTGGATATGAAAACAATGTCCTGATCATAACGTAA

Protein Analysis

539

Amino Acids

60.57

Weight (kDa)

5.89

Isoelectric Point (pI)

57.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 848
Acc36I ACCTGC 1 cut(s) 775
AciI CCGC 4 cut(s) 18, 111, 165, 1549
AclWI GGATC 2 cut(s) 1435, 1550
AcoI YGGCCR 1 cut(s) 1394
AcsI RAATTY 6 cut(s) 58, 646, 939, 1039, 1399, 1526
AcuI CTGAAG 2 cut(s) 152, 498
AcvI CACGTG 1 cut(s) 1259
AfaI GTAC 4 cut(s) 703, 1091, 1378, 1474
AfiI CCNNNNNNNGG 1 cut(s) 117
AflIII ACRYGT 1 cut(s) 1256
AjnI CCWGG 3 cut(s) 307, 1202, 1236
AleI CACNNNNGTG 1 cut(s) 1581
Alw21I GWGCWC 4 cut(s) 299, 430, 1107, 1419
Alw26I GTCTC 2 cut(s) 43, 804
AlwI GGATC 2 cut(s) 1435, 1550
AlwNI CAGNNNCTG 2 cut(s) 130, 743
AoxI GGCC 3 cut(s) 745, 962, 1394
ApeKI GCWGC 9 cut(s) 20, 121, 124, 554, 584, 759, 932, 1148, 1307
ApoI RAATTY 6 cut(s) 58, 646, 939, 1039, 1399, 1526
Asp700I GAANNNNTTC 1 cut(s) 990
AspLEI GCGC 2 cut(s) 1312, 1566
AspS9I GGNCC 2 cut(s) 962, 1443
AsuC2I CCSGG 1 cut(s) 1509
AsuHPI GGTGA 4 cut(s) 55, 253, 855, 1553
AvaII GGWCC 1 cut(s) 1443
AxyI CCTNAGG 1 cut(s) 1496
BalI TGGCCA 1 cut(s) 1396
BanII GRGCYC 3 cut(s) 299, 430, 1107
BbrPI CACGTG 1 cut(s) 1259
BbsI GAAGAC 1 cut(s) 687
Bbv12I GWGCWC 4 cut(s) 299, 430, 1107, 1419
BbvI GCAGC 9 cut(s) 7, 133, 136, 566, 571, 771, 919, 1135, 1319
BccI CCATC 4 cut(s) 1282, 1430, 1453, 1532
BcgI CGANNNNNNTGC 8 cut(s) 13, 47, 63, 97, 467, 501, 543, 577
BciT130I CCWGG 3 cut(s) 309, 1204, 1238
BciVI GTATCC 1 cut(s) 1515
BclI TGATCA 3 cut(s) 1021, 1078, 1605
BcnI CCSGG 1 cut(s) 1509
BcoDI GTCTC 2 cut(s) 43, 804
BfaI CTAG 2 cut(s) 578, 854
BfuAI ACCTGC 1 cut(s) 775
BfuI GTATCC 1 cut(s) 1515
BglII AGATCT 2 cut(s) 830, 1136
BisI GCNGC 9 cut(s) 21, 122, 125, 555, 585, 760, 933, 1149, 1308
BlsI GCNGC 9 cut(s) 22, 123, 126, 556, 586, 761, 934, 1150, 1309
BmcAI AGTACT 1 cut(s) 703
Bme1390I CCNGG 4 cut(s) 309, 1204, 1238, 1509
Bme18I GGWCC 1 cut(s) 1443
BmgT120I GGNCC 2 cut(s) 962, 1443
BmrFI CCNGG 4 cut(s) 309, 1204, 1238, 1509
BmsI GCATC 6 cut(s) 355, 721, 779, 903, 1189, 1339
BpiI GAAGAC 1 cut(s) 687
BplI GAGNNNNNCTC 2 cut(s) 1094, 1126
BpuEI CTTGAG 2 cut(s) 414, 534
BpuMI CCSGG 1 cut(s) 1509
Bsa29I ATCGAT 1 cut(s) 628
BsaAI YACGTR 2 cut(s) 1076, 1259
BsaJI CCNNGG 4 cut(s) 264, 308, 1203, 1236
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse1I ACTGG 3 cut(s) 610, 1299, 1470
Bse21I CCTNAGG 1 cut(s) 1496
Bse3DI GCAATG 1 cut(s) 1419
BseBI CCWGG 3 cut(s) 309, 1204, 1238
BseCI ATCGAT 1 cut(s) 628
BseDI CCNNGG 4 cut(s) 264, 308, 1203, 1236
BseGI GGATG 4 cut(s) 173, 604, 894, 976
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMI GCAATG 1 cut(s) 1419
BseMII CTCAG 2 cut(s) 264, 1422
BseNI ACTGG 3 cut(s) 610, 1299, 1470
BseRI GAGGAG 3 cut(s) 1099, 1162, 1340
BseXI GCAGC 9 cut(s) 7, 133, 136, 566, 571, 771, 919, 1135, 1319
BsgI GTGCAG 1 cut(s) 1098
BshFI GGCC 3 cut(s) 747, 964, 1396
BshVI ATCGAT 1 cut(s) 628
BsiHKAI GWGCWC 4 cut(s) 299, 430, 1107, 1419
BsiSI CCGG 1 cut(s) 1508
BslI CCNNNNNNNGG 1 cut(s) 117
BsmAI GTCTC 2 cut(s) 43, 804
BsmBI CGTCTC 1 cut(s) 43
BsnI GGCC 3 cut(s) 747, 964, 1396
Bsp1286I GDGCHC 4 cut(s) 299, 430, 1107, 1419
BspACI CCGC 4 cut(s) 18, 111, 165, 1549
BspANI GGCC 3 cut(s) 747, 964, 1396
BspCNI CTCAG 2 cut(s) 265, 1421
BspDI ATCGAT 1 cut(s) 628
BspHI TCATGA 2 cut(s) 288, 1162
BspMI ACCTGC 1 cut(s) 775
BspPI GGATC 2 cut(s) 1435, 1550
BspQI GCTCTTC 1 cut(s) 287
BsrDI GCAATG 1 cut(s) 1419
BsrI ACTGG 3 cut(s) 610, 1299, 1470
BssECI CCNNGG 4 cut(s) 264, 308, 1203, 1236
BssT1I CCWWGG 1 cut(s) 264
Bst2UI CCWGG 3 cut(s) 309, 1204, 1238
Bst4CI ACNGT 3 cut(s) 739, 1321, 1583
Bst6I CTCTTC 2 cut(s) 287, 1047
BstAPI GCANNNNNTGC 1 cut(s) 1304
BstBAI YACGTR 2 cut(s) 1076, 1259
BstC8I GCNNGC 2 cut(s) 745, 1233
BstDEI CTNAG 3 cut(s) 273, 1408, 1496
BstF5I GGATG 4 cut(s) 173, 604, 894, 976
BstHHI GCGC 2 cut(s) 1312, 1566
BstMAI GTCTC 2 cut(s) 43, 804
BstMWI GCNNNNNNNGC 5 cut(s) 40, 740, 1268, 1304, 1358
BstNI CCWGG 3 cut(s) 309, 1204, 1238
BstNSI RCATGY 1 cut(s) 1235
BstSCI CCNGG 4 cut(s) 307, 1202, 1236, 1507
BstV1I GCAGC 9 cut(s) 7, 133, 136, 566, 571, 771, 919, 1135, 1319
BstV2I GAAGAC 1 cut(s) 687
BstX2I RGATCY 2 cut(s) 830, 1136
BstXI CCANNNNNNTGG 2 cut(s) 879, 905
BstYI RGATCY 2 cut(s) 830, 1136
Bsu15I ATCGAT 1 cut(s) 628
Bsu36I CCTNAGG 1 cut(s) 1496
BsuI GTATCC 1 cut(s) 1515
BsuRI GGCC 3 cut(s) 747, 964, 1396
BsuTUI ATCGAT 1 cut(s) 628
BtgZI GCGATG 2 cut(s) 152, 244
BtsCI GGATG 4 cut(s) 173, 604, 894, 976
BtsI GCAGTG 2 cut(s) 455, 490
BtsIMutI CAGTG 4 cut(s) 455, 490, 1292, 1588
BveI ACCTGC 1 cut(s) 775
Cac8I GCNNGC 2 cut(s) 745, 1233
CaiI CAGNNNCTG 2 cut(s) 130, 743
CciI TCATGA 2 cut(s) 288, 1162
CfoI GCGC 2 cut(s) 1312, 1566
Cfr13I GGNCC 2 cut(s) 962, 1443
ClaI ATCGAT 1 cut(s) 628
CseI GACGC 2 cut(s) 116, 546
Csp6I GTAC 4 cut(s) 702, 1090, 1377, 1473
CviAII CATG 4 cut(s) 289, 520, 1163, 1232
CviQI GTAC 4 cut(s) 702, 1090, 1377, 1473
DdeI CTNAG 3 cut(s) 273, 1408, 1496
DrdI GACNNNNNNGTC 1 cut(s) 848
DseDI GACNNNNNNGTC 1 cut(s) 848
EaeI YGGCCR 1 cut(s) 1394
Eam1104I CTCTTC 2 cut(s) 287, 1047
EarI CTCTTC 2 cut(s) 287, 1047
EciI GGCGGA 1 cut(s) 1564
Ecl136II GAGCTC 3 cut(s) 297, 428, 1105
Eco130I CCWWGG 1 cut(s) 264
Eco24I GRGCYC 3 cut(s) 299, 430, 1107
Eco47I GGWCC 1 cut(s) 1443
Eco53kI GAGCTC 3 cut(s) 297, 428, 1105
Eco57I CTGAAG 2 cut(s) 152, 498
Eco72I CACGTG 1 cut(s) 1259
Eco81I CCTNAGG 1 cut(s) 1496
EcoICRI GAGCTC 3 cut(s) 297, 428, 1105
EcoRI GAATTC 1 cut(s) 1039
EcoRII CCWGG 3 cut(s) 307, 1202, 1236
EcoT14I CCWWGG 1 cut(s) 264
EcoT22I ATGCAT 1 cut(s) 1233
EcoT38I GRGCYC 3 cut(s) 299, 430, 1107
ErhI CCWWGG 1 cut(s) 264
Esp3I CGTCTC 1 cut(s) 43
FaeI CATG 4 cut(s) 292, 523, 1166, 1235
FalI AAGNNNNNCTT 2 cut(s) 780, 812
FatI CATG 4 cut(s) 288, 519, 1162, 1231
FauNDI CATATG 1 cut(s) 1432
FbaI TGATCA 3 cut(s) 1021, 1078, 1605
Fnu4HI GCNGC 9 cut(s) 21, 122, 125, 555, 585, 760, 933, 1149, 1308
FokI GGATG 4 cut(s) 180, 611, 881, 983
FriOI GRGCYC 3 cut(s) 299, 430, 1107
Fsp4HI GCNGC 9 cut(s) 21, 122, 125, 555, 585, 760, 933, 1149, 1308
FspBI CTAG 2 cut(s) 578, 854
GlaI GCGC 2 cut(s) 1311, 1565
GluI GCNGC 9 cut(s) 21, 122, 125, 555, 585, 760, 933, 1149, 1308
HaeIII GGCC 3 cut(s) 747, 964, 1396
HapII CCGG 1 cut(s) 1508
HgaI GACGC 2 cut(s) 116, 546
HhaI GCGC 2 cut(s) 1312, 1566
Hin1II CATG 4 cut(s) 292, 523, 1166, 1235
Hin6I GCGC 2 cut(s) 1310, 1564
HinP1I GCGC 2 cut(s) 1310, 1564
HindIII AAGCTT 1 cut(s) 1190
HpaII CCGG 1 cut(s) 1508
HphI GGTGA 4 cut(s) 55, 253, 855, 1553
Hpy166II GTNNAC 1 cut(s) 1576
Hpy8I GTNNAC 1 cut(s) 1576
Hpy99I CGWCG 3 cut(s) 98, 562, 565
HpyAV CCTTC 8 cut(s) 61, 90, 127, 322, 416, 467, 1274, 1332
HpyCH4III ACNGT 3 cut(s) 739, 1321, 1583
HpyCH4IV ACGT 5 cut(s) 93, 653, 1075, 1258, 1613
HpyCH4V TGCA 5 cut(s) 770, 1115, 1231, 1262, 1307
HpyF10VI GCNNNNNNNGC 5 cut(s) 40, 740, 1268, 1304, 1358
HpyF3I CTNAG 3 cut(s) 273, 1408, 1496
HpySE526I ACGT 5 cut(s) 93, 653, 1075, 1258, 1613
Hsp92II CATG 4 cut(s) 292, 523, 1166, 1235
HspAI GCGC 2 cut(s) 1310, 1564
Ksp22I TGATCA 3 cut(s) 1021, 1078, 1605
LguI GCTCTTC 1 cut(s) 287
LmnI GCTCC 6 cut(s) 206, 302, 331, 425, 891, 1175
Lsp1109I GCAGC 9 cut(s) 7, 133, 136, 566, 571, 771, 919, 1135, 1319
LweI GCATC 6 cut(s) 355, 721, 779, 903, 1189, 1339
MaeI CTAG 2 cut(s) 578, 854
MaeII ACGT 5 cut(s) 93, 653, 1075, 1258, 1613
MaeIII GTNAC 1 cut(s) 1061
MflI RGATCY 2 cut(s) 830, 1136
MhlI GDGCHC 4 cut(s) 299, 430, 1107, 1419
MlsI TGGCCA 1 cut(s) 1396
MluNI TGGCCA 1 cut(s) 1396
MlyI GAGTC 1 cut(s) 854
MmeI TCCRAC 1 cut(s) 1421
Mox20I TGGCCA 1 cut(s) 1396
Mph1103I ATGCAT 1 cut(s) 1233
MroXI GAANNNNTTC 1 cut(s) 990
MscI TGGCCA 1 cut(s) 1396
MseI TTAA 6 cut(s) 99, 198, 663, 798, 998, 1086
MslI CAYNNNNRTG 1 cut(s) 1581
Msp20I TGGCCA 1 cut(s) 1396
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 1 cut(s) 1508
MspR9I CCNGG 4 cut(s) 309, 1204, 1238, 1509
MvaI CCWGG 3 cut(s) 309, 1204, 1238
MwoI GCNNNNNNNGC 5 cut(s) 40, 740, 1268, 1304, 1358
NciI CCSGG 1 cut(s) 1509
NdeI CATATG 1 cut(s) 1432
NlaIII CATG 4 cut(s) 292, 523, 1166, 1235
NmuCI GTSAC 1 cut(s) 1061
NsiI ATGCAT 1 cut(s) 1233
NspI RCATGY 1 cut(s) 1235
OliI CACNNNNGTG 1 cut(s) 1581
PaeI GCATGC 1 cut(s) 1235
PagI TCATGA 2 cut(s) 288, 1162
PciSI GCTCTTC 1 cut(s) 287
PdmI GAANNNNTTC 1 cut(s) 990
PfeI GAWTC 9 cut(s) 85, 341, 455, 542, 609, 625, 803, 1097, 1479
PkrI GCNGC 9 cut(s) 22, 123, 126, 556, 586, 761, 934, 1150, 1309
PleI GAGTC 1 cut(s) 854
PmaCI CACGTG 1 cut(s) 1259
PmlI CACGTG 1 cut(s) 1259
PpsI GAGTC 1 cut(s) 854
Ppu21I YACGTR 2 cut(s) 1076, 1259
Psp124BI GAGCTC 3 cut(s) 299, 430, 1107
Psp6I CCWGG 3 cut(s) 307, 1202, 1236
PspCI CACGTG 1 cut(s) 1259
PspGI CCWGG 3 cut(s) 307, 1202, 1236
PspPI GGNCC 2 cut(s) 962, 1443
PstNI CAGNNNCTG 2 cut(s) 130, 743
PsuI RGATCY 2 cut(s) 830, 1136
RsaI GTAC 4 cut(s) 703, 1091, 1378, 1474
RsaNI GTAC 4 cut(s) 702, 1090, 1377, 1473
RseI CAYNNNNRTG 1 cut(s) 1581
SacI GAGCTC 3 cut(s) 299, 430, 1107
SapI GCTCTTC 1 cut(s) 287
SaqAI TTAA 6 cut(s) 99, 198, 663, 798, 998, 1086
SatI GCNGC 9 cut(s) 21, 122, 125, 555, 585, 760, 933, 1149, 1308
Sau96I GGNCC 2 cut(s) 962, 1443
ScaI AGTACT 1 cut(s) 703
SchI GAGTC 1 cut(s) 854
ScrFI CCNGG 4 cut(s) 309, 1204, 1238, 1509
SduI GDGCHC 4 cut(s) 299, 430, 1107, 1419
SfaNI GCATC 6 cut(s) 355, 721, 779, 903, 1189, 1339
SinI GGWCC 1 cut(s) 1443
SmiMI CAYNNNNRTG 1 cut(s) 1581
SmlI CTYRAG 2 cut(s) 429, 549
SmoI CTYRAG 2 cut(s) 429, 549
SphI GCATGC 1 cut(s) 1235
SsiI CCGC 4 cut(s) 18, 111, 165, 1549
SspI AATATT 2 cut(s) 621, 990
SspMI CTAG 2 cut(s) 578, 854
SstI GAGCTC 3 cut(s) 299, 430, 1107
StyD4I CCNGG 4 cut(s) 307, 1202, 1236, 1507
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 3 cut(s) 739, 1321, 1583
TaiI ACGT 5 cut(s) 96, 656, 1078, 1261, 1616
TaqI TCGA 6 cut(s) 83, 458, 491, 612, 628, 1253
TatI WGTACW 2 cut(s) 701, 1472
TfiI GAWTC 9 cut(s) 85, 341, 455, 542, 609, 625, 803, 1097, 1479
Tru1I TTAA 6 cut(s) 99, 198, 663, 798, 998, 1086
Tru9I TTAA 6 cut(s) 99, 198, 663, 798, 998, 1086
TscAI CASTG 4 cut(s) 455, 490, 1299, 1588
TseFI GTSAC 1 cut(s) 1061
TseI GCWGC 9 cut(s) 20, 121, 124, 554, 584, 759, 932, 1148, 1307
Tsp45I GTSAC 1 cut(s) 1061
TspDTI ATGAA 8 cut(s) 277, 305, 1029, 1113, 1151, 1158, 1179, 1605
TspRI CASTG 4 cut(s) 455, 490, 1299, 1588
VpaK11BI GGWCC 1 cut(s) 1443
XapI RAATTY 6 cut(s) 58, 646, 939, 1039, 1399, 1526
XceI RCATGY 1 cut(s) 1235
XmnI GAANNNNTTC 1 cut(s) 990
XspI CTAG 2 cut(s) 578, 854
ZrmI AGTACT 1 cut(s) 703
Zsp2I ATGCAT 1 cut(s) 1233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.