Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022158.1

Orthogroup ID

OG0007960

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1805

Gene Structure 1805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022158.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 899 bp

ttggtgcaacaagtagaagtatcagacctgcttcatcaaaccccactaaagccattcttagtgatttgggaggcccacataatcatagcagatatcttttagatgctgatgttcagagaaactcaccaaagcctgaaatgtggagaacttggagcagccaaagggctggatcttcagatctggaatttgaagctggtgaagtttcttatgatgaaatgggaggatcaaagggagttttgcaaaatgaaatacttcaaacgaaagatggtgctaatgaaccgaatggaaggaatgatctagactctgaggatgaagtgatcaattacaaacaagtacgaattcgcatgctgcaccttgaatccgagctatcctctgtactccactcattgaggtctaaaactagtaatgttgcaccaaaggagatgggggtgattactcctggtcatgaaagctcctctgatgatttgcggaaagtctctgatgcttgggagtttcaagaaaatgaaattatgcatgcccagaacaaattacgttcaacacgtgcaaagcttgctgttttagaaggaaagatggcgatggcaataattgatgcgcaaaagaaagtggaggagaaacagaagagggttaatgatgctcgtagagccgtaaggcttctccgaactgctttaatagtttggaccaatccagcctcagaagtgcttttagcaggatcatatgatggttgggctacccagagaaagatggagaggtcgagtacaggaatcttctctgttagccttaagttgtatccgggtagatatgagatcaaattcattgttgatggggaatggcgaattgatcccctacgcccaattgttcgcaacaacggatttgaaaataatatactgattataacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001871 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0006109 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010556 GO:0010581 GO:0010675 GO:0010962 GO:0016051 GO:0019222 GO:0019252 GO:0030246 GO:0030247 GO:0031323 GO:0031326 GO:0032881 GO:0032885 GO:0033692 GO:0034637 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0060255 GO:0065007 GO:0070492 GO:0071704 GO:0080050 GO:0080090 GO:0097367 GO:1901576 GO:2000014 GO:2000026 GO:2000112 GO:2000241 GO:2000904 GO:2001066 GO:2001070 GO:2001071

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM

Protein Analysis

298

Amino Acids

33.47

Weight (kDa)

8.06

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27070
fragaria_vesca	FvH4_4g32100 FvH4_4g32100 FvH4_4g32100 FvH4_4g32100 FvH4_4g32100
malus_domestica	MD13G1079900.v1.1 MD16G1079800.v1.1
prunus_persica	Prupe.1G266900_v2.0.a1
pyrus_communis	pycom13g06940 pycom16g06890
rosa_chinensis	RchiOBHm_Chr4g0440791
rosa_laevigata	RLG00000006153
rosa_multiflora	Rmu_sc0000424.1_g000007 Rmu_sc0000780.1_g000019 Rmu_sc0022158.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381550
rosa_rugosa	Rorug04G0327900 Rorug04G0328000
rosa_samantha	Rh4AG379800 Rh4BG392700 Rh4CG407500 Rh4DG386500
rosa_wichuraiana	Rw4G032700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	892
Acc16I	TGCGCA	1 cut(s)	593
Acc36I	ACCTGC	1 cut(s)	36
AciI	CCGC	1 cut(s)	468
AclWI	GGATC	4 cut(s)	177, 231, 717, 832
AcsI	RAATTY	3 cut(s)	184, 338, 808
AcuI	CTGAAG	1 cut(s)	158
AcvI	CACGTG	1 cut(s)	541
AfaI	GTAC	3 cut(s)	335, 377, 756
AflII	CTTAAG	1 cut(s)	778
AflIII	ACRYGT	1 cut(s)	538
AgsI	TTSAA	6 cut(s)	190, 256, 358, 496, 536, 874
AhlI	ACTAGT	1 cut(s)	400
AjnI	CCWGG	1 cut(s)	438
AluBI	AGCT	4 cut(s)	193, 366, 452, 549
AluI	AGCT	4 cut(s)	193, 366, 452, 549
Alw26I	GTCTC	1 cut(s)	480
AlwI	GGATC	4 cut(s)	177, 231, 717, 832
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	2 cut(s)	155, 348
ApoI	RAATTY	3 cut(s)	184, 338, 808
Asp700I	GAANNNNTTC	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	594
AspS9I	GGNCC	2 cut(s)	73, 677
AsuC2I	CCSGG	1 cut(s)	791
AsuHPI	GGTGA	3 cut(s)	116, 208, 441
AvaII	GGWCC	1 cut(s)	677
BbrPI	CACGTG	1 cut(s)	541
BbvI	GCAGC	2 cut(s)	167, 335
BccI	CCATC	7 cut(s)	259, 417, 564, 570, 712, 735, 814
BceAI	ACGGC	1 cut(s)	628
BciT130I	CCWGG	1 cut(s)	440
BciVI	GTATCC	1 cut(s)	797
BclI	TGATCA	1 cut(s)	317
BcnI	CCSGG	1 cut(s)	791
BcoDI	GTCTC	1 cut(s)	480
BcuI	ACTAGT	1 cut(s)	400
BfaI	CTAG	2 cut(s)	298, 401
BfrI	CTTAAG	1 cut(s)	778
BfuAI	ACCTGC	1 cut(s)	36
BfuI	GTATCC	1 cut(s)	797
BglII	AGATCT	1 cut(s)	177
BisI	GCNGC	2 cut(s)	156, 349
BlsI	GCNGC	2 cut(s)	157, 350
Bme1390I	CCNGG	2 cut(s)	440, 791
Bme18I	GGWCC	1 cut(s)	677
BmgT120I	GGNCC	2 cut(s)	73, 677
BmrFI	CCNGG	2 cut(s)	440, 791
BmsI	GCATC	4 cut(s)	93, 471, 579, 621
BplI	GAGNNNNNCTC	2 cut(s)	355, 387
BpuMI	CCSGG	1 cut(s)	791
BsaAI	YACGTR	1 cut(s)	541
BseBI	CCWGG	1 cut(s)	440
BseGI	GGATG	1 cut(s)	315
BseMII	CTCAG	2 cut(s)	296, 704
BseRI	GAGGAG	2 cut(s)	444, 622
BseXI	GCAGC	2 cut(s)	167, 335
BsgI	GTGCAG	1 cut(s)	334
BshFI	GGCC	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	790
BsmAI	GTCTC	1 cut(s)	480
BsnI	GGCC	1 cut(s)	74
Bsp143I	GATC	8 cut(s)	169, 177, 223, 294, 317, 709, 803, 837
BspACI	CCGC	1 cut(s)	468
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	2 cut(s)	297, 703
BspHI	TCATGA	1 cut(s)	444
BspMI	ACCTGC	1 cut(s)	36
BspPI	GGATC	4 cut(s)	177, 231, 717, 832
BspTI	CTTAAG	1 cut(s)	778
BssMI	GATC	8 cut(s)	169, 177, 223, 294, 317, 709, 803, 837
Bst2UI	CCWGG	1 cut(s)	440
Bst6I	CTCTTC	1 cut(s)	613
BstAFI	CTTAAG	1 cut(s)	778
BstAPI	GCANNNNNTGC	1 cut(s)	550
BstBAI	YACGTR	1 cut(s)	541
BstC8I	GCNNGC	3 cut(s)	346, 515, 551
BstDEI	CTNAG	3 cut(s)	58, 305, 690
BstF5I	GGATG	1 cut(s)	315
BstHHI	GCGC	1 cut(s)	594
BstKTI	GATC	8 cut(s)	172, 180, 226, 297, 320, 712, 806, 840
BstMAI	GTCTC	1 cut(s)	480
BstMBI	GATC	8 cut(s)	169, 177, 223, 294, 317, 709, 803, 837
BstMWI	GCNNNNNNNGC	2 cut(s)	550, 640
BstNI	CCWGG	1 cut(s)	440
BstNSI	RCATGY	2 cut(s)	348, 517
BstSCI	CCNGG	2 cut(s)	438, 789
BstV1I	GCAGC	2 cut(s)	167, 335
BstX2I	RGATCY	2 cut(s)	169, 177
BstXI	CCANNNNNNTGG	1 cut(s)	166
BstYI	RGATCY	2 cut(s)	169, 177
BsuI	GTATCC	1 cut(s)	797
BsuRI	GGCC	1 cut(s)	74
BtgZI	GCGATG	1 cut(s)	589
BtsCI	GGATG	1 cut(s)	315
BveI	ACCTGC	1 cut(s)	36
Cac8I	GCNNGC	3 cut(s)	346, 515, 551
CciI	TCATGA	1 cut(s)	444
CfoI	GCGC	1 cut(s)	594
Cfr13I	GGNCC	2 cut(s)	73, 677
Csp6I	GTAC	3 cut(s)	334, 376, 755
CviAII	CATG	3 cut(s)	345, 445, 514
CviQI	GTAC	3 cut(s)	334, 376, 755
DdeI	CTNAG	3 cut(s)	58, 305, 690
DpnI	GATC	8 cut(s)	171, 179, 225, 296, 319, 711, 805, 839
DpnII	GATC	8 cut(s)	169, 177, 223, 294, 317, 709, 803, 837
Eam1104I	CTCTTC	1 cut(s)	613
EarI	CTCTTC	1 cut(s)	613
Eco32I	GATATC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	677
Eco57I	CTGAAG	1 cut(s)	158
Eco72I	CACGTG	1 cut(s)	541
EcoRI	GAATTC	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	438
EcoRV	GATATC	1 cut(s)	94
EcoT22I	ATGCAT	1 cut(s)	515
FaeI	CATG	3 cut(s)	348, 448, 517
FalI	AAGNNNNNCTT	2 cut(s)	41, 73
FatI	CATG	3 cut(s)	344, 444, 513
FauNDI	CATATG	1 cut(s)	714
FbaI	TGATCA	1 cut(s)	317
Fnu4HI	GCNGC	2 cut(s)	156, 349
FokI	GGATG	1 cut(s)	322
Fsp4HI	GCNGC	2 cut(s)	156, 349
FspBI	CTAG	2 cut(s)	298, 401
FspI	TGCGCA	1 cut(s)	593
GlaI	GCGC	1 cut(s)	593
GluI	GCNGC	2 cut(s)	156, 349
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	1 cut(s)	790
HhaI	GCGC	1 cut(s)	594
Hin1II	CATG	3 cut(s)	348, 448, 517
Hin6I	GCGC	1 cut(s)	592
HinP1I	GCGC	1 cut(s)	592
HindIII	AAGCTT	1 cut(s)	547
HinfI	GANTC	3 cut(s)	301, 358, 761
HpaII	CCGG	1 cut(s)	790
HphI	GGTGA	3 cut(s)	116, 208, 441
Hpy188I	TCNGA	9 cut(s)	25, 116, 177, 306, 363, 459, 480, 658, 693
Hpy188III	TCNNGA	4 cut(s)	181, 298, 445, 496
HpyAV	CCTTC	2 cut(s)	281, 556
HpyCH4IV	ACGT	2 cut(s)	531, 540
HpyCH4V	TGCA	6 cut(s)	7, 240, 351, 412, 513, 544
HpyF10VI	GCNNNNNNNGC	2 cut(s)	550, 640
HpyF3I	CTNAG	3 cut(s)	58, 305, 690
HpySE526I	ACGT	2 cut(s)	531, 540
Hsp92II	CATG	3 cut(s)	348, 448, 517
HspAI	GCGC	1 cut(s)	592
Ksp22I	TGATCA	1 cut(s)	317
Kzo9I	GATC	8 cut(s)	169, 177, 223, 294, 317, 709, 803, 837
LmnI	GCTCC	2 cut(s)	152, 457
Lsp1109I	GCAGC	2 cut(s)	167, 335
LweI	GCATC	4 cut(s)	93, 471, 579, 621
MaeI	CTAG	2 cut(s)	298, 401
MaeII	ACGT	2 cut(s)	531, 540
MalI	GATC	8 cut(s)	171, 179, 225, 296, 319, 711, 805, 839
MboI	GATC	8 cut(s)	169, 177, 223, 294, 317, 709, 803, 837
MboII	GAAGA	3 cut(s)	164, 630, 756
MfeI	CAATTG	1 cut(s)	851
MflI	RGATCY	2 cut(s)	169, 177
MluCI	AATT	9 cut(s)	184, 321, 338, 506, 526, 584, 808, 833, 851
MlyI	GAGTC	1 cut(s)	295
Mph1103I	ATGCAT	1 cut(s)	515
MroXI	GAANNNNTTC	1 cut(s)	251
MseI	TTAA	3 cut(s)	626, 667, 779
MspCI	CTTAAG	1 cut(s)	778
MspI	CCGG	1 cut(s)	790
MspR9I	CCNGG	2 cut(s)	440, 791
MunI	CAATTG	1 cut(s)	851
MvaI	CCWGG	1 cut(s)	440
MwoI	GCNNNNNNNGC	2 cut(s)	550, 640
NciI	CCSGG	1 cut(s)	791
NdeI	CATATG	1 cut(s)	714
NdeII	GATC	8 cut(s)	169, 177, 223, 294, 317, 709, 803, 837
NlaIII	CATG	3 cut(s)	348, 448, 517
NsbI	TGCGCA	1 cut(s)	593
NsiI	ATGCAT	1 cut(s)	515
NspI	RCATGY	2 cut(s)	348, 517
PaeI	GCATGC	2 cut(s)	348, 517
PagI	TCATGA	1 cut(s)	444
PcsI	WCGNNNNNNNCGW	1 cut(s)	537
PdmI	GAANNNNTTC	1 cut(s)	251
PfeI	GAWTC	2 cut(s)	358, 761
PkrI	GCNGC	2 cut(s)	157, 350
PleI	GAGTC	1 cut(s)	295
PmaCI	CACGTG	1 cut(s)	541
PmlI	CACGTG	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	295
Ppu21I	YACGTR	1 cut(s)	541
PsiI	TTATAA	1 cut(s)	892
Psp6I	CCWGG	1 cut(s)	438
PspCI	CACGTG	1 cut(s)	541
PspGI	CCWGG	1 cut(s)	438
PspPI	GGNCC	2 cut(s)	73, 677
PsuI	RGATCY	2 cut(s)	169, 177
RsaI	GTAC	3 cut(s)	335, 377, 756
RsaNI	GTAC	3 cut(s)	334, 376, 755
SaqAI	TTAA	3 cut(s)	626, 667, 779
SatI	GCNGC	2 cut(s)	156, 349
Sau3AI	GATC	8 cut(s)	169, 177, 223, 294, 317, 709, 803, 837
Sau96I	GGNCC	2 cut(s)	73, 677
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	2 cut(s)	440, 791
SfaNI	GCATC	4 cut(s)	93, 471, 579, 621
SinI	GGWCC	1 cut(s)	677
SmlI	CTYRAG	1 cut(s)	778
SmoI	CTYRAG	1 cut(s)	778
SpeI	ACTAGT	1 cut(s)	400
SphI	GCATGC	2 cut(s)	348, 517
Sse9I	AATT	9 cut(s)	184, 321, 338, 506, 526, 584, 808, 833, 851
SsiI	CCGC	1 cut(s)	468
SspMI	CTAG	2 cut(s)	298, 401
StyD4I	CCNGG	2 cut(s)	438, 789
TaiI	ACGT	2 cut(s)	534, 543
TaqI	TCGA	1 cut(s)	751
TasI	AATT	9 cut(s)	184, 321, 338, 506, 526, 584, 808, 833, 851
TatI	WGTACW	2 cut(s)	375, 754
TfiI	GAWTC	2 cut(s)	358, 761
Tru1I	TTAA	3 cut(s)	626, 667, 779
Tru9I	TTAA	3 cut(s)	626, 667, 779
TseI	GCWGC	2 cut(s)	155, 348
TspDTI	ATGAA	8 cut(s)	23, 227, 260, 290, 326, 461, 518, 801
TspGWI	ACGGA	1 cut(s)	881
Vha464I	CTTAAG	1 cut(s)	778
VpaK11BI	GGWCC	1 cut(s)	677
XapI	RAATTY	3 cut(s)	184, 338, 808
XbaI	TCTAGA	1 cut(s)	297
XceI	RCATGY	2 cut(s)	348, 517
XmnI	GAANNNNTTC	1 cut(s)	251
XspI	CTAG	2 cut(s)	298, 401
Zsp2I	ATGCAT	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.