pycom13g06940

starch biosynthetic process

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
4599204 .. 4602286
3083 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g06940.5

Sequence Viewer

Length: 1578 bp
ATGCTCTCTTCCACCACCGCCGCGAACCACCTGATCCTCCCGCCCTCCTCCTCCCCAGTTGTCGTCCCTCGCGCCTTTCCCTCGATTCTTTTCATCGGTAATTCAAGAGCAATAACCCGGCGGCTGCGGGGTCATCACCCGATGACCGGCTGTTCTTTGATTCTAGGGTTTTCAGAGTCGAGACAAGGGTACAATTACAACGGGTTGTATTGTGGGTCTTCTGGGTTTGCGAGCCGGTGTAAAGATTGGGATGGCGAGGGGGATGATTTCACCTTGGAAGCTGAGATTCTGGAGTTCATGAAGAGCTCCAAGAAGCCCCAGGCGTTTCCGAGCAAGAAGGAGCTGTTGGAAGCTGGGAGAGAAGATTTGGTCGATGCAATTACGAAGAAAGGCGGTTGGCTTTCGTTGGGTTGGGATTTGGATGACGAAGATAGAGCTCAAGAACGCAACTTCAGGAATTGGGATTCCACATTGGAATTCGACAGCGGTGCCTCCAGCGGCAATCAAACTGGGATTTCCGGCGTGGGTTCTTCGATTCTTGATGATTCTTCTCAAGCAGCATCGTCCTCTGGTCGATCACTAGAAGCCGCTACAACAGAGGACGATACTGGAATTGCGGGTATATTGAATCGATTGGAGAAACAGAGAAATTTGACGCTTGGTTTTACTTTGAGAGAGAAAGAAGACTCAGCTGATGATTTGCTGGCCTTGACAAGCAGCGGACCTGCATCAGTAAACCCCACCAAAGCCATTCTTAACGATTCAAGAGACAGGTCTAACCACAACAGATCTCTTTCAAACATTGATGTGCTAAGAGACTCACCCAGACCTGACATGTGGAGAACTTGGAGCACCCAGAGGGCTGGAGTTTCGGATCTGGATTTTGAAGCTGATGAATTTTCTTGTGATAAAACGGAAGTGTCAGAGGATGTTTCAAGAGATCGCATATTTCAACTAAGAGCAGGAACTAATGAACCCGATCGAAGGATTGAACTGGATTCTAATCAGAAAGGGATCAATCACGAGCAAATACGTGGTCACATCAAGCACCTTGAATCAGAGCTCATCTCTGCACTTCGCTTGTTGAGGTCTAAAACCGATGAAGCTGCATCACAGGAGGGTCAAGAAAGCAACTCTGCAGATTTGCAGAACCTTGCTGATGCTTGGGAGTTTCAGGAAAATGAGATTATGCATGCCTGGGACAAATTGCGTTCAACACGTGCAAAGATAGCTGTTTTAGAAGGAAAGGTGGCAATGGCAATAATCGAAGCGCAAAAGATTGTGGAGGAGAAACAGAAGCGGATTGGTGATGCTCGCAAGGCCTTACGACTTCTTCGCACTGCTTGCATTGTTTGGCCAAATTCAGCCTCAGAAGTGCTCATAGCTGGATCATATGATGGTTGGACCACCCAGAGAAAGATGGAGAAGTCGAGACCAGGAGTCTTCTCTTTGTGCCTTAAATTGTATCCGGGCAGATACGAGATTAAGTTCATTGCCGATGGTGAATGGCGGGTTGATCCCCTACGCCCAATTGTTCGCAACAACGGGTATGAAAACAACGTCCTGATCATAACATAA

Protein Analysis

526

Amino Acids

58.43

Weight (kDa)

5.4

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 733
AccB1I GGYRCC 1 cut(s) 488
AccII CGCG 2 cut(s) 23, 72
AclWI GGATC 5 cut(s) 28, 882, 1022, 1396, 1511
AcoI YGGCCR 1 cut(s) 1355
AcsI RAATTY 4 cut(s) 476, 649, 896, 1360
AcuI CTGAAG 1 cut(s) 436
AcvI CACGTG 1 cut(s) 1220
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 2 cut(s) 146, 984
AflIII ACRYGT 2 cut(s) 834, 1217
AhdI GACNNNNNGTC 1 cut(s) 1439
AjnI CCWGG 3 cut(s) 318, 1196, 1435
AjuI GAANNNNNNNTTGG 2 cut(s) 329, 361
Alw21I GWGCWC 5 cut(s) 308, 439, 854, 1065, 1380
Alw26I GTCTC 4 cut(s) 175, 762, 810, 1426
AlwI GGATC 5 cut(s) 28, 882, 1022, 1396, 1511
AoxI GGCC 3 cut(s) 705, 1320, 1355
ApeKI GCWGC 4 cut(s) 124, 557, 717, 1106
ApoI RAATTY 4 cut(s) 476, 649, 896, 1360
ArsI GACNNNNNNTTYG 2 cut(s) 1021, 1053
AspLEI GCGC 2 cut(s) 74, 1273
AspS9I GGNCC 2 cut(s) 722, 1404
AsuC2I CCSGG 2 cut(s) 118, 1470
AsuHPI GGTGA 5 cut(s) 128, 262, 813, 1319, 1514
AvaII GGWCC 2 cut(s) 722, 1404
BalI TGGCCA 1 cut(s) 1357
BanI GGYRCC 1 cut(s) 488
BanII GRGCYC 3 cut(s) 308, 439, 1065
BauI CACGAG 1 cut(s) 1022
BbrPI CACGTG 1 cut(s) 1220
BbsI GAAGAC 3 cut(s) 210, 690, 1435
Bbv12I GWGCWC 5 cut(s) 308, 439, 854, 1065, 1380
BbvI GCAGC 4 cut(s) 111, 569, 729, 1093
BccI CCATC 4 cut(s) 245, 1391, 1414, 1493
BcgI CGANNNNNNTGC 4 cut(s) 470, 504, 1088, 1122
BciT130I CCWGG 3 cut(s) 320, 1198, 1437
BciVI GTATCC 1 cut(s) 1476
BclI TGATCA 1 cut(s) 1566
BcnI CCSGG 2 cut(s) 118, 1470
BcoDI GTCTC 4 cut(s) 175, 762, 810, 1426
BfaI CTAG 2 cut(s) 164, 581
BfmI CTRYAG 1 cut(s) 1137
BfuAI ACCTGC 1 cut(s) 733
BfuI GTATCC 1 cut(s) 1476
BglII AGATCT 1 cut(s) 788
BisI GCNGC 8 cut(s) 21, 122, 125, 499, 558, 588, 718, 1107
BlsI GCNGC 8 cut(s) 22, 123, 126, 500, 559, 589, 719, 1108
Bme1390I CCNGG 5 cut(s) 118, 320, 1198, 1437, 1470
Bme18I GGWCC 2 cut(s) 722, 1404
BmeRI GACNNNNNGTC 1 cut(s) 1439
BmgT120I GGNCC 2 cut(s) 722, 1404
BmiI GGNNCC 1 cut(s) 490
BmrFI CCNGG 5 cut(s) 118, 320, 1198, 1437, 1470
BmrI ACTGGG 2 cut(s) 50, 519
BmsI GCATC 6 cut(s) 364, 569, 737, 1118, 1150, 1300
BmuI ACTGGG 2 cut(s) 50, 519
BpiI GAAGAC 3 cut(s) 210, 690, 1435
BplI GAGNNNNNCTC 2 cut(s) 1052, 1084
BpmI CTGGAG 3 cut(s) 311, 478, 885
BpuEI CTTGAG 2 cut(s) 423, 537
BpuMI CCSGG 2 cut(s) 118, 1470
Bsa29I ATCGAT 1 cut(s) 631
BsaAI YACGTR 2 cut(s) 1034, 1220
BsaBI GATNNNNATC 1 cut(s) 1002
BsaI GGTCTC 1 cut(s) 1426
BsaJI CCNNGG 3 cut(s) 273, 318, 1197
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 984
Bse118I RCCGGY 2 cut(s) 146, 234
Bse1I ACTGG 4 cut(s) 56, 514, 613, 999
Bse3DI GCAATG 2 cut(s) 1260, 1491
Bse8I GATNNNNATC 1 cut(s) 1002
BseBI CCWGG 3 cut(s) 320, 1198, 1437
BseCI ATCGAT 1 cut(s) 631
BseDI CCNNGG 3 cut(s) 273, 318, 1197
BseGI GGATG 4 cut(s) 256, 268, 427, 934
BseJI GATNNNNATC 1 cut(s) 1002
BseLI CCNNNNNNNGG 2 cut(s) 146, 984
BseMI GCAATG 2 cut(s) 1260, 1491
BseMII CTCAG 3 cut(s) 273, 702, 1383
BseNI ACTGG 4 cut(s) 56, 514, 613, 999
BseRI GAGGAG 3 cut(s) 37, 40, 1301
BseXI GCAGC 4 cut(s) 111, 569, 729, 1093
BseYI CCCAGC 1 cut(s) 353
BsgI GTGCAG 1 cut(s) 1056
Bsh1236I CGCG 2 cut(s) 23, 72
Bsh1285I CGRYCG 1 cut(s) 982
BshFI GGCC 3 cut(s) 707, 1322, 1357
BshNI GGYRCC 1 cut(s) 488
BshVI ATCGAT 1 cut(s) 631
BsiEI CGRYCG 1 cut(s) 982
BsiHKAI GWGCWC 5 cut(s) 308, 439, 854, 1065, 1380
BsiSI CCGG 5 cut(s) 118, 147, 235, 519, 1469
BslFI GGGAC 2 cut(s) 50, 1214
BslI CCNNNNNNNGG 2 cut(s) 146, 984
BsmAI GTCTC 4 cut(s) 175, 762, 810, 1426
BsmFI GGGAC 2 cut(s) 50, 1214
BsnI GGCC 3 cut(s) 707, 1322, 1357
Bso31I GGTCTC 1 cut(s) 1426
Bsp1286I GDGCHC 5 cut(s) 308, 439, 854, 1065, 1380
BspANI GGCC 3 cut(s) 707, 1322, 1357
BspCNI CTCAG 3 cut(s) 274, 701, 1382
BspDI ATCGAT 1 cut(s) 631
BspFNI CGCG 2 cut(s) 23, 72
BspHI TCATGA 1 cut(s) 297
BspLI GGNNCC 1 cut(s) 490
BspMAI CTGCAG 1 cut(s) 1141
BspMI ACCTGC 1 cut(s) 733
BspPI GGATC 5 cut(s) 28, 882, 1022, 1396, 1511
BspQI GCTCTTC 1 cut(s) 296
BspT107I GGYRCC 1 cut(s) 488
BspTNI GGTCTC 1 cut(s) 1426
BsrDI GCAATG 2 cut(s) 1260, 1491
BsrFI RCCGGY 2 cut(s) 146, 234
BsrI ACTGG 4 cut(s) 56, 514, 613, 999
BssAI RCCGGY 2 cut(s) 146, 234
BssECI CCNNGG 3 cut(s) 273, 318, 1197
BssSI CACGAG 1 cut(s) 1022
BssT1I CCWWGG 1 cut(s) 273
Bst2BI CACGAG 1 cut(s) 1022
Bst2UI CCWGG 3 cut(s) 320, 1198, 1437
Bst6I CTCTTC 2 cut(s) 13, 296
BstAPI GCANNNNNTGC 1 cut(s) 1344
BstBAI YACGTR 2 cut(s) 1034, 1220
BstC8I GCNNGC 5 cut(s) 232, 705, 1194, 1315, 1345
BstDEI CTNAG 5 cut(s) 282, 688, 812, 956, 1369
BstF5I GGATG 4 cut(s) 256, 268, 427, 934
BstFNI CGCG 2 cut(s) 23, 72
BstHHI GCGC 2 cut(s) 74, 1273
BstMAI GTCTC 4 cut(s) 175, 762, 810, 1426
BstMCI CGRYCG 1 cut(s) 982
BstMWI GCNNNNNNNGC 3 cut(s) 1229, 1319, 1344
BstNI CCWGG 3 cut(s) 320, 1198, 1437
BstNSI RCATGY 2 cut(s) 838, 1196
BstSCI CCNGG 5 cut(s) 116, 318, 1196, 1435, 1468
BstSFI CTRYAG 1 cut(s) 1137
BstUI CGCG 2 cut(s) 23, 72
BstV1I GCAGC 4 cut(s) 111, 569, 729, 1093
BstV2I GAAGAC 3 cut(s) 210, 690, 1435
BstX2I RGATCY 2 cut(s) 788, 874
BstXI CCANNNNNNTGG 1 cut(s) 863
BstYI RGATCY 2 cut(s) 788, 874
Bsu15I ATCGAT 1 cut(s) 631
BsuI GTATCC 1 cut(s) 1476
BsuRI GGCC 3 cut(s) 707, 1322, 1357
BsuTUI ATCGAT 1 cut(s) 631
BtsCI GGATG 4 cut(s) 256, 268, 427, 934
BtsI GCAGTG 1 cut(s) 1338
BtsIMutI CAGTG 1 cut(s) 1338
BveI ACCTGC 1 cut(s) 733
Cac8I GCNNGC 5 cut(s) 232, 705, 1194, 1315, 1345
CciI TCATGA 1 cut(s) 297
CfoI GCGC 2 cut(s) 74, 1273
Cfr10I RCCGGY 2 cut(s) 146, 234
Cfr13I GGNCC 2 cut(s) 722, 1404
ClaI ATCGAT 1 cut(s) 631
CseI GACGC 1 cut(s) 664
Csp6I GTAC 1 cut(s) 190
CviAII CATG 3 cut(s) 298, 835, 1193
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 5 cut(s) 282, 688, 812, 956, 1369
DriI GACNNNNNGTC 1 cut(s) 1439
EaeI YGGCCR 1 cut(s) 1355
Eam1104I CTCTTC 2 cut(s) 13, 296
Eam1105I GACNNNNNGTC 1 cut(s) 1439
EarI CTCTTC 2 cut(s) 13, 296
Ecl136II GAGCTC 3 cut(s) 306, 437, 1063
Eco130I CCWWGG 1 cut(s) 273
Eco147I AGGCCT 1 cut(s) 1322
Eco24I GRGCYC 3 cut(s) 308, 439, 1065
Eco31I GGTCTC 1 cut(s) 1426
Eco47I GGWCC 2 cut(s) 722, 1404
Eco53kI GAGCTC 3 cut(s) 306, 437, 1063
Eco57I CTGAAG 1 cut(s) 436
Eco72I CACGTG 1 cut(s) 1220
EcoICRI GAGCTC 3 cut(s) 306, 437, 1063
EcoRI GAATTC 1 cut(s) 476
EcoRII CCWGG 3 cut(s) 318, 1196, 1435
EcoT14I CCWWGG 1 cut(s) 273
EcoT22I ATGCAT 1 cut(s) 1194
EcoT38I GRGCYC 3 cut(s) 308, 439, 1065
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 3 cut(s) 301, 838, 1196
FalI AAGNNNNNCTT 2 cut(s) 738, 770
FaqI GGGAC 2 cut(s) 50, 1214
FatI CATG 3 cut(s) 297, 834, 1192
FauI CCCGC 4 cut(s) 48, 120, 610, 1503
FauNDI CATATG 1 cut(s) 1393
FbaI TGATCA 1 cut(s) 1566
Fnu4HI GCNGC 8 cut(s) 21, 122, 125, 499, 558, 588, 718, 1107
FokI GGATG 4 cut(s) 263, 275, 434, 941
FriOI GRGCYC 3 cut(s) 308, 439, 1065
Fsp4HI GCNGC 8 cut(s) 21, 122, 125, 499, 558, 588, 718, 1107
FspBI CTAG 2 cut(s) 164, 581
GlaI GCGC 2 cut(s) 73, 1272
GluI GCNGC 8 cut(s) 21, 122, 125, 499, 558, 588, 718, 1107
GsaI CCCAGC 1 cut(s) 357
GsuI CTGGAG 3 cut(s) 311, 478, 885
HaeIII GGCC 3 cut(s) 707, 1322, 1357
HapII CCGG 5 cut(s) 118, 147, 235, 519, 1469
HgaI GACGC 1 cut(s) 664
HhaI GCGC 2 cut(s) 74, 1273
Hin1II CATG 3 cut(s) 301, 838, 1196
Hin6I GCGC 2 cut(s) 72, 1271
HinP1I GCGC 2 cut(s) 72, 1271
HpaII CCGG 5 cut(s) 118, 147, 235, 519, 1469
HphI GGTGA 5 cut(s) 128, 262, 813, 1319, 1514
Hpy166II GTNNAC 1 cut(s) 736
Hpy188I TCNGA 7 cut(s) 175, 330, 874, 925, 1008, 1060, 1372
Hpy8I GTNNAC 1 cut(s) 736
HpyAV CCTTC 3 cut(s) 331, 978, 1235
HpyCH4IV ACGT 3 cut(s) 1033, 1219, 1560
HpyCH4V TGCA 9 cut(s) 377, 728, 1073, 1109, 1139, 1147, 1192, 1223, 1347
HpyF10VI GCNNNNNNNGC 3 cut(s) 1229, 1319, 1344
HpyF3I CTNAG 5 cut(s) 282, 688, 812, 956, 1369
HpySE526I ACGT 3 cut(s) 1033, 1219, 1560
Hsp92II CATG 3 cut(s) 301, 838, 1196
HspAI GCGC 2 cut(s) 72, 1271
Ksp22I TGATCA 1 cut(s) 1566
LguI GCTCTTC 1 cut(s) 296
LmnI GCTCC 3 cut(s) 311, 340, 849
Lsp1109I GCAGC 4 cut(s) 111, 569, 729, 1093
LweI GCATC 6 cut(s) 364, 569, 737, 1118, 1150, 1300
MaeI CTAG 2 cut(s) 164, 581
MaeII ACGT 3 cut(s) 1033, 1219, 1560
MaeIII GTNAC 1 cut(s) 1037
MfeI CAATTG 1 cut(s) 1530
MflI RGATCY 2 cut(s) 788, 874
MhlI GDGCHC 5 cut(s) 308, 439, 854, 1065, 1380
MlsI TGGCCA 1 cut(s) 1357
MluNI TGGCCA 1 cut(s) 1357
MlyI GAGTC 4 cut(s) 185, 680, 812, 1449
MmeI TCCRAC 2 cut(s) 327, 1382
Mox20I TGGCCA 1 cut(s) 1357
Mph1103I ATGCAT 1 cut(s) 1194
MscI TGGCCA 1 cut(s) 1357
MseI TTAA 3 cut(s) 756, 1458, 1485
MslI CAYNNNNRTG 1 cut(s) 806
Msp20I TGGCCA 1 cut(s) 1357
MspA1I CMGCKG 4 cut(s) 486, 498, 692, 720
MspI CCGG 5 cut(s) 118, 147, 235, 519, 1469
MspR9I CCNGG 5 cut(s) 118, 320, 1198, 1437, 1470
MunI CAATTG 1 cut(s) 1530
MvaI CCWGG 3 cut(s) 320, 1198, 1437
MvnI CGCG 2 cut(s) 23, 72
MwoI GCNNNNNNNGC 3 cut(s) 1229, 1319, 1344
NciI CCSGG 2 cut(s) 118, 1470
NdeI CATATG 1 cut(s) 1393
NlaIII CATG 3 cut(s) 301, 838, 1196
NlaIV GGNNCC 1 cut(s) 490
NmuCI GTSAC 1 cut(s) 1037
NsiI ATGCAT 1 cut(s) 1194
NspI RCATGY 2 cut(s) 838, 1196
PaeI GCATGC 1 cut(s) 1196
PagI TCATGA 1 cut(s) 297
PceI AGGCCT 1 cut(s) 1322
PciI ACATGT 1 cut(s) 834
PciSI GCTCTTC 1 cut(s) 296
PkrI GCNGC 8 cut(s) 22, 123, 126, 500, 559, 589, 719, 1108
Ple19I CGATCG 1 cut(s) 982
PleI GAGTC 4 cut(s) 184, 680, 812, 1448
PmaCI CACGTG 1 cut(s) 1220
PmlI CACGTG 1 cut(s) 1220
PpsI GAGTC 4 cut(s) 184, 680, 812, 1448
Ppu21I YACGTR 2 cut(s) 1034, 1220
PscI ACATGT 1 cut(s) 834
Psp124BI GAGCTC 3 cut(s) 308, 439, 1065
Psp6I CCWGG 3 cut(s) 318, 1196, 1435
PspCI CACGTG 1 cut(s) 1220
PspFI CCCAGC 1 cut(s) 353
PspGI CCWGG 3 cut(s) 318, 1196, 1435
PspN4I GGNNCC 1 cut(s) 490
PspPI GGNCC 2 cut(s) 722, 1404
PstI CTGCAG 1 cut(s) 1141
PsuI RGATCY 2 cut(s) 788, 874
PvuI CGATCG 1 cut(s) 982
PvuII CAGCTG 1 cut(s) 692
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
RseI CAYNNNNRTG 1 cut(s) 806
SacI GAGCTC 3 cut(s) 308, 439, 1065
SapI GCTCTTC 1 cut(s) 296
SaqAI TTAA 3 cut(s) 756, 1458, 1485
SatI GCNGC 8 cut(s) 21, 122, 125, 499, 558, 588, 718, 1107
Sau96I GGNCC 2 cut(s) 722, 1404
SchI GAGTC 4 cut(s) 185, 680, 812, 1449
ScrFI CCNGG 5 cut(s) 118, 320, 1198, 1437, 1470
SduI GDGCHC 5 cut(s) 308, 439, 854, 1065, 1380
SfaNI GCATC 6 cut(s) 364, 569, 737, 1118, 1150, 1300
SfcI CTRYAG 1 cut(s) 1137
SinI GGWCC 2 cut(s) 722, 1404
SmiMI CAYNNNNRTG 1 cut(s) 806
SmlI CTYRAG 2 cut(s) 438, 552
SmoI CTYRAG 2 cut(s) 438, 552
SphI GCATGC 1 cut(s) 1196
SseBI AGGCCT 1 cut(s) 1322
SspMI CTAG 2 cut(s) 164, 581
SstI GAGCTC 3 cut(s) 308, 439, 1065
StuI AGGCCT 1 cut(s) 1322
StyD4I CCNGG 5 cut(s) 116, 318, 1196, 1435, 1468
StyI CCWWGG 1 cut(s) 273
TaiI ACGT 3 cut(s) 1036, 1222, 1563
TauI GCSGC 4 cut(s) 23, 124, 501, 590
Tru1I TTAA 3 cut(s) 756, 1458, 1485
Tru9I TTAA 3 cut(s) 756, 1458, 1485
TscAI CASTG 1 cut(s) 1345
TseFI GTSAC 1 cut(s) 1037
TseI GCWGC 4 cut(s) 124, 557, 717, 1106
Tsp45I GTSAC 1 cut(s) 1037
TspDTI ATGAA 8 cut(s) 82, 286, 314, 909, 987, 1116, 1480, 1566
TspGWI ACGGA 1 cut(s) 929
TspRI CASTG 1 cut(s) 1345
VpaK11BI GGWCC 2 cut(s) 722, 1404
XapI RAATTY 4 cut(s) 476, 649, 896, 1360
XceI RCATGY 2 cut(s) 838, 1196
XspI CTAG 2 cut(s) 164, 581
Zsp2I ATGCAT 1 cut(s) 1194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.