AT1G27090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010265
Physical Location & Seq
Reverse (-)
9403753 .. 9406369
2617 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G27090.1

Sequence Viewer

Length: 1263 bp
ATGGCCGCCACTGCTTCCTCCGAAGCTTCTGAAGGACCAGTGATGGGTCTCATCAACAAGCGTCTCCGTGCTCTCCGTAAGAAATACAACCGAATCACTCAAATGGAAGAATCGATTTCTCAAGGCAAAACCCTAAACAAGGAGCAAGAAGAAGTCCTCCGCTCTAAACCTGCCGTCGTCATCCTAATCGACGAGCTTGAAAAGATCCGTGCTCCTCTCTCCGCCGCTGTGACAGAGGAAATCAGCCTCGCTACTCAGCTTAACCGTGCTTCATCCGATCAAACCACCGCATCTGAGCAAAAGGAAGTCACTGATATCCCGCAGGAAGTTAGCGGCGGCGATGATGGCGCTAAGTTGGAGGATCTGGTGAATTTCCTCTACTTTGGTTCACTCTTCGACGTCAAGTCACAGAACGAGTTCACTTCGATAATGTTGACCAGGACTCATGAGAGAAGTTGCTGCTTGTCTTACGATTACGTTACCGATGATGCCACTGATCTCCTCGGCGATCGGGATTTGGATTCTATTTCTCAGCTTTGGAGCCTGATGGTTTCTCGTCCGGTGGATTCAAGCTTATCTCACAAGAACGCTTTGGAGCGTTGTGTTGAGCACGCTAAGCTATGGTTAGCTAATTCCGAGCAGCCAATCGAATCAAACTGCAATACTTCATATGCTGCATTGAGAGAGAAGTTGAAGAAGATTATGGCGTCTGACTATTTCACCACTACTCCGGAAATGAAAGCTCCGGTTGATGTGGCGGCTGCAGCTGGTAACTATACTTCTTACCAGGTGCCTGTGGACGTGGAGGCTTCAGGGCATTACCAGCAAAAGGAAGAAGATGCATCAAATTCCAAAGAAGTAGAATCAGTTGTTAATGATCAATCTCAACAAGATGAGCATCAAAAGGTTGAGTTAGTGACCGAAGGAGAGGTGGTCCATGGACAGCAAGAACAGGGCTATACTCAGGTGGGAGGAGCAGAGAATGCTAAAAGAGACTATGTGCCACGTGGGTCTTACCAGAACCAAAGAGGTCGTCGAGGTGCTCGAAGAGGTGGTGGTGGCTATCAGAATGGGCGAGGAGGACGAGGTGGTGGTGGTGGCTACCAGAATGGGCGGTACGAATCTTATGATCAATCTGGTGGAAACGGTTATCAAAGGAACTACTACAACAACAGAGGAAGGGGACGTGGTGGTGGTGGTGGTGGAGGAAATGGCCATTCATACAACAACTACCAAGACCCCAATGTTGCTGTTGCGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1618

Protein Analysis

420

Amino Acids

46.02

Weight (kDa)

5.26

Isoelectric Point (pI)

47.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 402
Acc36I ACCTGC 1 cut(s) 178
AccB1I GGYRCC 1 cut(s) 790
AccBSI CCGCTC 1 cut(s) 162
AccIII TCCGGA 1 cut(s) 730
AclWI GGATC 2 cut(s) 199, 369
AcoI YGGCCR 2 cut(s) 3, 1213
AcsI RAATTY 2 cut(s) 370, 847
AcuI CTGAAG 2 cut(s) 51, 795
AcvI CACGTG 1 cut(s) 1007
AcyI GRCGYC 2 cut(s) 399, 707
AfaI GTAC 1 cut(s) 1118
AfiI CCNNNNNNNGG 3 cut(s) 44, 139, 829
AgsI TTSAA 3 cut(s) 200, 570, 694
AhdI GACNNNNNGTC 1 cut(s) 403
AjiI CACGTC 2 cut(s) 802, 1187
AjnI CCWGG 2 cut(s) 437, 786
AluBI AGCT 9 cut(s) 26, 196, 259, 535, 573, 619, 629, 743, 767
AluI AGCT 9 cut(s) 26, 196, 259, 535, 573, 619, 629, 743, 767
Alw21I GWGCWC 4 cut(s) 73, 214, 612, 1045
Alw26I GTCTC 3 cut(s) 53, 68, 987
AlwI GGATC 2 cut(s) 199, 369
Aor13HI TCCGGA 1 cut(s) 730
AoxI GGCC 2 cut(s) 3, 1213
ApeKI GCWGC 5 cut(s) 459, 640, 674, 761, 764
ApoI RAATTY 2 cut(s) 370, 847
ArsI GACNNNNNNTTYG 2 cut(s) 1018, 1050
Asp700I GAANNNNTTC 1 cut(s) 416
AspLEI GCGC 1 cut(s) 350
AspS9I GGNCC 2 cut(s) 35, 934
AsuHPI GGTGA 2 cut(s) 379, 712
AvaII GGWCC 2 cut(s) 35, 934
BalI TGGCCA 1 cut(s) 1215
BanI GGYRCC 1 cut(s) 790
BarI GAAGNNNNNNTAC 2 cut(s) 763, 795
BbrPI CACGTG 1 cut(s) 1007
Bbv12I GWGCWC 4 cut(s) 73, 214, 612, 1045
BbvI GCAGC 5 cut(s) 446, 652, 661, 748, 776
BccI CCATC 3 cut(s) 37, 338, 541
BceAI ACGGC 1 cut(s) 158
BciT130I CCWGG 2 cut(s) 439, 788
BclI TGATCA 2 cut(s) 877, 1129
BcoDI GTCTC 3 cut(s) 53, 68, 987
BfmI CTRYAG 1 cut(s) 762
BfoI RGCGCY 1 cut(s) 351
BfuAI ACCTGC 1 cut(s) 178
BlpI GCTNAGC 1 cut(s) 615
Bme1390I CCNGG 2 cut(s) 439, 788
Bme18I GGWCC 2 cut(s) 35, 934
BmeRI GACNNNNNGTC 1 cut(s) 403
BmgBI CACGTC 2 cut(s) 802, 1187
BmgT120I GGNCC 2 cut(s) 35, 934
BmiI GGNNCC 2 cut(s) 542, 792
BmrFI CCNGG 2 cut(s) 439, 788
BmsI GCATC 5 cut(s) 299, 478, 829, 851, 907
Bpu1102I GCTNAGC 1 cut(s) 615
BpuEI CTTGAG 1 cut(s) 105
Bsa29I ATCGAT 1 cut(s) 113
BsaAI YACGTR 1 cut(s) 1007
BsaBI GATNNNNATC 1 cut(s) 897
BsaHI GRCGYC 2 cut(s) 399, 707
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 502, 937
BsaWI WCCGGW 3 cut(s) 559, 730, 745
BsaXI ACNNNNNCTCC 4 cut(s) 712, 742, 918, 948
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 139, 829
Bse1I ACTGG 1 cut(s) 38
Bse8I GATNNNNATC 1 cut(s) 897
BseAI TCCGGA 1 cut(s) 730
BseBI CCWGG 2 cut(s) 439, 788
BseCI ATCGAT 1 cut(s) 113
BseDI CCNNGG 2 cut(s) 502, 937
BseGI GGATG 2 cut(s) 180, 272
BseJI GATNNNNATC 1 cut(s) 897
BseLI CCNNNNNNNGG 3 cut(s) 44, 139, 829
BseMII CTCAG 4 cut(s) 269, 285, 545, 977
BseNI ACTGG 1 cut(s) 38
BseRI GAGGAG 4 cut(s) 204, 491, 987, 1092
BseXI GCAGC 5 cut(s) 446, 652, 661, 748, 776
Bsh1285I CGRYCG 1 cut(s) 511
BshFI GGCC 2 cut(s) 5, 1215
BshNI GGYRCC 1 cut(s) 790
BshVI ATCGAT 1 cut(s) 113
BsiEI CGRYCG 1 cut(s) 511
BsiHKAI GWGCWC 4 cut(s) 73, 214, 612, 1045
BsiSI CCGG 3 cut(s) 560, 731, 746
BslFI GGGAC 1 cut(s) 1197
BslI CCNNNNNNNGG 3 cut(s) 44, 139, 829
BsmAI GTCTC 3 cut(s) 53, 68, 987
BsmBI CGTCTC 1 cut(s) 68
BsmFI GGGAC 1 cut(s) 1197
BsmI GAATGC 1 cut(s) 988
BsnI GGCC 2 cut(s) 5, 1215
Bso31I GGTCTC 1 cut(s) 53
Bsp1286I GDGCHC 4 cut(s) 73, 214, 612, 1045
Bsp13I TCCGGA 1 cut(s) 730
Bsp143I GATC 7 cut(s) 204, 277, 361, 496, 508, 877, 1129
Bsp1720I GCTNAGC 1 cut(s) 615
Bsp19I CCATGG 1 cut(s) 937
BspANI GGCC 2 cut(s) 5, 1215
BspCNI CTCAG 4 cut(s) 268, 286, 544, 976
BspDI ATCGAT 1 cut(s) 113
BspEI TCCGGA 1 cut(s) 730
BspHI TCATGA 1 cut(s) 445
BspLI GGNNCC 2 cut(s) 542, 792
BspMAI CTGCAG 1 cut(s) 766
BspMI ACCTGC 1 cut(s) 178
BspPI GGATC 2 cut(s) 199, 369
BspT107I GGYRCC 1 cut(s) 790
BspTNI GGTCTC 1 cut(s) 53
BsrBI CCGCTC 1 cut(s) 162
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 2 cut(s) 502, 937
BssMI GATC 7 cut(s) 204, 277, 361, 496, 508, 877, 1129
BssNI GRCGYC 2 cut(s) 399, 707
BssT1I CCWWGG 1 cut(s) 937
Bst2UI CCWGG 2 cut(s) 439, 788
Bst4CI ACNGT 2 cut(s) 266, 1148
Bst6I CTCTTC 2 cut(s) 398, 1042
BstACI GRCGYC 2 cut(s) 399, 707
BstAPI GCANNNNNTGC 1 cut(s) 983
BstBAI YACGTR 1 cut(s) 1007
BstC8I GCNNGC 1 cut(s) 612
BstDEI CTNAG 7 cut(s) 255, 294, 351, 531, 615, 963, 1260
BstDSI CCRYGG 1 cut(s) 937
BstENI CCTNNNNNAGG 1 cut(s) 137
BstF5I GGATG 2 cut(s) 180, 272
BstH2I RGCGCY 1 cut(s) 351
BstHHI GCGC 1 cut(s) 350
BstKTI GATC 7 cut(s) 207, 280, 364, 499, 511, 880, 1132
BstMAI GTCTC 3 cut(s) 53, 68, 987
BstMBI GATC 7 cut(s) 204, 277, 361, 496, 508, 877, 1129
BstMCI CGRYCG 1 cut(s) 511
BstMWI GCNNNNNNNGC 6 cut(s) 11, 345, 616, 764, 823, 983
BstNI CCWGG 2 cut(s) 439, 788
BstSCI CCNGG 2 cut(s) 437, 786
BstSFI CTRYAG 1 cut(s) 762
BstV1I GCAGC 5 cut(s) 446, 652, 661, 748, 776
BstX2I RGATCY 2 cut(s) 204, 361
BstYI RGATCY 2 cut(s) 204, 361
Bsu15I ATCGAT 1 cut(s) 113
BsuRI GGCC 2 cut(s) 5, 1215
BsuTUI ATCGAT 1 cut(s) 113
BtgI CCRYGG 1 cut(s) 937
BtgZI GCGATG 1 cut(s) 354
BtrI CACGTC 2 cut(s) 802, 1187
BtsCI GGATG 2 cut(s) 180, 272
BtsI GCAGTG 1 cut(s) 9
BtsIMutI CAGTG 4 cut(s) 9, 45, 309, 492
BveI ACCTGC 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 612
CciI TCATGA 1 cut(s) 445
CfoI GCGC 1 cut(s) 350
Cfr13I GGNCC 2 cut(s) 35, 934
ClaI ATCGAT 1 cut(s) 113
CseI GACGC 3 cut(s) 50, 696, 1245
CsiI ACCWGGT 1 cut(s) 786
Csp6I GTAC 1 cut(s) 1117
CviAII CATG 2 cut(s) 446, 938
CviQI GTAC 1 cut(s) 1117
DdeI CTNAG 7 cut(s) 255, 294, 351, 531, 615, 963, 1260
DpnI GATC 7 cut(s) 206, 279, 363, 498, 510, 879, 1131
DpnII GATC 7 cut(s) 204, 277, 361, 496, 508, 877, 1129
DriI GACNNNNNGTC 1 cut(s) 403
EaeI YGGCCR 2 cut(s) 3, 1213
Eam1104I CTCTTC 2 cut(s) 398, 1042
Eam1105I GACNNNNNGTC 1 cut(s) 403
EarI CTCTTC 2 cut(s) 398, 1042
EciI GGCGGA 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 937
Eco31I GGTCTC 1 cut(s) 53
Eco32I GATATC 1 cut(s) 316
Eco47I GGWCC 2 cut(s) 35, 934
Eco57I CTGAAG 2 cut(s) 51, 795
Eco72I CACGTG 1 cut(s) 1007
EcoNI CCTNNNNNAGG 1 cut(s) 137
EcoRII CCWGG 2 cut(s) 437, 786
EcoRV GATATC 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 937
EcoT22I ATGCAT 1 cut(s) 844
ErhI CCWWGG 1 cut(s) 937
Esp3I CGTCTC 1 cut(s) 68
FaeI CATG 2 cut(s) 449, 941
FaqI GGGAC 1 cut(s) 1197
FatI CATG 2 cut(s) 445, 937
FauI CCCGC 1 cut(s) 327
FauNDI CATATG 1 cut(s) 670
FbaI TGATCA 2 cut(s) 877, 1129
FokI GGATG 2 cut(s) 167, 259
GlaI GCGC 1 cut(s) 349
HaeII RGCGCY 1 cut(s) 351
HaeIII GGCC 2 cut(s) 5, 1215
HapII CCGG 3 cut(s) 560, 731, 746
HgaI GACGC 3 cut(s) 50, 696, 1245
HhaI GCGC 1 cut(s) 350
Hin1I GRCGYC 2 cut(s) 399, 707
Hin1II CATG 2 cut(s) 449, 941
Hin6I GCGC 1 cut(s) 348
HinP1I GCGC 1 cut(s) 348
HincII GTYRAC 1 cut(s) 435
HindII GTYRAC 1 cut(s) 435
HindIII AAGCTT 2 cut(s) 24, 571
HinfI GANTC 8 cut(s) 93, 110, 442, 521, 566, 650, 863, 1121
HpaII CCGG 3 cut(s) 560, 731, 746
HphI GGTGA 2 cut(s) 379, 712
Hpy166II GTNNAC 4 cut(s) 389, 420, 435, 799
Hpy188I TCNGA 7 cut(s) 22, 31, 277, 295, 637, 712, 1068
Hpy188III TCNNGA 3 cut(s) 446, 512, 731
Hpy8I GTNNAC 4 cut(s) 389, 420, 435, 799
Hpy99I CGWCG 4 cut(s) 179, 194, 401, 1038
HpyAV CCTTC 3 cut(s) 26, 917, 1173
HpyCH4III ACNGT 2 cut(s) 266, 1148
HpyCH4IV ACGT 5 cut(s) 399, 477, 801, 1006, 1186
HpyCH4V TGCA 4 cut(s) 660, 677, 764, 842
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 345, 616, 764, 823, 983
HpyF3I CTNAG 7 cut(s) 255, 294, 351, 531, 615, 963, 1260
HpySE526I ACGT 5 cut(s) 399, 477, 801, 1006, 1186
Hsp92I GRCGYC 2 cut(s) 399, 707
Hsp92II CATG 2 cut(s) 449, 941
HspAI GCGC 1 cut(s) 348
Kpn2I TCCGGA 1 cut(s) 730
Ksp22I TGATCA 2 cut(s) 877, 1129
Kzo9I GATC 7 cut(s) 204, 277, 361, 496, 508, 877, 1129
LmnI GCTCC 6 cut(s) 142, 217, 540, 595, 748, 974
Lsp1109I GCAGC 5 cut(s) 446, 652, 661, 748, 776
LweI GCATC 5 cut(s) 299, 478, 829, 851, 907
MabI ACCWGGT 1 cut(s) 786
MaeII ACGT 5 cut(s) 399, 477, 801, 1006, 1186
MaeIII GTNAC 6 cut(s) 229, 307, 405, 478, 770, 916
MalI GATC 7 cut(s) 206, 279, 363, 498, 510, 879, 1131
MbiI CCGCTC 1 cut(s) 162
MboI GATC 7 cut(s) 204, 277, 361, 496, 508, 877, 1129
MboII GAAGA 8 cut(s) 119, 161, 385, 706, 709, 845, 848, 1059
MflI RGATCY 2 cut(s) 204, 361
MhlI GDGCHC 4 cut(s) 73, 214, 612, 1045
MlsI TGGCCA 1 cut(s) 1215
MluCI AATT 3 cut(s) 370, 631, 847
MluNI TGGCCA 1 cut(s) 1215
MlyI GAGTC 1 cut(s) 436
MmeI TCCRAC 1 cut(s) 336
Mox20I TGGCCA 1 cut(s) 1215
Mph1103I ATGCAT 1 cut(s) 844
MroI TCCGGA 1 cut(s) 730
MroXI GAANNNNTTC 1 cut(s) 416
MscI TGGCCA 1 cut(s) 1215
MseI TTAA 2 cut(s) 261, 873
MslI CAYNNNNRTG 1 cut(s) 101
Msp20I TGGCCA 1 cut(s) 1215
MspA1I CMGCKG 2 cut(s) 227, 767
MspI CCGG 3 cut(s) 560, 731, 746
MspR9I CCNGG 2 cut(s) 439, 788
Mva1269I GAATGC 1 cut(s) 988
MvaI CCWGG 2 cut(s) 439, 788
MwoI GCNNNNNNNGC 6 cut(s) 11, 345, 616, 764, 823, 983
NcoI CCATGG 1 cut(s) 937
NdeI CATATG 1 cut(s) 670
NdeII GATC 7 cut(s) 204, 277, 361, 496, 508, 877, 1129
NlaIII CATG 2 cut(s) 449, 941
NlaIV GGNNCC 2 cut(s) 542, 792
NmeAIII GCCGAG 1 cut(s) 483
NmuCI GTSAC 4 cut(s) 229, 307, 405, 916
NsiI ATGCAT 1 cut(s) 844
PagI TCATGA 1 cut(s) 445
PcsI WCGNNNNNNNCGW 1 cut(s) 1042
PctI GAATGC 1 cut(s) 988
PdmI GAANNNNTTC 1 cut(s) 416
PfeI GAWTC 7 cut(s) 93, 110, 521, 566, 650, 863, 1121
Ple19I CGATCG 1 cut(s) 511
PleI GAGTC 1 cut(s) 436
PmaCI CACGTG 1 cut(s) 1007
PmlI CACGTG 1 cut(s) 1007
PpsI GAGTC 1 cut(s) 436
Ppu21I YACGTR 1 cut(s) 1007
Psp6I CCWGG 2 cut(s) 437, 786
PspCI CACGTG 1 cut(s) 1007
PspGI CCWGG 2 cut(s) 437, 786
PspN4I GGNNCC 2 cut(s) 542, 792
PspPI GGNCC 2 cut(s) 35, 934
PstI CTGCAG 1 cut(s) 766
PsuI RGATCY 2 cut(s) 204, 361
PvuI CGATCG 1 cut(s) 511
PvuII CAGCTG 1 cut(s) 767
RsaI GTAC 1 cut(s) 1118
RsaNI GTAC 1 cut(s) 1117
RseI CAYNNNNRTG 1 cut(s) 101
SaqAI TTAA 2 cut(s) 261, 873
Sau3AI GATC 7 cut(s) 204, 277, 361, 496, 508, 877, 1129
Sau96I GGNCC 2 cut(s) 35, 934
SchI GAGTC 1 cut(s) 436
ScrFI CCNGG 2 cut(s) 439, 788
SduI GDGCHC 4 cut(s) 73, 214, 612, 1045
SexAI ACCWGGT 1 cut(s) 786
SfaNI GCATC 5 cut(s) 299, 478, 829, 851, 907
SfcI CTRYAG 1 cut(s) 762
SinI GGWCC 2 cut(s) 35, 934
SmiMI CAYNNNNRTG 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 120
SmoI CTYRAG 1 cut(s) 120
Sse9I AATT 3 cut(s) 370, 631, 847
StyD4I CCNGG 2 cut(s) 437, 786
StyI CCWWGG 1 cut(s) 937
TaaI ACNGT 2 cut(s) 266, 1148
TaiI ACGT 5 cut(s) 402, 480, 804, 1009, 1189
TaqI TCGA 7 cut(s) 113, 189, 396, 425, 648, 1036, 1045
TaqII GACCGA 1 cut(s) 935
TasI AATT 3 cut(s) 370, 631, 847
TauI GCSGC 5 cut(s) 8, 227, 336, 339, 761
TfiI GAWTC 7 cut(s) 93, 110, 521, 566, 650, 863, 1121
Tru1I TTAA 2 cut(s) 261, 873
Tru9I TTAA 2 cut(s) 261, 873
TscAI CASTG 4 cut(s) 16, 45, 316, 499
TseFI GTSAC 4 cut(s) 229, 307, 405, 916
TseI GCWGC 5 cut(s) 459, 640, 674, 761, 764
Tsp45I GTSAC 4 cut(s) 229, 307, 405, 916
TspDTI ATGAA 4 cut(s) 261, 657, 752, 1209
TspGWI ACGGA 3 cut(s) 56, 65, 197
TspRI CASTG 4 cut(s) 16, 45, 316, 499
VpaK11BI GGWCC 2 cut(s) 35, 934
XagI CCTNNNNNAGG 1 cut(s) 137
XapI RAATTY 2 cut(s) 370, 847
XmnI GAANNNNTTC 1 cut(s) 416
ZraI GACGTC 1 cut(s) 400
Zsp2I ATGCAT 1 cut(s) 844
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.