Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0010265

Physical Location & Seq

Genomic Coordinates Forward (+)

4633378 .. 4636132

Gene Structure 2755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g06980.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCTTCGGACTACTTTACCACAACGCCGCAAATGAAAGAAGTTTCGGCCGCAGCAGCTGCAGGGAACTATGCTCCATTTCAGGTGCCGGTACATGAGCCTATCTTGCCTGTTGAGGTGCCTGTCCAGTTGGATTTCCAGCAGAAGGTTGAAGACACTGCAAATTTTCAAGGACATGATACTGGTGATAGCCAATCGAGTCATACAGAGGAACTTCAGAAGGATGAAGTAGTGAAAGAAAATCAGTCGGAGGCTGTCTCAGCTCAACAAGAACAGGTTCAGCTAGAAACAGAAGCAGACTACAACCAGAGAGATGTAGAATTCGAGCAACAGCATGCTTCTCGCAGACCATACCAAAACCAAAGAGGTGGTCGTGGGGGAGGTGGCCGTAGAGGTTACGCTAATGGCCGTGGAGGTCGAGGTAATGGCAGAGGAGGTGGTTCCTTCCAGAATGGTCGCAACCAGTATTACGACCAGCCAGGAAGTTATTATCCAAGACCCTACTATAACAATAGGGGAAGGGGCGGTAGGGGTGGCGGGTCCTCATACAACCACCAAGGTGCAGCTCAAGAGGGTCATACCTCGGCCAACGTTGGAGTTGCTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1618

Protein Analysis

203

Amino Acids

22.02

Weight (kDa)

5.68

Isoelectric Point (pI)

49.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27090
fragaria_vesca	FvH4_4g35680 FvH4_4g35680
malus_domestica	MD13G1080700.v1.1 MD16G1080200.v1.1
prunus_persica	Prupe.1G265800_v2.0.a1
pyrus_communis	pycom13g06980 pycom16g06940
rosa_chinensis	RchiOBHm_Chr4g0445281
rosa_laevigata	RLG00000005752
rosa_multiflora	Rmu_co8092570.1_g000001 Rmu_sc0000050.1_g000024 Rmu_sc0007093.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385790
rosa_rugosa	Rorug04G0360000 Rorug04G0360100
rosa_samantha	Rh4AG421500 Rh4BG433400 Rh4CG448100 Rh4DG429400
rosa_wichuraiana	Rw4G036150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	85, 118
AciI	CCGC	4 cut(s)	29, 51, 525, 537
AclI	AACGTT	1 cut(s)	591
AcoI	YGGCCR	4 cut(s)	48, 385, 406, 585
AcsI	RAATTY	2 cut(s)	163, 320
AcuI	CTGAAG	1 cut(s)	200
AfaI	GTAC	1 cut(s)	93
AfiI	CCNNNNNNNGG	1 cut(s)	145
AgsI	TTSAA	2 cut(s)	152, 170
AjnI	CCWGG	1 cut(s)	478
AleI	CACNNNNGTG	1 cut(s)	558
AluBI	AGCT	4 cut(s)	59, 263, 283, 566
AluI	AGCT	4 cut(s)	59, 263, 283, 566
Alw26I	GTCTC	1 cut(s)	262
AlwNI	CAGNNNCTG	1 cut(s)	59
AoxI	GGCC	4 cut(s)	48, 385, 406, 585
ApeKI	GCWGC	4 cut(s)	53, 56, 59, 563
ApoI	RAATTY	2 cut(s)	163, 320
ArsI	GACNNNNNNTTYG	2 cut(s)	355, 387
Asp700I	GAANNNNTTC	1 cut(s)	276
AspS9I	GGNCC	1 cut(s)	540
AsuHPI	GGTGA	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	540
BanI	GGYRCC	2 cut(s)	85, 118
BbsI	GAAGAC	1 cut(s)	159
BbvI	GCAGC	4 cut(s)	46, 65, 68, 575
BceAI	ACGGC	2 cut(s)	372, 393
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BciT130I	CCWGG	1 cut(s)	480
BcoDI	GTCTC	1 cut(s)	262
BfaI	CTAG	1 cut(s)	284
BfmI	CTRYAG	1 cut(s)	60
BisI	GCNGC	6 cut(s)	29, 51, 54, 57, 60, 564
BlsI	GCNGC	6 cut(s)	30, 52, 55, 58, 61, 565
Bme1390I	CCNGG	1 cut(s)	480
Bme18I	GGWCC	1 cut(s)	540
BmgT120I	GGNCC	1 cut(s)	540
BmiI	GGNNCC	4 cut(s)	87, 120, 442, 541
BmrFI	CCNGG	1 cut(s)	480
BpiI	GAAGAC	1 cut(s)	159
BplI	GAGNNNNNCTC	2 cut(s)	242, 274
BpuEI	CTTGAG	1 cut(s)	552
BsaJI	CCNNGG	3 cut(s)	409, 556, 582
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse118I	RCCGGY	1 cut(s)	88
Bse1I	ACTGG	3 cut(s)	127, 187, 463
BseBI	CCWGG	1 cut(s)	480
BseDI	CCNNGG	3 cut(s)	409, 556, 582
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	3 cut(s)	127, 187, 463
BseRI	GAGGAG	1 cut(s)	447
BseX3I	CGGCCG	1 cut(s)	48
BseXI	GCAGC	4 cut(s)	46, 65, 68, 575
BsgI	GTGCAG	1 cut(s)	582
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	4 cut(s)	50, 387, 408, 587
BshNI	GGYRCC	2 cut(s)	85, 118
BsiEI	CGRYCG	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmAI	GTCTC	1 cut(s)	262
BsnI	GGCC	4 cut(s)	50, 387, 408, 587
BspACI	CCGC	4 cut(s)	29, 51, 525, 537
BspANI	GGCC	4 cut(s)	50, 387, 408, 587
BspCNI	CTCAG	1 cut(s)	272
BspLI	GGNNCC	4 cut(s)	87, 120, 442, 541
BspMAI	CTGCAG	1 cut(s)	64
BspT107I	GGYRCC	2 cut(s)	85, 118
BsrFI	RCCGGY	1 cut(s)	88
BsrI	ACTGG	3 cut(s)	127, 187, 463
BssAI	RCCGGY	1 cut(s)	88
BssECI	CCNNGG	3 cut(s)	409, 556, 582
BssT1I	CCWWGG	1 cut(s)	556
Bst2UI	CCWGG	1 cut(s)	480
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	1 cut(s)	259
BstDSI	CCRYGG	1 cut(s)	409
BstF5I	GGATG	1 cut(s)	229
BstMAI	GTCTC	1 cut(s)	262
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 59, 106, 260
BstNI	CCWGG	1 cut(s)	480
BstNSI	RCATGY	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	478
BstSFI	CTRYAG	1 cut(s)	60
BstV1I	GCAGC	4 cut(s)	46, 65, 68, 575
BstV2I	GAAGAC	1 cut(s)	159
BstXI	CCANNNNNNTGG	1 cut(s)	368
BstZI	CGGCCG	1 cut(s)	48
BsuRI	GGCC	4 cut(s)	50, 387, 408, 587
BtgI	CCRYGG	1 cut(s)	409
BtsCI	GGATG	1 cut(s)	229
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	336
CaiI	CAGNNNCTG	1 cut(s)	59
Cfr10I	RCCGGY	1 cut(s)	88
Cfr13I	GGNCC	1 cut(s)	540
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	3 cut(s)	95, 176, 335
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	1 cut(s)	259
EaeI	YGGCCR	4 cut(s)	48, 385, 406, 585
EagI	CGGCCG	1 cut(s)	48
EclXI	CGGCCG	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	556
Eco47I	GGWCC	1 cut(s)	540
Eco52I	CGGCCG	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	200
EcoO109I	RGGNCCY	1 cut(s)	540
EcoRI	GAATTC	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	478
EcoT14I	CCWWGG	1 cut(s)	556
ErhI	CCWWGG	1 cut(s)	556
FaeI	CATG	3 cut(s)	98, 179, 338
FatI	CATG	3 cut(s)	94, 175, 334
FauI	CCCGC	1 cut(s)	530
Fnu4HI	GCNGC	6 cut(s)	29, 51, 54, 57, 60, 564
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	6 cut(s)	29, 51, 54, 57, 60, 564
FspBI	CTAG	1 cut(s)	284
GluI	GCNGC	6 cut(s)	29, 51, 54, 57, 60, 564
HaeIII	GGCC	4 cut(s)	50, 387, 408, 587
HapII	CCGG	1 cut(s)	89
Hin1II	CATG	3 cut(s)	98, 179, 338
HinfI	GANTC	1 cut(s)	199
HpaII	CCGG	1 cut(s)	89
HphI	GGTGA	1 cut(s)	197
Hpy188I	TCNGA	3 cut(s)	10, 219, 250
Hpy188III	TCNNGA	2 cut(s)	448, 569
HpyAV	CCTTC	4 cut(s)	139, 214, 454, 513
HpyCH4IV	ACGT	1 cut(s)	591
HpyCH4V	TGCA	3 cut(s)	62, 161, 563
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 59, 106, 260
HpyF3I	CTNAG	1 cut(s)	259
HpySE526I	ACGT	1 cut(s)	591
Hsp92II	CATG	3 cut(s)	98, 179, 338
LmnI	GCTCC	1 cut(s)	79
Lsp1109I	GCAGC	4 cut(s)	46, 65, 68, 575
MaeI	CTAG	1 cut(s)	284
MaeII	ACGT	1 cut(s)	591
MaeIII	GTNAC	1 cut(s)	395
MboII	GAAGA	1 cut(s)	164
MluCI	AATT	2 cut(s)	163, 320
MlyI	GAGTC	1 cut(s)	208
MmeI	TCCRAC	3 cut(s)	111, 228, 574
MroXI	GAANNNNTTC	1 cut(s)	276
MslI	CAYNNNNRTG	1 cut(s)	558
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	1 cut(s)	89
MspR9I	CCNGG	1 cut(s)	480
MvaI	CCWGG	1 cut(s)	480
MwoI	GCNNNNNNNGC	4 cut(s)	56, 59, 106, 260
NlaIII	CATG	3 cut(s)	98, 179, 338
NlaIV	GGNNCC	4 cut(s)	87, 120, 442, 541
NmeAIII	GCCGAG	1 cut(s)	563
NspI	RCATGY	1 cut(s)	338
OliI	CACNNNNGTG	1 cut(s)	558
PaeI	GCATGC	1 cut(s)	338
PdmI	GAANNNNTTC	1 cut(s)	276
PkrI	GCNGC	6 cut(s)	30, 52, 55, 58, 61, 565
PleI	GAGTC	1 cut(s)	207
PpsI	GAGTC	1 cut(s)	207
PpuMI	RGGWCCY	1 cut(s)	540
Psp1406I	AACGTT	1 cut(s)	591
Psp5II	RGGWCCY	1 cut(s)	540
Psp6I	CCWGG	1 cut(s)	478
PspGI	CCWGG	1 cut(s)	478
PspN4I	GGNNCC	4 cut(s)	87, 120, 442, 541
PspPI	GGNCC	1 cut(s)	540
PspPPI	RGGWCCY	1 cut(s)	540
PstI	CTGCAG	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	59
PvuII	CAGCTG	1 cut(s)	59
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
RseI	CAYNNNNRTG	1 cut(s)	558
SatI	GCNGC	6 cut(s)	29, 51, 54, 57, 60, 564
Sau96I	GGNCC	1 cut(s)	540
SchI	GAGTC	1 cut(s)	208
ScrFI	CCNGG	1 cut(s)	480
SfcI	CTRYAG	1 cut(s)	60
SinI	GGWCC	1 cut(s)	540
SmiMI	CAYNNNNRTG	1 cut(s)	558
SmlI	CTYRAG	1 cut(s)	567
SmoI	CTYRAG	1 cut(s)	567
SphI	GCATGC	1 cut(s)	338
Sse9I	AATT	2 cut(s)	163, 320
SsiI	CCGC	4 cut(s)	29, 51, 525, 537
SspMI	CTAG	1 cut(s)	284
StyD4I	CCNGG	1 cut(s)	478
StyI	CCWWGG	1 cut(s)	556
TaiI	ACGT	1 cut(s)	594
TaqI	TCGA	3 cut(s)	197, 324, 418
TasI	AATT	2 cut(s)	163, 320
TauI	GCSGC	2 cut(s)	31, 53
TscAI	CASTG	1 cut(s)	163
TseI	GCWGC	4 cut(s)	53, 56, 59, 563
TspDTI	ATGAA	3 cut(s)	50, 240, 594
TspRI	CASTG	1 cut(s)	163
VpaK11BI	GGWCC	1 cut(s)	540
XapI	RAATTY	2 cut(s)	163, 320
XceI	RCATGY	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	276
XspI	CTAG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.