RchiOBHm_Chr4g0445281

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0010265
Physical Location & Seq
Reverse (-)
65757325 .. 65761385
4061 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41287

Sequence Viewer

Length: 1281 bp
ATGGCAGCCACGGCGGGTTCCGAAGTCTCCGACGGCCCGGTCCTCAGCCTCATCAACAAGCGCATCCGCGCCCTCCGCAAGAAGCAGAACCGCATCCTCCAGATGGAGGAGTCCCTCGCCCAAGGCAAAGTCCTCAACAATGAGCAAAAGGAGGTCCTCCGCTCCAAGCCCGCCGTCTCCGTCCTCATCGACGAGCTCGAGAAGCTTCGCCAGCCTCTCTCCGTCGCCGTCGCCGAGGAGGTCAGCCTCGCCGTTCACGTCTCCTCCGCCCCCGCCGCTACTACTAAGCCCGAAGAAGACGAAACGCCGCCCCCGCCCAATGCGGCGCAGCAGAGCGGCGAATCTGCCGCCGATGAGGACCACCACCACCACCAGGAGCCGGTGCCGGTGCCGGTGGAGGAGCTCCTGAACCTGCTCTACTTTGGCTCCTTGTTTGATGTTAAGACGCAGAGTGACTTCACCTCGATTATGTTCACCAGGAGCCACGAGAGAGGGTGCTGCTTGACCTATGACACCGTCACCGATGACGACACTGATTTGCTCTCCGAGAAGGACTTGGATTTGCTCTCCTCCCTCAGTGGTTTGTTGATCTCTAGGCCTGTCGATACGAGCTTATCTCACAAGAATGCTCTGCAGCGCTGCATTGACCACGCCAAGCTCTGGCTCGCTAAGTCGGACCTGCCCATTGAGCCTGATGCTACTGTTACATATGCGAGTTTGAGGGAGAGGCTGAGTAGGATAATGTCTTCGGACTACTTCACCATCACGCCTGAAATGAAAGCTCCTGAGGAAATGGCAGCTGCTGCTGGCGGAAACTTTGCTCCGTTTCAGGATGAGGAGACACCAAATCTTCAAGGACATGAGAGGGGTGAAAATCAATCAGGTCCTGTTGAGGAAGTTCAGAAGGATGAATTTGAGACAGAAAATCCTGCAGAGGTTGTCTCGGTTCAACAAGAACAAGTAAAGCCAGAAACAGAAGTAGAGCATACTGAGAGAGATGTAGAATTCGAGCAACATAATGGTCCACGAAGGCAGTATCAAAACCAAAGAGGTGGCCGTGGAGGAGGCCGTCGAGGTTACTCCAATGGCCGTGGAGGCCGAGGCAGAGGAGGTGGTCCTTACCAGAATGGTCGGAACCAGTTTTATGACCAGCCTGGAAACTATTATCCAAGGAATTACAATAGGGGAAGAGGCGGTAGGGGTGGTGGACCATCTTACAACAACCATGGTTCAGCTGCTCAAGATGGTCATGATTCAGCTAACATTGGAGTTGCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1618

Protein Analysis

426

Amino Acids

46.82

Weight (kDa)

5.1

Isoelectric Point (pI)

56.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 38
Acc36I ACCTGC 2 cut(s) 420, 687
AccB1I GGYRCC 2 cut(s) 382, 388
AccB7I CCANNNNNTGG 1 cut(s) 660
AccBSI CCGCTC 2 cut(s) 162, 336
AccII CGCG 1 cut(s) 69
AcoI YGGCCR 2 cut(s) 1054, 1087
AcsI RAATTY 2 cut(s) 911, 1004
AfeI AGCGCT 1 cut(s) 638
AfiI CCNNNNNNNGG 5 cut(s) 103, 106, 373, 379, 660
AgsI TTSAA 2 cut(s) 854, 950
AjiI CACGTC 1 cut(s) 259
AjnI CCWGG 3 cut(s) 372, 476, 1153
AluBI AGCT 9 cut(s) 196, 205, 403, 612, 658, 782, 800, 1235, 1259
AluI AGCT 9 cut(s) 196, 205, 403, 612, 658, 782, 800, 1235, 1259
Alw21I GWGCWC 2 cut(s) 198, 405
Alw26I GTCTC 6 cut(s) 31, 181, 265, 833, 911, 946
AlwNI CAGNNNCTG 2 cut(s) 803, 887
Ama87I CYCGRG 1 cut(s) 197
Aor51HI AGCGCT 1 cut(s) 638
AoxI GGCC 6 cut(s) 34, 596, 1054, 1066, 1087, 1096
ApeKI GCWGC 9 cut(s) 5, 328, 498, 634, 639, 797, 800, 803, 1235
ApoI RAATTY 2 cut(s) 911, 1004
AspLEI GCGC 4 cut(s) 63, 71, 328, 639
AspS9I GGNCC 9 cut(s) 35, 40, 154, 358, 676, 884, 1022, 1115, 1208
AsuC2I CCSGG 1 cut(s) 38
AsuHPI GGTGA 5 cut(s) 451, 466, 511, 751, 881
AvaI CYCGRG 1 cut(s) 197
AvaII GGWCC 8 cut(s) 40, 154, 358, 676, 884, 1022, 1115, 1208
AxyI CCTNAGG 1 cut(s) 786
BanI GGYRCC 2 cut(s) 382, 388
BanII GRGCYC 2 cut(s) 198, 405
BauI CACGAG 1 cut(s) 485
BbsI GAAGAC 2 cut(s) 303, 738
Bbv12I GWGCWC 2 cut(s) 198, 405
BbvCI CCTCAGC 1 cut(s) 44
BbvI GCAGC 9 cut(s) 17, 340, 485, 626, 646, 787, 790, 809, 1222
BccI CCATC 4 cut(s) 97, 770, 1219, 1238
BceAI ACGGC 8 cut(s) 27, 49, 158, 212, 236, 1041, 1053, 1074
BciT130I CCWGG 3 cut(s) 374, 478, 1155
BcnI CCSGG 1 cut(s) 38
BcoDI GTCTC 6 cut(s) 31, 181, 265, 833, 911, 946
BfaI CTAG 1 cut(s) 594
BfmI CTRYAG 2 cut(s) 632, 930
BfoI RGCGCY 1 cut(s) 640
BfuAI ACCTGC 2 cut(s) 420, 687
BglI GCCNNNNNGGC 1 cut(s) 1095
Bme1390I CCNGG 4 cut(s) 38, 374, 478, 1155
Bme18I GGWCC 8 cut(s) 40, 154, 358, 676, 884, 1022, 1115, 1208
BmeT110I CYCGRG 1 cut(s) 197
BmgBI CACGTC 1 cut(s) 259
BmgT120I GGNCC 9 cut(s) 35, 40, 154, 358, 676, 884, 1022, 1115, 1208
BmiI GGNNCC 7 cut(s) 19, 378, 384, 390, 427, 482, 1136
BmrFI CCNGG 4 cut(s) 38, 374, 478, 1155
BmsI GCATC 3 cut(s) 72, 102, 685
BpiI GAAGAC 2 cut(s) 303, 738
BplI GAGNNNNNCTC 4 cut(s) 601, 633, 926, 958
BpmI CTGGAG 1 cut(s) 83
Bpu10I CCTNAGC 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 1224
BpuMI CCSGG 1 cut(s) 38
BsaJI CCNNGG 8 cut(s) 9, 121, 234, 1057, 1090, 1099, 1169, 1225
BsaXI ACNNNNNCTCC 4 cut(s) 248, 278, 410, 440
Bsc4I CCNNNNNNNGG 5 cut(s) 103, 106, 373, 379, 660
Bse118I RCCGGY 3 cut(s) 379, 385, 391
Bse1I ACTGG 1 cut(s) 1138
Bse21I CCTNAGG 1 cut(s) 786
BseBI CCWGG 3 cut(s) 374, 478, 1155
BseDI CCNNGG 8 cut(s) 9, 121, 234, 1057, 1090, 1099, 1169, 1225
BseGI GGATG 4 cut(s) 63, 93, 838, 913
BseLI CCNNNNNNNGG 5 cut(s) 103, 106, 373, 379, 660
BseMII CTCAG 5 cut(s) 58, 589, 722, 777, 981
BseNI ACTGG 1 cut(s) 1138
BseRI GAGGAG 8 cut(s) 122, 251, 253, 413, 559, 851, 1077, 1122
BseXI GCAGC 9 cut(s) 17, 340, 485, 626, 646, 787, 790, 809, 1222
Bsh1236I CGCG 1 cut(s) 69
BshFI GGCC 6 cut(s) 36, 598, 1056, 1068, 1089, 1098
BshNI GGYRCC 2 cut(s) 382, 388
BsiHKAI GWGCWC 2 cut(s) 198, 405
BsiHKCI CYCGRG 1 cut(s) 197
BsiSI CCGG 4 cut(s) 38, 380, 386, 392
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 5 cut(s) 103, 106, 373, 379, 660
BsmAI GTCTC 6 cut(s) 31, 181, 265, 833, 911, 946
BsmBI CGTCTC 2 cut(s) 181, 265
BsmFI GGGAC 1 cut(s) 97
BsmI GAATGC 1 cut(s) 631
BsnI GGCC 6 cut(s) 36, 598, 1056, 1068, 1089, 1098
BsoBI CYCGRG 1 cut(s) 197
Bsp1286I GDGCHC 2 cut(s) 198, 405
Bsp143I GATC 1 cut(s) 588
Bsp19I CCATGG 1 cut(s) 1225
BspANI GGCC 6 cut(s) 36, 598, 1056, 1068, 1089, 1098
BspCNI CTCAG 5 cut(s) 57, 588, 723, 778, 982
BspFNI CGCG 1 cut(s) 69
BspHI TCATGA 1 cut(s) 1249
BspLI GGNNCC 7 cut(s) 19, 378, 384, 390, 427, 482, 1136
BspMAI CTGCAG 2 cut(s) 636, 934
BspMI ACCTGC 2 cut(s) 420, 687
BspT107I GGYRCC 2 cut(s) 382, 388
BsrBI CCGCTC 2 cut(s) 162, 336
BsrFI RCCGGY 3 cut(s) 379, 385, 391
BsrI ACTGG 1 cut(s) 1138
BssAI RCCGGY 3 cut(s) 379, 385, 391
BssECI CCNNGG 8 cut(s) 9, 121, 234, 1057, 1090, 1099, 1169, 1225
BssMI GATC 1 cut(s) 588
BssSI CACGAG 1 cut(s) 485
BssT1I CCWWGG 3 cut(s) 121, 1169, 1225
Bst2BI CACGAG 1 cut(s) 485
Bst2UI CCWGG 3 cut(s) 374, 478, 1155
Bst4CI ACNGT 2 cut(s) 517, 703
Bst6I CTCTTC 1 cut(s) 1183
BstAPI GCANNNNNTGC 1 cut(s) 803
BstC8I GCNNGC 4 cut(s) 171, 212, 666, 808
BstDEI CTNAG 7 cut(s) 44, 285, 575, 669, 731, 786, 990
BstDSI CCRYGG 4 cut(s) 9, 1057, 1090, 1225
BstF5I GGATG 4 cut(s) 63, 93, 838, 913
BstFNI CGCG 1 cut(s) 69
BstH2I RGCGCY 1 cut(s) 640
BstHHI GCGC 4 cut(s) 63, 71, 328, 639
BstKTI GATC 1 cut(s) 591
BstMAI GTCTC 6 cut(s) 31, 181, 265, 833, 911, 946
BstMBI GATC 1 cut(s) 588
BstMWI GCNNNNNNNGC 9 cut(s) 11, 75, 202, 211, 275, 313, 688, 803, 1095
BstNI CCWGG 3 cut(s) 374, 478, 1155
BstSCI CCNGG 4 cut(s) 36, 372, 476, 1153
BstSFI CTRYAG 2 cut(s) 632, 930
BstUI CGCG 1 cut(s) 69
BstV1I GCAGC 9 cut(s) 17, 340, 485, 626, 646, 787, 790, 809, 1222
BstV2I GAAGAC 2 cut(s) 303, 738
BstXI CCANNNNNNTGG 1 cut(s) 1052
Bsu36I CCTNAGG 1 cut(s) 786
BsuRI GGCC 6 cut(s) 36, 598, 1056, 1068, 1089, 1098
BtgI CCRYGG 4 cut(s) 9, 1057, 1090, 1225
BtrI CACGTC 1 cut(s) 259
BtsCI GGATG 4 cut(s) 63, 93, 838, 913
BtsIMutI CAGTG 2 cut(s) 531, 583
BveI ACCTGC 2 cut(s) 420, 687
Cac8I GCNNGC 4 cut(s) 171, 212, 666, 808
CaiI CAGNNNCTG 2 cut(s) 803, 887
CciI TCATGA 1 cut(s) 1249
CfoI GCGC 4 cut(s) 63, 71, 328, 639
Cfr10I RCCGGY 3 cut(s) 379, 385, 391
Cfr13I GGNCC 9 cut(s) 35, 40, 154, 358, 676, 884, 1022, 1115, 1208
CseI GACGC 1 cut(s) 454
CspCI CAANNNNNGTGG 2 cut(s) 1072, 1107
CviAII CATG 3 cut(s) 860, 1226, 1250
DdeI CTNAG 7 cut(s) 44, 285, 575, 669, 731, 786, 990
DpnI GATC 1 cut(s) 590
DpnII GATC 1 cut(s) 588
DrdI GACNNNNNNGTC 1 cut(s) 38
DseDI GACNNNNNNGTC 1 cut(s) 38
EaeI YGGCCR 2 cut(s) 1054, 1087
Eam1104I CTCTTC 1 cut(s) 1183
EarI CTCTTC 1 cut(s) 1183
EciI GGCGGA 2 cut(s) 256, 825
Ecl136II GAGCTC 2 cut(s) 196, 403
Eco130I CCWWGG 3 cut(s) 121, 1169, 1225
Eco147I AGGCCT 1 cut(s) 598
Eco24I GRGCYC 2 cut(s) 198, 405
Eco47I GGWCC 8 cut(s) 40, 154, 358, 676, 884, 1022, 1115, 1208
Eco47III AGCGCT 1 cut(s) 638
Eco53kI GAGCTC 2 cut(s) 196, 403
Eco81I CCTNAGG 1 cut(s) 786
Eco88I CYCGRG 1 cut(s) 197
EcoICRI GAGCTC 2 cut(s) 196, 403
EcoO109I RGGNCCY 2 cut(s) 154, 884
EcoRI GAATTC 1 cut(s) 1004
EcoRII CCWGG 3 cut(s) 372, 476, 1153
EcoT14I CCWWGG 3 cut(s) 121, 1169, 1225
EcoT38I GRGCYC 2 cut(s) 198, 405
ErhI CCWWGG 3 cut(s) 121, 1169, 1225
Esp3I CGTCTC 2 cut(s) 181, 265
FaeI CATG 3 cut(s) 863, 1229, 1253
FaqI GGGAC 1 cut(s) 97
FatI CATG 3 cut(s) 859, 1225, 1249
FauI CCCGC 4 cut(s) 7, 178, 280, 321
FauNDI CATATG 1 cut(s) 709
FokI GGATG 4 cut(s) 50, 80, 845, 920
FriOI GRGCYC 2 cut(s) 198, 405
FspBI CTAG 1 cut(s) 594
GlaI GCGC 4 cut(s) 62, 70, 327, 638
GsuI CTGGAG 1 cut(s) 83
HaeII RGCGCY 1 cut(s) 640
HaeIII GGCC 6 cut(s) 36, 598, 1056, 1068, 1089, 1098
HapII CCGG 4 cut(s) 38, 380, 386, 392
HgaI GACGC 1 cut(s) 454
HhaI GCGC 4 cut(s) 63, 71, 328, 639
Hin1II CATG 3 cut(s) 863, 1229, 1253
Hin6I GCGC 4 cut(s) 61, 69, 326, 637
HinP1I GCGC 4 cut(s) 61, 69, 326, 637
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 3 cut(s) 110, 341, 1253
HpaII CCGG 4 cut(s) 38, 380, 386, 392
HphI GGTGA 5 cut(s) 451, 466, 511, 751, 881
Hpy166II GTNNAC 4 cut(s) 256, 474, 1025, 1208
Hpy188I TCNGA 7 cut(s) 22, 31, 547, 676, 751, 903, 1134
Hpy188III TCNNGA 7 cut(s) 100, 199, 406, 785, 830, 1241, 1250
Hpy8I GTNNAC 4 cut(s) 256, 474, 1025, 1208
Hpy99I CGWCG 5 cut(s) 35, 194, 227, 233, 1074
HpyAV CCTTC 3 cut(s) 544, 898, 1023
HpyCH4III ACNGT 2 cut(s) 517, 703
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 3 cut(s) 634, 642, 932
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 75, 202, 211, 275, 313, 688, 803, 1095
HpyF3I CTNAG 7 cut(s) 44, 285, 575, 669, 731, 786, 990
HpySE526I ACGT 1 cut(s) 258
Hsp92II CATG 3 cut(s) 863, 1229, 1253
HspAI GCGC 4 cut(s) 61, 69, 326, 637
Kzo9I GATC 1 cut(s) 588
LmnI GCTCC 8 cut(s) 167, 376, 400, 408, 431, 480, 787, 826
Lsp1109I GCAGC 9 cut(s) 17, 340, 485, 626, 646, 787, 790, 809, 1222
LweI GCATC 3 cut(s) 72, 102, 685
MaeI CTAG 1 cut(s) 594
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 4 cut(s) 452, 517, 703, 1076
MalI GATC 1 cut(s) 590
MbiI CCGCTC 2 cut(s) 162, 336
MboI GATC 1 cut(s) 588
MboII GAAGA 5 cut(s) 305, 308, 738, 842, 1200
MhlI GDGCHC 2 cut(s) 198, 405
MluCI AATT 3 cut(s) 911, 1004, 1174
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 3 cut(s) 54, 654, 1112
MseI TTAA 2 cut(s) 441, 1279
MslI CAYNNNNRTG 1 cut(s) 624
MspA1I CMGCKG 2 cut(s) 800, 1235
MspI CCGG 4 cut(s) 38, 380, 386, 392
MspR9I CCNGG 4 cut(s) 38, 374, 478, 1155
Mva1269I GAATGC 1 cut(s) 631
MvaI CCWGG 3 cut(s) 374, 478, 1155
MvnI CGCG 1 cut(s) 69
MwoI GCNNNNNNNGC 9 cut(s) 11, 75, 202, 211, 275, 313, 688, 803, 1095
NciI CCSGG 1 cut(s) 38
NcoI CCATGG 1 cut(s) 1225
NdeI CATATG 1 cut(s) 709
NdeII GATC 1 cut(s) 588
NlaIII CATG 3 cut(s) 863, 1229, 1253
NlaIV GGNNCC 7 cut(s) 19, 378, 384, 390, 427, 482, 1136
NmeAIII GCCGAG 2 cut(s) 259, 1124
NmuCI GTSAC 2 cut(s) 452, 517
PaeR7I CTCGAG 1 cut(s) 197
PagI TCATGA 1 cut(s) 1249
PceI AGGCCT 1 cut(s) 598
PcsI WCGNNNNNNNCGW 3 cut(s) 195, 231, 255
PctI GAATGC 1 cut(s) 631
PfeI GAWTC 2 cut(s) 341, 1253
PflFI GACNNNGTC 1 cut(s) 515
PflMI CCANNNNNTGG 1 cut(s) 660
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PpuMI RGGWCCY 2 cut(s) 154, 884
Psp124BI GAGCTC 2 cut(s) 198, 405
Psp5II RGGWCCY 2 cut(s) 154, 884
Psp6I CCWGG 3 cut(s) 372, 476, 1153
PspGI CCWGG 3 cut(s) 372, 476, 1153
PspN4I GGNNCC 7 cut(s) 19, 378, 384, 390, 427, 482, 1136
PspPI GGNCC 9 cut(s) 35, 40, 154, 358, 676, 884, 1022, 1115, 1208
PspPPI RGGWCCY 2 cut(s) 154, 884
PsrI GAACNNNNNNTAC 2 cut(s) 401, 433
PstI CTGCAG 2 cut(s) 636, 934
PstNI CAGNNNCTG 2 cut(s) 803, 887
PsyI GACNNNGTC 1 cut(s) 515
PvuII CAGCTG 2 cut(s) 800, 1235
RseI CAYNNNNRTG 1 cut(s) 624
SacI GAGCTC 2 cut(s) 198, 405
SaqAI TTAA 2 cut(s) 441, 1279
Sau3AI GATC 1 cut(s) 588
Sau96I GGNCC 9 cut(s) 35, 40, 154, 358, 676, 884, 1022, 1115, 1208
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 4 cut(s) 38, 374, 478, 1155
SduI GDGCHC 2 cut(s) 198, 405
SfaNI GCATC 3 cut(s) 72, 102, 685
SfcI CTRYAG 2 cut(s) 632, 930
SfiI GGCCNNNNNGGCC 1 cut(s) 1095
Sfr274I CTCGAG 1 cut(s) 197
SinI GGWCC 8 cut(s) 40, 154, 358, 676, 884, 1022, 1115, 1208
SlaI CTCGAG 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 624
SmlI CTYRAG 2 cut(s) 197, 1239
SmoI CTYRAG 2 cut(s) 197, 1239
Sse9I AATT 3 cut(s) 911, 1004, 1174
SseBI AGGCCT 1 cut(s) 598
SspMI CTAG 1 cut(s) 594
SstI GAGCTC 2 cut(s) 198, 405
StuI AGGCCT 1 cut(s) 598
StyD4I CCNGG 4 cut(s) 36, 372, 476, 1153
StyI CCWWGG 3 cut(s) 121, 1169, 1225
TaaI ACNGT 2 cut(s) 517, 703
TaiI ACGT 1 cut(s) 261
TaqI TCGA 6 cut(s) 189, 198, 464, 603, 1008, 1072
TasI AATT 3 cut(s) 911, 1004, 1174
TauI GCSGC 5 cut(s) 278, 310, 326, 339, 350
TfiI GAWTC 2 cut(s) 341, 1253
Tru1I TTAA 2 cut(s) 441, 1279
Tru9I TTAA 2 cut(s) 441, 1279
TscAI CASTG 2 cut(s) 538, 583
TseFI GTSAC 2 cut(s) 452, 517
TseI GCWGC 9 cut(s) 5, 328, 498, 634, 639, 797, 800, 803, 1235
Tsp45I GTSAC 2 cut(s) 452, 517
TspDTI ATGAA 2 cut(s) 791, 924
TspGWI ACGGA 3 cut(s) 169, 211, 813
TspRI CASTG 2 cut(s) 538, 583
Tth111I GACNNNGTC 1 cut(s) 515
Van91I CCANNNNNTGG 1 cut(s) 660
VpaK11BI GGWCC 8 cut(s) 40, 154, 358, 676, 884, 1022, 1115, 1208
XapI RAATTY 2 cut(s) 911, 1004
XhoI CTCGAG 1 cut(s) 197
XspI CTAG 1 cut(s) 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.