Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010265

Physical Location & Seq

Genomic Coordinates Reverse (-)

27372301 .. 27375728

Gene Structure 3428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G265800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCTTCGGTCTACTTTACTACTACACCGGAAATGAAAGCTCCAGTGGAAGTTGCTGCGGCAGCTGCTGCTGGGAACTATGCTCCTTTTCAGGTGCAGGTGCCTGTCCAGGTGGAAGGTGAAGTTGCACACTTCCAGCAGAAGGATGAAGACACAGCAAATTTTCAAGGAAACGAGACTGGTGATAACCAATCCAGTCGCACAGAGGAACTTCAGAAGGATGAATTAGAAACAGAAAATCCTTCTGAGGTTGTCTCGGTTCAACAAGAACAAGCCAAGCTAGAAACAGAACTAGAGTACAATCAAAGAGATGTAGAATCTGAGCAACAGCAATTTTCACGCAGGCCATATCAAAACCAAAGAGGTGGTCGTGGTGGAGGTGGGCGTAGAGTAAACACCAATGGCCGTGGAGGTCGAGGCAGTGGAAGAGGAGGTGGACCCTACCAGAATGGCCGCAACCAGTTCTATGACCAGCCTGGAAATTATTATCCGAGGAACTACTATAACAATAGGGGAAGGGGCGGTAGAGGTGGTGGGCCCTCTTACAACCACCACGGTTCCGCAGCTCAAGATGGCCATAACTCGGCCAACGTTGGAGTTGCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1618

Protein Analysis

203

Amino Acids

22.05

Weight (kDa)

5.45

Isoelectric Point (pI)

47.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27090
fragaria_vesca	FvH4_4g35680 FvH4_4g35680
malus_domestica	MD13G1080700.v1.1 MD16G1080200.v1.1
prunus_persica	Prupe.1G265800_v2.0.a1
pyrus_communis	pycom13g06980 pycom16g06940
rosa_chinensis	RchiOBHm_Chr4g0445281
rosa_laevigata	RLG00000005752
rosa_multiflora	Rmu_co8092570.1_g000001 Rmu_sc0000050.1_g000024 Rmu_sc0007093.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385790
rosa_rugosa	Rorug04G0360000 Rorug04G0360100
rosa_samantha	Rh4AG421500 Rh4BG433400 Rh4CG448100 Rh4DG429400
rosa_wichuraiana	Rw4G036150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	88
Acc36I	ACCTGC	1 cut(s)	88
AccB1I	GGYRCC	1 cut(s)	100
AccI	GTMKAC	1 cut(s)	12
AciI	CCGC	4 cut(s)	59, 454, 522, 561
AclI	AACGTT	1 cut(s)	591
AcoI	YGGCCR	4 cut(s)	403, 451, 574, 585
AcsI	RAATTY	1 cut(s)	160
AcuI	CTGAAG	1 cut(s)	197
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	2 cut(s)	142, 583
AgsI	TTSAA	2 cut(s)	167, 263
AjnI	CCWGG	2 cut(s)	108, 475
AluBI	AGCT	4 cut(s)	41, 65, 280, 566
AluI	AGCT	4 cut(s)	41, 65, 280, 566
Alw26I	GTCTC	2 cut(s)	170, 259
AlwNI	CAGNNNCTG	1 cut(s)	68
AoxI	GGCC	6 cut(s)	344, 403, 451, 536, 574, 585
ApaI	GGGCCC	1 cut(s)	540
ApeKI	GCWGC	5 cut(s)	56, 62, 65, 68, 563
ApoI	RAATTY	1 cut(s)	160
ArsI	GACNNNNNNTTYG	2 cut(s)	352, 384
AspS9I	GGNCC	3 cut(s)	437, 536, 537
AsuHPI	GGTGA	2 cut(s)	131, 194
AvaII	GGWCC	1 cut(s)	437
BaeGI	GKGCMC	1 cut(s)	540
BalI	TGGCCA	1 cut(s)	576
BanI	GGYRCC	1 cut(s)	100
BanII	GRGCYC	1 cut(s)	540
BbsI	GAAGAC	1 cut(s)	156
BbvI	GCAGC	5 cut(s)	43, 52, 55, 74, 575
BccI	CCATC	1 cut(s)	566
BceAI	ACGGC	1 cut(s)	390
BciT130I	CCWGG	2 cut(s)	110, 477
BcoDI	GTCTC	2 cut(s)	170, 259
BfaI	CTAG	2 cut(s)	281, 293
BfuAI	ACCTGC	1 cut(s)	88
BisI	GCNGC	7 cut(s)	57, 60, 63, 66, 69, 454, 564
BlsI	GCNGC	7 cut(s)	58, 61, 64, 67, 70, 455, 565
Bme1390I	CCNGG	2 cut(s)	110, 477
Bme18I	GGWCC	1 cut(s)	437
BmgT120I	GGNCC	3 cut(s)	437, 536, 537
BmiI	GGNNCC	4 cut(s)	102, 439, 538, 559
BmrFI	CCNGG	2 cut(s)	110, 477
BpiI	GAAGAC	1 cut(s)	156
BplI	GAGNNNNNCTC	2 cut(s)	239, 271
BpmI	CTGGAG	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	552
BsaJI	CCNNGG	3 cut(s)	406, 491, 553
BsaWI	WCCGGW	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 583
Bse1I	ACTGG	4 cut(s)	44, 184, 195, 460
BseBI	CCWGG	2 cut(s)	110, 477
BseDI	CCNNGG	3 cut(s)	406, 491, 553
BseGI	GGATG	2 cut(s)	151, 226
BseLI	CCNNNNNNNGG	2 cut(s)	142, 583
BseMII	CTCAG	2 cut(s)	237, 312
BseNI	ACTGG	4 cut(s)	44, 184, 195, 460
BseRI	GAGGAG	1 cut(s)	444
BseSI	GKGCMC	1 cut(s)	540
BseXI	GCAGC	5 cut(s)	43, 52, 55, 74, 575
BseYI	CCCAGC	1 cut(s)	71
BsgI	GTGCAG	1 cut(s)	116
BshFI	GGCC	6 cut(s)	346, 405, 453, 538, 576, 587
BshNI	GGYRCC	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	29
BslI	CCNNNNNNNGG	2 cut(s)	142, 583
BsmAI	GTCTC	2 cut(s)	170, 259
BsnI	GGCC	6 cut(s)	346, 405, 453, 538, 576, 587
Bsp120I	GGGCCC	1 cut(s)	536
Bsp1286I	GDGCHC	1 cut(s)	540
BspACI	CCGC	4 cut(s)	59, 454, 522, 561
BspANI	GGCC	6 cut(s)	346, 405, 453, 538, 576, 587
BspCNI	CTCAG	2 cut(s)	238, 313
BspHI	TCATGA	1 cut(s)	605
BspLI	GGNNCC	4 cut(s)	102, 439, 538, 559
BspMI	ACCTGC	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	100
BsrI	ACTGG	4 cut(s)	44, 184, 195, 460
BssECI	CCNNGG	3 cut(s)	406, 491, 553
Bst2UI	CCWGG	2 cut(s)	110, 477
Bst4CI	ACNGT	1 cut(s)	557
Bst6I	CTCTTC	1 cut(s)	421
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	344
BstDEI	CTNAG	2 cut(s)	246, 321
BstDSI	CCRYGG	2 cut(s)	406, 553
BstF5I	GGATG	2 cut(s)	151, 226
BstMAI	GTCTC	2 cut(s)	170, 259
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 65, 68
BstNI	CCWGG	2 cut(s)	110, 477
BstSCI	CCNGG	2 cut(s)	108, 475
BstSLI	GKGCMC	1 cut(s)	540
BstV1I	GCAGC	5 cut(s)	43, 52, 55, 74, 575
BstV2I	GAAGAC	1 cut(s)	156
BstXI	CCANNNNNNTGG	1 cut(s)	365
BsuRI	GGCC	6 cut(s)	346, 405, 453, 538, 576, 587
BtgI	CCRYGG	2 cut(s)	406, 553
BtsCI	GGATG	2 cut(s)	151, 226
BtsI	GCAGTG	1 cut(s)	427
BtsIMutI	CAGTG	2 cut(s)	51, 427
BveI	ACCTGC	1 cut(s)	88
Cac8I	GCNNGC	1 cut(s)	344
CaiI	CAGNNNCTG	1 cut(s)	68
CciI	TCATGA	1 cut(s)	605
Cfr13I	GGNCC	3 cut(s)	437, 536, 537
Csp6I	GTAC	1 cut(s)	298
CspCI	CAANNNNNGTGG	2 cut(s)	388, 423
CviAII	CATG	1 cut(s)	606
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	2 cut(s)	246, 321
EaeI	YGGCCR	4 cut(s)	403, 451, 574, 585
Eam1104I	CTCTTC	1 cut(s)	421
EarI	CTCTTC	1 cut(s)	421
Eco24I	GRGCYC	1 cut(s)	540
Eco47I	GGWCC	1 cut(s)	437
Eco57I	CTGAAG	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	537
EcoRII	CCWGG	2 cut(s)	108, 475
EcoT38I	GRGCYC	1 cut(s)	540
FaeI	CATG	1 cut(s)	609
FaiI	YATR	6 cut(s)	81, 349, 468, 504, 579, 607
FatI	CATG	1 cut(s)	605
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	7 cut(s)	57, 60, 63, 66, 69, 454, 564
FokI	GGATG	2 cut(s)	158, 233
FriOI	GRGCYC	1 cut(s)	540
Fsp4HI	GCNGC	7 cut(s)	57, 60, 63, 66, 69, 454, 564
FspBI	CTAG	2 cut(s)	281, 293
GluI	GCNGC	7 cut(s)	57, 60, 63, 66, 69, 454, 564
GsaI	CCCAGC	1 cut(s)	75
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	6 cut(s)	346, 405, 453, 538, 576, 587
HapII	CCGG	1 cut(s)	29
Hin1II	CATG	1 cut(s)	609
HinfI	GANTC	1 cut(s)	317
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	2 cut(s)	131, 194
Hpy166II	GTNNAC	3 cut(s)	13, 394, 437
Hpy188I	TCNGA	4 cut(s)	216, 247, 322, 492
Hpy188III	TCNNGA	2 cut(s)	569, 606
Hpy8I	GTNNAC	3 cut(s)	13, 394, 437
HpyAV	CCTTC	5 cut(s)	110, 136, 211, 252, 510
HpyCH4III	ACNGT	1 cut(s)	557
HpyCH4IV	ACGT	1 cut(s)	591
HpyCH4V	TGCA	3 cut(s)	97, 128, 602
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 65, 68
HpyF3I	CTNAG	2 cut(s)	246, 321
HpySE526I	ACGT	1 cut(s)	591
Hsp92II	CATG	1 cut(s)	609
LmnI	GCTCC	2 cut(s)	46, 88
Lsp1109I	GCAGC	5 cut(s)	43, 52, 55, 74, 575
MaeI	CTAG	2 cut(s)	281, 293
MaeII	ACGT	1 cut(s)	591
MboII	GAAGA	2 cut(s)	161, 438
MhlI	GDGCHC	1 cut(s)	540
MlsI	TGGCCA	1 cut(s)	576
MluCI	AATT	4 cut(s)	160, 224, 332, 481
MluNI	TGGCCA	1 cut(s)	576
MmeI	TCCRAC	1 cut(s)	574
Mox20I	TGGCCA	1 cut(s)	576
MscI	TGGCCA	1 cut(s)	576
Msp20I	TGGCCA	1 cut(s)	576
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	1 cut(s)	29
MspR9I	CCNGG	2 cut(s)	110, 477
MvaI	CCWGG	2 cut(s)	110, 477
MwoI	GCNNNNNNNGC	3 cut(s)	62, 65, 68
NlaIII	CATG	1 cut(s)	609
NlaIV	GGNNCC	4 cut(s)	102, 439, 538, 559
NmeAIII	GCCGAG	1 cut(s)	563
PagI	TCATGA	1 cut(s)	605
PaqCI	CACCTGC	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	317
PkrI	GCNGC	7 cut(s)	58, 61, 64, 67, 70, 455, 565
Psp1406I	AACGTT	1 cut(s)	591
Psp6I	CCWGG	2 cut(s)	108, 475
PspFI	CCCAGC	1 cut(s)	71
PspGI	CCWGG	2 cut(s)	108, 475
PspN4I	GGNNCC	4 cut(s)	102, 439, 538, 559
PspOMI	GGGCCC	1 cut(s)	536
PspPI	GGNCC	3 cut(s)	437, 536, 537
PstNI	CAGNNNCTG	1 cut(s)	68
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SatI	GCNGC	7 cut(s)	57, 60, 63, 66, 69, 454, 564
Sau96I	GGNCC	3 cut(s)	437, 536, 537
ScrFI	CCNGG	2 cut(s)	110, 477
SduI	GDGCHC	1 cut(s)	540
SinI	GGWCC	1 cut(s)	437
SmlI	CTYRAG	1 cut(s)	567
SmoI	CTYRAG	1 cut(s)	567
Sse9I	AATT	4 cut(s)	160, 224, 332, 481
SsiI	CCGC	4 cut(s)	59, 454, 522, 561
SspMI	CTAG	2 cut(s)	281, 293
StyD4I	CCNGG	2 cut(s)	108, 475
TaaI	ACNGT	1 cut(s)	557
TaiI	ACGT	1 cut(s)	594
TaqI	TCGA	1 cut(s)	415
TasI	AATT	4 cut(s)	160, 224, 332, 481
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	2 cut(s)	62, 456
TfiI	GAWTC	1 cut(s)	317
TscAI	CASTG	2 cut(s)	51, 427
TseI	GCWGC	5 cut(s)	56, 62, 65, 68, 563
TspDTI	ATGAA	3 cut(s)	50, 162, 237
TspRI	CASTG	2 cut(s)	51, 427
VpaK11BI	GGWCC	1 cut(s)	437
XapI	RAATTY	1 cut(s)	160
XmiI	GTMKAC	1 cut(s)	12
XspI	CTAG	2 cut(s)	281, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.