Rorug04G0360100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0010265
Physical Location & Seq
Forward (+)
53291077 .. 53292182
1106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0360100.1

Sequence Viewer

Length: 426 bp
ATGAGTGGGTTTCATGATGTTGAGCTCAAAGTCCGCGATTACGAGCTTGATCAGTATGGTGTTGTTAACAATGCTGTCTTTGCAAGTTACTGCCAGCACGGTCGTCATGAACTTCTGGAAAGGGTTGGCATGAGCGCTGATGCGGTTGCCCGTACTGGTGATGCACTAGCATTGTCAGAATTGTCTCTCAAATTCATTGCGCCTCTAACAAGTGGAGACAAGTTTGTCATAAAGGTGAGGGTGGCCAACTCTTCAGCTGCTCGCTTGTATTTTGATCACTTCATTTTCAAGCTGCCAAATCTAGAGCCTATCTTGGAAGCAAAGGCCACTGCAGTGTGGCTTGATAAAAACTATCGCCCTATCCGTATTCCGCCGGAGGTGAGATCTAAACTTGTTCAATTTCTTTGCCGTGAGGAGTCTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1618

Protein Analysis

141

Amino Acids

15.96

Weight (kDa)

6.9

Isoelectric Point (pI)

24.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
4HBT_2 PF13279 11 - 131 7.8e-18 Thioesterase-like superfamily
4HBT PF03061 19 - 100 3e-10 Thioesterase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 224
AccII CGCG 1 cut(s) 36
AciI CCGC 3 cut(s) 34, 143, 371
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 1 cut(s) 191
AcuI CTGAAG 1 cut(s) 237
AfaI GTAC 1 cut(s) 154
AfeI AGCGCT 1 cut(s) 136
AgsI TTSAA 2 cut(s) 289, 398
AleI CACNNNNGTG 1 cut(s) 332
AluBI AGCT 4 cut(s) 25, 46, 257, 292
AluI AGCT 4 cut(s) 25, 46, 257, 292
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 2 cut(s) 189, 210
Aor51HI AGCGCT 1 cut(s) 136
AoxI GGCC 2 cut(s) 243, 324
ApeKI GCWGC 2 cut(s) 257, 292
ApoI RAATTY 1 cut(s) 191
AspLEI GCGC 2 cut(s) 137, 202
AsuHPI GGTGA 3 cut(s) 170, 247, 391
BalI TGGCCA 1 cut(s) 245
BanII GRGCYC 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 2 cut(s) 244, 279
BceAI ACGGC 1 cut(s) 393
BclI TGATCA 2 cut(s) 49, 274
BcoDI GTCTC 2 cut(s) 189, 210
BfaI CTAG 2 cut(s) 167, 302
BfmI CTRYAG 1 cut(s) 330
BfoI RGCGCY 1 cut(s) 138
BglII AGATCT 1 cut(s) 383
BisI GCNGC 2 cut(s) 258, 293
BlsI GCNGC 2 cut(s) 259, 294
BmsI GCATC 2 cut(s) 130, 151
Bse1I ACTGG 1 cut(s) 160
Bse3DI GCAATG 1 cut(s) 195
BseMI GCAATG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 160
BseXI GCAGC 2 cut(s) 244, 279
Bsh1236I CGCG 1 cut(s) 36
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 2 cut(s) 245, 326
BsiEI CGRYCG 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 27
BsiSI CCGG 1 cut(s) 374
BsmAI GTCTC 2 cut(s) 189, 210
BsnI GGCC 2 cut(s) 245, 326
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 3 cut(s) 49, 274, 383
BspACI CCGC 3 cut(s) 34, 143, 371
BspANI GGCC 2 cut(s) 245, 326
BspFNI CGCG 1 cut(s) 36
BspHI TCATGA 2 cut(s) 13, 106
BspMAI CTGCAG 1 cut(s) 334
BsrDI GCAATG 1 cut(s) 195
BsrI ACTGG 1 cut(s) 160
BssMI GATC 3 cut(s) 49, 274, 383
Bst4CI ACNGT 1 cut(s) 101
Bst6I CTCTTC 1 cut(s) 256
BstC8I GCNNGC 2 cut(s) 95, 262
BstFNI CGCG 1 cut(s) 36
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 2 cut(s) 137, 202
BstKTI GATC 3 cut(s) 52, 277, 386
BstMAI GTCTC 2 cut(s) 189, 210
BstMBI GATC 3 cut(s) 49, 274, 383
BstMCI CGRYCG 1 cut(s) 103
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstSFI CTRYAG 1 cut(s) 330
BstUI CGCG 1 cut(s) 36
BstV1I GCAGC 2 cut(s) 244, 279
BstX2I RGATCY 1 cut(s) 383
BstYI RGATCY 1 cut(s) 383
BsuRI GGCC 2 cut(s) 245, 326
BtsI GCAGTG 2 cut(s) 327, 339
BtsIMutI CAGTG 2 cut(s) 327, 339
Cac8I GCNNGC 2 cut(s) 95, 262
CciI TCATGA 2 cut(s) 13, 106
CfoI GCGC 2 cut(s) 137, 202
Csp6I GTAC 1 cut(s) 153
CviAII CATG 3 cut(s) 14, 107, 130
CviJI RGCY 8 cut(s) 25, 46, 245, 257, 292, 307, 326, 340
CviKI_1 RGCY 8 cut(s) 25, 46, 245, 257, 292, 307, 326, 340
CviQI GTAC 1 cut(s) 153
DpnI GATC 3 cut(s) 51, 276, 385
DpnII GATC 3 cut(s) 49, 274, 383
DrdI GACNNNNNNGTC 1 cut(s) 224
DseDI GACNNNNNNGTC 1 cut(s) 224
EaeI YGGCCR 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 256
EarI CTCTTC 1 cut(s) 256
EciI GGCGGA 1 cut(s) 360
Ecl136II GAGCTC 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 27
Eco47III AGCGCT 1 cut(s) 136
Eco53kI GAGCTC 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 237
EcoICRI GAGCTC 1 cut(s) 25
EcoT38I GRGCYC 1 cut(s) 27
FaeI CATG 3 cut(s) 17, 110, 133
FaiI YATR 5 cut(s) 15, 57, 108, 131, 230
FatI CATG 3 cut(s) 13, 106, 129
FbaI TGATCA 2 cut(s) 49, 274
Fnu4HI GCNGC 2 cut(s) 258, 293
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 2 cut(s) 258, 293
FspBI CTAG 2 cut(s) 167, 302
GlaI GCGC 2 cut(s) 136, 201
GluI GCNGC 2 cut(s) 258, 293
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 2 cut(s) 245, 326
HapII CCGG 1 cut(s) 374
HhaI GCGC 2 cut(s) 137, 202
Hin1II CATG 3 cut(s) 17, 110, 133
Hin6I GCGC 2 cut(s) 135, 200
HinP1I GCGC 2 cut(s) 135, 200
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HinfI GANTC 1 cut(s) 416
HpaI GTTAAC 1 cut(s) 67
HpaII CCGG 1 cut(s) 374
HphI GGTGA 3 cut(s) 170, 247, 391
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 4 cut(s) 14, 107, 116, 302
Hpy8I GTNNAC 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4V TGCA 3 cut(s) 83, 164, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
Hsp92II CATG 3 cut(s) 17, 110, 133
HspAI GCGC 2 cut(s) 135, 200
Ksp22I TGATCA 2 cut(s) 49, 274
KspAI GTTAAC 1 cut(s) 67
Kzo9I GATC 3 cut(s) 49, 274, 383
LpnPI CCDG 4 cut(s) 101, 107, 141, 387
Lsp1109I GCAGC 2 cut(s) 244, 279
LweI GCATC 2 cut(s) 130, 151
MaeI CTAG 2 cut(s) 167, 302
MaeIII GTNAC 1 cut(s) 86
MalI GATC 3 cut(s) 51, 276, 385
MboI GATC 3 cut(s) 49, 274, 383
MboII GAAGA 1 cut(s) 243
MflI RGATCY 1 cut(s) 383
MhlI GDGCHC 1 cut(s) 27
MlsI TGGCCA 1 cut(s) 245
MluCI AATT 3 cut(s) 179, 191, 398
MluNI TGGCCA 1 cut(s) 245
MlyI GAGTC 1 cut(s) 425
MnlI CCTC 4 cut(s) 213, 231, 370, 406
Mox20I TGGCCA 1 cut(s) 245
MscI TGGCCA 1 cut(s) 245
MseI TTAA 1 cut(s) 66
MslI CAYNNNNRTG 2 cut(s) 233, 332
Msp20I TGGCCA 1 cut(s) 245
MspA1I CMGCKG 1 cut(s) 257
MspI CCGG 1 cut(s) 374
MvnI CGCG 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeII GATC 3 cut(s) 49, 274, 383
NlaIII CATG 3 cut(s) 17, 110, 133
OliI CACNNNNGTG 1 cut(s) 332
PagI TCATGA 2 cut(s) 13, 106
PcsI WCGNNNNNNNCGW 1 cut(s) 361
PkrI GCNGC 2 cut(s) 259, 294
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
Psp124BI GAGCTC 1 cut(s) 27
PstI CTGCAG 1 cut(s) 334
PsuI RGATCY 1 cut(s) 383
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
RseI CAYNNNNRTG 2 cut(s) 233, 332
SacI GAGCTC 1 cut(s) 27
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 2 cut(s) 258, 293
Sau3AI GATC 3 cut(s) 49, 274, 383
SchI GAGTC 1 cut(s) 425
SduI GDGCHC 1 cut(s) 27
SetI ASST 6 cut(s) 27, 48, 237, 259, 294, 381
SfaNI GCATC 2 cut(s) 130, 151
SfcI CTRYAG 1 cut(s) 330
SmiMI CAYNNNNRTG 2 cut(s) 233, 332
Sse9I AATT 3 cut(s) 179, 191, 398
SsiI CCGC 3 cut(s) 34, 143, 371
SspMI CTAG 2 cut(s) 167, 302
SstI GAGCTC 1 cut(s) 27
TaaI ACNGT 1 cut(s) 101
TasI AATT 3 cut(s) 179, 191, 398
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 2 cut(s) 334, 339
TseI GCWGC 2 cut(s) 257, 292
TspDTI ATGAA 3 cut(s) 123, 184, 271
TspGWI ACGGA 1 cut(s) 353
TspRI CASTG 2 cut(s) 334, 339
XapI RAATTY 1 cut(s) 191
XbaI TCTAGA 1 cut(s) 301
XspI CTAG 2 cut(s) 167, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.