Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8092570.1

Orthogroup ID

OG0010265

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 594

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8092570.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 500 bp

caggagccggcgccggtggaggagctcctgaacctgctctactttggctccttgtttgatgttaagacgcagagtgacttcacctcgattatgttcaccaggagccacgagagagggtgctgcttgacctatgacaccgtcaccgatgacgacactgatttgctctccgagaaggacttggatttgctctcctccctcagtggtttgttgatctctaggcctgtcgatacgagcttatctcacaagaatgctctgcagcgctgcattgaccacgccaagctctggctcgctaagtcggaccagcccattgagcctgatgctactgttacatatgcgagtttgagggagaggctgagtaggataatgtcttcggactacttcaccatcacgcctgaaatgaaagctcctgaggaaatggcagctgctgctggcggaaactttgctccgtttcaggtgaggggtgtggatgtggacagtttatttgtacagttacagcagca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1618

Protein Analysis

166

Amino Acids

18.52

Weight (kDa)

4.49

Isoelectric Point (pI)

52.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27090
fragaria_vesca	FvH4_4g35680 FvH4_4g35680
malus_domestica	MD13G1080700.v1.1 MD16G1080200.v1.1
prunus_persica	Prupe.1G265800_v2.0.a1
pyrus_communis	pycom13g06980 pycom16g06940
rosa_chinensis	RchiOBHm_Chr4g0445281
rosa_laevigata	RLG00000005752
rosa_multiflora	Rmu_co8092570.1_g000001 Rmu_sc0000050.1_g000024 Rmu_sc0007093.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385790
rosa_rugosa	Rorug04G0360000 Rorug04G0360100
rosa_samantha	Rh4AG421500 Rh4BG433400 Rh4CG448100 Rh4DG429400
rosa_wichuraiana	Rw4G036150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	42
AccB1I	GGYRCC	1 cut(s)	10
AccB7I	CCANNNNNTGG	1 cut(s)	282
AciI	CCGC	1 cut(s)	432
AcyI	GRCGYC	1 cut(s)	11
AfaI	GTAC	1 cut(s)	486
AfeI	AGCGCT	1 cut(s)	260
AfiI	CCNNNNNNNGG	1 cut(s)	282
AjnI	CCWGG	1 cut(s)	98
AluBI	AGCT	5 cut(s)	25, 234, 280, 404, 422
AluI	AGCT	5 cut(s)	25, 234, 280, 404, 422
Alw21I	GWGCWC	1 cut(s)	27
AlwNI	CAGNNNCTG	1 cut(s)	425
Aor51HI	AGCGCT	1 cut(s)	260
AoxI	GGCC	1 cut(s)	218
ApeKI	GCWGC	7 cut(s)	120, 256, 261, 419, 422, 425, 496
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
AspLEI	GCGC	2 cut(s)	13, 261
AspS9I	GGNCC	1 cut(s)	298
AsuHPI	GGTGA	5 cut(s)	73, 88, 133, 373, 466
AvaII	GGWCC	1 cut(s)	298
AxyI	CCTNAGG	1 cut(s)	408
BanI	GGYRCC	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	27
BauI	CACGAG	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	6 cut(s)	107, 248, 268, 409, 412, 431
BccI	CCATC	1 cut(s)	392
BciT130I	CCWGG	1 cut(s)	100
BfaI	CTAG	1 cut(s)	216
BfmI	CTRYAG	1 cut(s)	254
BfoI	RGCGCY	2 cut(s)	14, 262
BfuAI	ACCTGC	1 cut(s)	42
BisI	GCNGC	7 cut(s)	121, 257, 262, 420, 423, 426, 497
BlsI	GCNGC	7 cut(s)	122, 258, 263, 421, 424, 427, 498
Bme1390I	CCNGG	1 cut(s)	100
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	4 cut(s)	6, 12, 49, 104
BmrFI	CCNGG	1 cut(s)	100
BmsI	GCATC	1 cut(s)	307
BpiI	GAAGAC	1 cut(s)	360
BplI	GAGNNNNNCTC	2 cut(s)	223, 255
BsaHI	GRCGYC	1 cut(s)	11
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse118I	RCCGGY	2 cut(s)	7, 13
Bse21I	CCTNAGG	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	100
BseGI	GGATG	1 cut(s)	472
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMII	CTCAG	3 cut(s)	211, 344, 399
BseRI	GAGGAG	2 cut(s)	35, 181
BseXI	GCAGC	6 cut(s)	107, 248, 268, 409, 412, 431
BshFI	GGCC	1 cut(s)	220
BshNI	GGYRCC	1 cut(s)	10
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	2 cut(s)	8, 14
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	1 cut(s)	220
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp1407I	TGTACA	1 cut(s)	484
Bsp143I	GATC	1 cut(s)	210
BspACI	CCGC	1 cut(s)	432
BspANI	GGCC	1 cut(s)	220
BspCNI	CTCAG	3 cut(s)	210, 345, 400
BspLI	GGNNCC	4 cut(s)	6, 12, 49, 104
BspMAI	CTGCAG	1 cut(s)	258
BspMI	ACCTGC	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	10
BsrFI	RCCGGY	2 cut(s)	7, 13
BsrGI	TGTACA	1 cut(s)	484
BssAI	RCCGGY	2 cut(s)	7, 13
BssMI	GATC	1 cut(s)	210
BssNI	GRCGYC	1 cut(s)	11
BssSI	CACGAG	1 cut(s)	107
Bst2BI	CACGAG	1 cut(s)	107
Bst2UI	CCWGG	1 cut(s)	100
Bst4CI	ACNGT	4 cut(s)	139, 325, 476, 489
BstACI	GRCGYC	1 cut(s)	11
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstAUI	TGTACA	1 cut(s)	484
BstC8I	GCNNGC	3 cut(s)	9, 288, 430
BstDEI	CTNAG	4 cut(s)	197, 291, 353, 408
BstF5I	GGATG	1 cut(s)	472
BstH2I	RGCGCY	2 cut(s)	14, 262
BstHHI	GCGC	2 cut(s)	13, 261
BstKTI	GATC	1 cut(s)	213
BstMBI	GATC	1 cut(s)	210
BstMWI	GCNNNNNNNGC	2 cut(s)	310, 425
BstNI	CCWGG	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	98
BstSFI	CTRYAG	1 cut(s)	254
BstV1I	GCAGC	6 cut(s)	107, 248, 268, 409, 412, 431
BstV2I	GAAGAC	1 cut(s)	360
Bsu36I	CCTNAGG	1 cut(s)	408
BsuRI	GGCC	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	472
BtsIMutI	CAGTG	2 cut(s)	153, 205
BveI	ACCTGC	1 cut(s)	42
Cac8I	GCNNGC	3 cut(s)	9, 288, 430
CaiI	CAGNNNCTG	1 cut(s)	425
CfoI	GCGC	2 cut(s)	13, 261
Cfr10I	RCCGGY	2 cut(s)	7, 13
Cfr13I	GGNCC	1 cut(s)	298
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	485
CviQI	GTAC	1 cut(s)	485
DdeI	CTNAG	4 cut(s)	197, 291, 353, 408
DinI	GGCGCC	1 cut(s)	12
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
EciI	GGCGGA	1 cut(s)	447
Ecl136II	GAGCTC	1 cut(s)	25
Eco147I	AGGCCT	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	298
Eco47III	AGCGCT	1 cut(s)	260
Eco53kI	GAGCTC	1 cut(s)	25
Eco81I	CCTNAGG	1 cut(s)	408
EcoICRI	GAGCTC	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	98
EcoT38I	GRGCYC	1 cut(s)	27
EgeI	GGCGCC	1 cut(s)	12
EheI	GGCGCC	1 cut(s)	12
FaiI	YATR	4 cut(s)	92, 132, 331, 333
FauNDI	CATATG	1 cut(s)	331
Fnu4HI	GCNGC	7 cut(s)	121, 257, 262, 420, 423, 426, 497
FokI	GGATG	1 cut(s)	479
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	7 cut(s)	121, 257, 262, 420, 423, 426, 497
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	2 cut(s)	12, 260
GluI	GCNGC	7 cut(s)	121, 257, 262, 420, 423, 426, 497
HaeII	RGCGCY	2 cut(s)	14, 262
HaeIII	GGCC	1 cut(s)	220
HapII	CCGG	2 cut(s)	8, 14
HgaI	GACGC	1 cut(s)	76
HhaI	GCGC	2 cut(s)	13, 261
Hin1I	GRCGYC	1 cut(s)	11
Hin6I	GCGC	2 cut(s)	11, 259
HinP1I	GCGC	2 cut(s)	11, 259
HpaII	CCGG	2 cut(s)	8, 14
HphI	GGTGA	5 cut(s)	73, 88, 133, 373, 466
Hpy166II	GTNNAC	2 cut(s)	96, 472
Hpy188I	TCNGA	3 cut(s)	169, 298, 373
Hpy188III	TCNNGA	2 cut(s)	28, 407
Hpy8I	GTNNAC	2 cut(s)	96, 472
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	4 cut(s)	139, 325, 476, 489
HpyCH4V	TGCA	2 cut(s)	256, 264
HpyF10VI	GCNNNNNNNGC	2 cut(s)	310, 425
HpyF3I	CTNAG	4 cut(s)	197, 291, 353, 408
Hsp92I	GRCGYC	1 cut(s)	11
HspAI	GCGC	2 cut(s)	11, 259
KasI	GGCGCC	1 cut(s)	10
KroI	GCCGGC	1 cut(s)	7
KroNI	GCCGGC	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	210
LmnI	GCTCC	7 cut(s)	4, 22, 30, 53, 102, 409, 448
Lsp1109I	GCAGC	6 cut(s)	107, 248, 268, 409, 412, 431
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	1 cut(s)	216
MaeIII	GTNAC	4 cut(s)	74, 139, 325, 489
MalI	GATC	1 cut(s)	212
MboI	GATC	1 cut(s)	210
MboII	GAAGA	1 cut(s)	360
MhlI	GDGCHC	1 cut(s)	27
Mly113I	GGCGCC	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	276
MnlI	CCTC	9 cut(s)	13, 94, 107, 202, 206, 336, 342, 403, 450
MroNI	GCCGGC	1 cut(s)	7
MseI	TTAA	1 cut(s)	63
MslI	CAYNNNNRTG	1 cut(s)	246
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	2 cut(s)	8, 14
MspR9I	CCNGG	1 cut(s)	100
Mva1269I	GAATGC	1 cut(s)	253
MvaI	CCWGG	1 cut(s)	100
MwoI	GCNNNNNNNGC	2 cut(s)	310, 425
NaeI	GCCGGC	1 cut(s)	9
NarI	GGCGCC	1 cut(s)	11
NdeI	CATATG	1 cut(s)	331
NdeII	GATC	1 cut(s)	210
NgoMIV	GCCGGC	1 cut(s)	7
NlaIV	GGNNCC	4 cut(s)	6, 12, 49, 104
NmuCI	GTSAC	2 cut(s)	74, 139
PceI	AGGCCT	1 cut(s)	220
PctI	GAATGC	1 cut(s)	253
PdiI	GCCGGC	1 cut(s)	9
PflFI	GACNNNGTC	1 cut(s)	137
PflMI	CCANNNNNTGG	1 cut(s)	282
PkrI	GCNGC	7 cut(s)	122, 258, 263, 421, 424, 427, 498
PluTI	GGCGCC	1 cut(s)	14
Psp124BI	GAGCTC	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	98
PspGI	CCWGG	1 cut(s)	98
PspN4I	GGNNCC	4 cut(s)	6, 12, 49, 104
PspPI	GGNCC	1 cut(s)	298
PsrI	GAACNNNNNNTAC	2 cut(s)	23, 55
PstI	CTGCAG	1 cut(s)	258
PstNI	CAGNNNCTG	1 cut(s)	425
PsyI	GACNNNGTC	1 cut(s)	137
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	1 cut(s)	486
RsaNI	GTAC	1 cut(s)	485
RseI	CAYNNNNRTG	1 cut(s)	246
SacI	GAGCTC	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	7 cut(s)	121, 257, 262, 420, 423, 426, 497
Sau3AI	GATC	1 cut(s)	210
Sau96I	GGNCC	1 cut(s)	298
ScrFI	CCNGG	1 cut(s)	100
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	9 cut(s)	27, 36, 86, 131, 236, 282, 406, 424, 456
SfaNI	GCATC	1 cut(s)	307
SfcI	CTRYAG	1 cut(s)	254
SfoI	GGCGCC	1 cut(s)	12
SgrAI	CRCCGGYG	1 cut(s)	13
SinI	GGWCC	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	246
SseBI	AGGCCT	1 cut(s)	220
SsiI	CCGC	1 cut(s)	432
SspDI	GGCGCC	1 cut(s)	10
SspMI	CTAG	1 cut(s)	216
SstI	GAGCTC	1 cut(s)	27
StuI	AGGCCT	1 cut(s)	220
StyD4I	CCNGG	1 cut(s)	98
TaaI	ACNGT	4 cut(s)	139, 325, 476, 489
TaqI	TCGA	2 cut(s)	86, 225
TatI	WGTACW	1 cut(s)	484
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	2 cut(s)	160, 205
TseFI	GTSAC	2 cut(s)	74, 139
TseI	GCWGC	7 cut(s)	120, 256, 261, 419, 422, 425, 496
Tsp45I	GTSAC	2 cut(s)	74, 139
TspDTI	ATGAA	1 cut(s)	413
TspGWI	ACGGA	1 cut(s)	435
TspRI	CASTG	2 cut(s)	160, 205
Tth111I	GACNNNGTC	1 cut(s)	137
Van91I	CCANNNNNTGG	1 cut(s)	282
VpaK11BI	GGWCC	1 cut(s)	298
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.