Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007093.1

Orthogroup ID

OG0010265

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 3111

Gene Structure 3110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007093.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1049 bp

atggcagccacggcgggttccgaagtctccgacggcccggtcctcagcctcgtcaacaagcgcatccgcgccctccgcaagaagcagaaccgcatcctccagatggaggagtccctcgcccaaggcaaagtcctcaacaatgagcaaaaggaggtcctccgctccaagcccgccgtctccgtcctcatcgacgagctcgagaagcttcgccagcctctctccgtcgccgtcgccgaggaggtcagcctcgccgttcaggtctcctccgcccccgccgctactactaagcccgaagaagacgaaacgccgcccccgcccaatgcggcgcagcagagcggcgaatctgccgccgatgaggaccaccaccaccaccaccaccaggagccggcgccggtggaggagctcctgaacctgctctactttggctccttgtttgatgttaagacgcagagtgacttcacctcgattatgttcaccaggagccacgagagagggtgctgcttgacctatgacaccgtcaccgatgacgacactgatttgctctccgagaaggacttggatttgctctcctccctcagtggtttgttgatctctaggcctgtcgatacgagcttatctcacaagaatgctctgcagcgctgcattgaccacgccaagctctggctcgctaagtcggaccagcccattgagcctgatgctactgttacatatgcgagtttgagggagaggctgagtaggataatgtcttcggactacttcaccatcacgcctgaaatgaaagctcctgaggaaatggcagctgctgctggcggaaactttgctccgtttcaggtgaggggtgtggatgtggacagtttatttgtacagttacagcagcagaaggatgaggagacaccaaatcttcaaggacatgagaggggtgaaaatcaatcgggtcctgttgaggaagttcagaaggatgaatttgagacagaatatcctgcagaggttgtctcggttcaacaagaacaagtaaagctagaaacagaagtagagcatactgagagaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1618

Protein Analysis

349

Amino Acids

38.73

Weight (kDa)

4.69

Isoelectric Point (pI)

56.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27090
fragaria_vesca	FvH4_4g35680 FvH4_4g35680
malus_domestica	MD13G1080700.v1.1 MD16G1080200.v1.1
prunus_persica	Prupe.1G265800_v2.0.a1
pyrus_communis	pycom13g06980 pycom16g06940
rosa_chinensis	RchiOBHm_Chr4g0445281
rosa_laevigata	RLG00000005752
rosa_multiflora	Rmu_co8092570.1_g000001 Rmu_sc0000050.1_g000024 Rmu_sc0007093.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385790
rosa_rugosa	Rorug04G0360000 Rorug04G0360100
rosa_samantha	Rh4AG421500 Rh4BG433400 Rh4CG448100 Rh4DG429400
rosa_wichuraiana	Rw4G036150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	38
Acc36I	ACCTGC	1 cut(s)	420
AccB1I	GGYRCC	1 cut(s)	388
AccB7I	CCANNNNNTGG	1 cut(s)	660
AccBSI	CCGCTC	2 cut(s)	162, 336
AccII	CGCG	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	962
AcyI	GRCGYC	1 cut(s)	389
AfaI	GTAC	1 cut(s)	864
AfeI	AGCGCT	1 cut(s)	638
AfiI	CCNNNNNNNGG	5 cut(s)	103, 106, 379, 385, 660
AgsI	TTSAA	2 cut(s)	905, 1001
AjnI	CCWGG	2 cut(s)	378, 476
AluBI	AGCT	8 cut(s)	196, 205, 403, 612, 658, 782, 800, 1018
AluI	AGCT	8 cut(s)	196, 205, 403, 612, 658, 782, 800, 1018
Alw21I	GWGCWC	2 cut(s)	198, 405
Alw26I	GTCTC	6 cut(s)	31, 181, 265, 884, 962, 997
AlwNI	CAGNNNCTG	1 cut(s)	803
Ama87I	CYCGRG	1 cut(s)	197
Aor51HI	AGCGCT	1 cut(s)	638
AoxI	GGCC	2 cut(s)	34, 596
ApeKI	GCWGC	9 cut(s)	5, 328, 498, 634, 639, 797, 800, 803, 874
ApoI	RAATTY	1 cut(s)	962
ArsI	GACNNNNNNTTYG	2 cut(s)	842, 874
AspLEI	GCGC	5 cut(s)	63, 71, 328, 391, 639
AspS9I	GGNCC	6 cut(s)	35, 40, 154, 358, 676, 935
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	6 cut(s)	451, 466, 511, 751, 844, 932
AvaI	CYCGRG	1 cut(s)	197
AvaII	GGWCC	5 cut(s)	40, 154, 358, 676, 935
AxyI	CCTNAGG	1 cut(s)	786
BanI	GGYRCC	1 cut(s)	388
BanII	GRGCYC	2 cut(s)	198, 405
BauI	CACGAG	1 cut(s)	485
BbsI	GAAGAC	2 cut(s)	303, 738
Bbv12I	GWGCWC	2 cut(s)	198, 405
BbvCI	CCTCAGC	1 cut(s)	44
BbvI	GCAGC	9 cut(s)	17, 340, 485, 626, 646, 787, 790, 809, 886
BccI	CCATC	2 cut(s)	97, 770
BceAI	ACGGC	5 cut(s)	27, 49, 158, 212, 236
BciT130I	CCWGG	2 cut(s)	380, 478
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	6 cut(s)	31, 181, 265, 884, 962, 997
BfaI	CTAG	2 cut(s)	594, 1019
BfmI	CTRYAG	2 cut(s)	632, 981
BfoI	RGCGCY	2 cut(s)	392, 640
BfuAI	ACCTGC	1 cut(s)	420
Bme1390I	CCNGG	3 cut(s)	38, 380, 478
Bme18I	GGWCC	5 cut(s)	40, 154, 358, 676, 935
BmeT110I	CYCGRG	1 cut(s)	197
BmgT120I	GGNCC	6 cut(s)	35, 40, 154, 358, 676, 935
BmiI	GGNNCC	6 cut(s)	19, 384, 390, 427, 482, 936
BmrFI	CCNGG	3 cut(s)	38, 380, 478
BmsI	GCATC	3 cut(s)	72, 102, 685
BpiI	GAAGAC	2 cut(s)	303, 738
BplI	GAGNNNNNCTC	4 cut(s)	601, 633, 977, 1009
BpmI	CTGGAG	1 cut(s)	83
Bpu10I	CCTNAGC	1 cut(s)	44
BpuMI	CCSGG	1 cut(s)	38
BsaHI	GRCGYC	1 cut(s)	389
BsaI	GGTCTC	1 cut(s)	265
BsaJI	CCNNGG	3 cut(s)	9, 121, 234
BsaXI	ACNNNNNCTCC	2 cut(s)	410, 440
Bsc4I	CCNNNNNNNGG	5 cut(s)	103, 106, 379, 385, 660
Bse118I	RCCGGY	2 cut(s)	385, 391
Bse21I	CCTNAGG	1 cut(s)	786
BseBI	CCWGG	2 cut(s)	380, 478
BseDI	CCNNGG	3 cut(s)	9, 121, 234
BseGI	GGATG	5 cut(s)	63, 93, 850, 889, 964
BseLI	CCNNNNNNNGG	5 cut(s)	103, 106, 379, 385, 660
BseMII	CTCAG	5 cut(s)	58, 589, 722, 777, 1032
BseRI	GAGGAG	6 cut(s)	122, 251, 253, 413, 559, 902
BseXI	GCAGC	9 cut(s)	17, 340, 485, 626, 646, 787, 790, 809, 886
Bsh1236I	CGCG	1 cut(s)	69
BshFI	GGCC	2 cut(s)	36, 598
BshNI	GGYRCC	1 cut(s)	388
BsiHKAI	GWGCWC	2 cut(s)	198, 405
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	3 cut(s)	38, 386, 392
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	5 cut(s)	103, 106, 379, 385, 660
BsmAI	GTCTC	6 cut(s)	31, 181, 265, 884, 962, 997
BsmBI	CGTCTC	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	97
BsmI	GAATGC	1 cut(s)	631
BsnI	GGCC	2 cut(s)	36, 598
Bso31I	GGTCTC	1 cut(s)	265
BsoBI	CYCGRG	1 cut(s)	197
Bsp1286I	GDGCHC	2 cut(s)	198, 405
Bsp1407I	TGTACA	1 cut(s)	862
Bsp143I	GATC	1 cut(s)	588
BspANI	GGCC	2 cut(s)	36, 598
BspCNI	CTCAG	5 cut(s)	57, 588, 723, 778, 1033
BspFNI	CGCG	1 cut(s)	69
BspLI	GGNNCC	6 cut(s)	19, 384, 390, 427, 482, 936
BspMAI	CTGCAG	2 cut(s)	636, 985
BspMI	ACCTGC	1 cut(s)	420
BspT107I	GGYRCC	1 cut(s)	388
BspTNI	GGTCTC	1 cut(s)	265
BsrBI	CCGCTC	2 cut(s)	162, 336
BsrFI	RCCGGY	2 cut(s)	385, 391
BsrGI	TGTACA	1 cut(s)	862
BssAI	RCCGGY	2 cut(s)	385, 391
BssECI	CCNNGG	3 cut(s)	9, 121, 234
BssMI	GATC	1 cut(s)	588
BssNI	GRCGYC	1 cut(s)	389
BssSI	CACGAG	1 cut(s)	485
BssT1I	CCWWGG	1 cut(s)	121
Bst2BI	CACGAG	1 cut(s)	485
Bst2UI	CCWGG	2 cut(s)	380, 478
Bst4CI	ACNGT	4 cut(s)	517, 703, 854, 867
BstACI	GRCGYC	1 cut(s)	389
BstAPI	GCANNNNNTGC	1 cut(s)	803
BstAUI	TGTACA	1 cut(s)	862
BstC8I	GCNNGC	5 cut(s)	171, 212, 387, 666, 808
BstDEI	CTNAG	7 cut(s)	44, 285, 575, 669, 731, 786, 1041
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	5 cut(s)	63, 93, 850, 889, 964
BstFNI	CGCG	1 cut(s)	69
BstH2I	RGCGCY	2 cut(s)	392, 640
BstHHI	GCGC	5 cut(s)	63, 71, 328, 391, 639
BstKTI	GATC	1 cut(s)	591
BstMAI	GTCTC	6 cut(s)	31, 181, 265, 884, 962, 997
BstMBI	GATC	1 cut(s)	588
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 75, 202, 211, 275, 313, 688, 803
BstNI	CCWGG	2 cut(s)	380, 478
BstSCI	CCNGG	3 cut(s)	36, 378, 476
BstSFI	CTRYAG	2 cut(s)	632, 981
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	9 cut(s)	17, 340, 485, 626, 646, 787, 790, 809, 886
BstV2I	GAAGAC	2 cut(s)	303, 738
Bsu36I	CCTNAGG	1 cut(s)	786
BsuRI	GGCC	2 cut(s)	36, 598
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	5 cut(s)	63, 93, 850, 889, 964
BtsIMutI	CAGTG	2 cut(s)	531, 583
BveI	ACCTGC	1 cut(s)	420
Cac8I	GCNNGC	5 cut(s)	171, 212, 387, 666, 808
CaiI	CAGNNNCTG	1 cut(s)	803
CfoI	GCGC	5 cut(s)	63, 71, 328, 391, 639
Cfr10I	RCCGGY	2 cut(s)	385, 391
Cfr13I	GGNCC	6 cut(s)	35, 40, 154, 358, 676, 935
CseI	GACGC	1 cut(s)	454
Csp6I	GTAC	1 cut(s)	863
CviAII	CATG	1 cut(s)	911
CviQI	GTAC	1 cut(s)	863
DdeI	CTNAG	7 cut(s)	44, 285, 575, 669, 731, 786, 1041
DinI	GGCGCC	1 cut(s)	390
DpnI	GATC	1 cut(s)	590
DpnII	GATC	1 cut(s)	588
DrdI	GACNNNNNNGTC	1 cut(s)	38
DseDI	GACNNNNNNGTC	1 cut(s)	38
EciI	GGCGGA	2 cut(s)	256, 825
Ecl136II	GAGCTC	2 cut(s)	196, 403
Eco130I	CCWWGG	1 cut(s)	121
Eco147I	AGGCCT	1 cut(s)	598
Eco24I	GRGCYC	2 cut(s)	198, 405
Eco31I	GGTCTC	1 cut(s)	265
Eco47I	GGWCC	5 cut(s)	40, 154, 358, 676, 935
Eco47III	AGCGCT	1 cut(s)	638
Eco53kI	GAGCTC	2 cut(s)	196, 403
Eco81I	CCTNAGG	1 cut(s)	786
Eco88I	CYCGRG	1 cut(s)	197
EcoICRI	GAGCTC	2 cut(s)	196, 403
EcoO109I	RGGNCCY	2 cut(s)	154, 935
EcoRII	CCWGG	2 cut(s)	378, 476
EcoT14I	CCWWGG	1 cut(s)	121
EcoT38I	GRGCYC	2 cut(s)	198, 405
EgeI	GGCGCC	1 cut(s)	390
EheI	GGCGCC	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	121
Esp3I	CGTCTC	1 cut(s)	181
FaeI	CATG	1 cut(s)	914
FaiI	YATR	6 cut(s)	470, 510, 709, 711, 912, 1038
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	1 cut(s)	910
FauI	CCCGC	4 cut(s)	7, 178, 280, 321
FauNDI	CATATG	1 cut(s)	709
FokI	GGATG	5 cut(s)	50, 80, 857, 896, 971
FriOI	GRGCYC	2 cut(s)	198, 405
FspBI	CTAG	2 cut(s)	594, 1019
GlaI	GCGC	5 cut(s)	62, 70, 327, 390, 638
GsuI	CTGGAG	1 cut(s)	83
HaeII	RGCGCY	2 cut(s)	392, 640
HaeIII	GGCC	2 cut(s)	36, 598
HapII	CCGG	3 cut(s)	38, 386, 392
HgaI	GACGC	1 cut(s)	454
HhaI	GCGC	5 cut(s)	63, 71, 328, 391, 639
Hin1I	GRCGYC	1 cut(s)	389
Hin1II	CATG	1 cut(s)	914
Hin6I	GCGC	5 cut(s)	61, 69, 326, 389, 637
HinP1I	GCGC	5 cut(s)	61, 69, 326, 389, 637
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	2 cut(s)	110, 341
HpaII	CCGG	3 cut(s)	38, 386, 392
HphI	GGTGA	6 cut(s)	451, 466, 511, 751, 844, 932
Hpy166II	GTNNAC	3 cut(s)	55, 474, 850
Hpy188I	TCNGA	6 cut(s)	22, 31, 547, 676, 751, 954
Hpy188III	TCNNGA	4 cut(s)	100, 199, 406, 785
Hpy8I	GTNNAC	3 cut(s)	55, 474, 850
Hpy99I	CGWCG	4 cut(s)	35, 194, 227, 233
HpyAV	CCTTC	3 cut(s)	544, 874, 949
HpyCH4III	ACNGT	4 cut(s)	517, 703, 854, 867
HpyCH4V	TGCA	3 cut(s)	634, 642, 983
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 75, 202, 211, 275, 313, 688, 803
HpyF3I	CTNAG	7 cut(s)	44, 285, 575, 669, 731, 786, 1041
Hsp92I	GRCGYC	1 cut(s)	389
Hsp92II	CATG	1 cut(s)	914
HspAI	GCGC	5 cut(s)	61, 69, 326, 389, 637
KasI	GGCGCC	1 cut(s)	388
KroI	GCCGGC	1 cut(s)	385
KroNI	GCCGGC	1 cut(s)	387
Kzo9I	GATC	1 cut(s)	588
LmnI	GCTCC	8 cut(s)	167, 382, 400, 408, 431, 480, 787, 826
Lsp1109I	GCAGC	9 cut(s)	17, 340, 485, 626, 646, 787, 790, 809, 886
LweI	GCATC	3 cut(s)	72, 102, 685
MaeI	CTAG	2 cut(s)	594, 1019
MaeIII	GTNAC	4 cut(s)	452, 517, 703, 867
MalI	GATC	1 cut(s)	590
MbiI	CCGCTC	2 cut(s)	162, 336
MboI	GATC	1 cut(s)	588
MboII	GAAGA	4 cut(s)	305, 308, 738, 893
MhlI	GDGCHC	2 cut(s)	198, 405
MluCI	AATT	1 cut(s)	962
Mly113I	GGCGCC	1 cut(s)	389
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	2 cut(s)	54, 654
MroNI	GCCGGC	1 cut(s)	385
MseI	TTAA	1 cut(s)	441
MslI	CAYNNNNRTG	1 cut(s)	624
MspA1I	CMGCKG	1 cut(s)	800
MspI	CCGG	3 cut(s)	38, 386, 392
MspR9I	CCNGG	3 cut(s)	38, 380, 478
Mva1269I	GAATGC	1 cut(s)	631
MvaI	CCWGG	2 cut(s)	380, 478
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	8 cut(s)	11, 75, 202, 211, 275, 313, 688, 803
NaeI	GCCGGC	1 cut(s)	387
NarI	GGCGCC	1 cut(s)	389
NciI	CCSGG	1 cut(s)	38
NdeI	CATATG	1 cut(s)	709
NdeII	GATC	1 cut(s)	588
NgoMIV	GCCGGC	1 cut(s)	385
NlaIII	CATG	1 cut(s)	914
NlaIV	GGNNCC	6 cut(s)	19, 384, 390, 427, 482, 936
NmeAIII	GCCGAG	1 cut(s)	259
NmuCI	GTSAC	2 cut(s)	452, 517
PaeR7I	CTCGAG	1 cut(s)	197
PceI	AGGCCT	1 cut(s)	598
PcsI	WCGNNNNNNNCGW	2 cut(s)	195, 231
PctI	GAATGC	1 cut(s)	631
PdiI	GCCGGC	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	341
PflFI	GACNNNGTC	1 cut(s)	515
PflMI	CCANNNNNTGG	1 cut(s)	660
PleI	GAGTC	1 cut(s)	118
PluTI	GGCGCC	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	118
PpuMI	RGGWCCY	2 cut(s)	154, 935
Psp124BI	GAGCTC	2 cut(s)	198, 405
Psp5II	RGGWCCY	2 cut(s)	154, 935
Psp6I	CCWGG	2 cut(s)	378, 476
PspGI	CCWGG	2 cut(s)	378, 476
PspN4I	GGNNCC	6 cut(s)	19, 384, 390, 427, 482, 936
PspPI	GGNCC	6 cut(s)	35, 40, 154, 358, 676, 935
PspPPI	RGGWCCY	2 cut(s)	154, 935
PsrI	GAACNNNNNNTAC	2 cut(s)	401, 433
PstI	CTGCAG	2 cut(s)	636, 985
PstNI	CAGNNNCTG	1 cut(s)	803
PsyI	GACNNNGTC	1 cut(s)	515
PvuII	CAGCTG	1 cut(s)	800
RsaI	GTAC	1 cut(s)	864
RsaNI	GTAC	1 cut(s)	863
RseI	CAYNNNNRTG	1 cut(s)	624
SacI	GAGCTC	2 cut(s)	198, 405
SaqAI	TTAA	1 cut(s)	441
Sau3AI	GATC	1 cut(s)	588
Sau96I	GGNCC	6 cut(s)	35, 40, 154, 358, 676, 935
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	3 cut(s)	38, 380, 478
SduI	GDGCHC	2 cut(s)	198, 405
SfaNI	GCATC	3 cut(s)	72, 102, 685
SfcI	CTRYAG	2 cut(s)	632, 981
SfoI	GGCGCC	1 cut(s)	390
Sfr274I	CTCGAG	1 cut(s)	197
SgrAI	CRCCGGYG	1 cut(s)	391
SinI	GGWCC	5 cut(s)	40, 154, 358, 676, 935
SlaI	CTCGAG	1 cut(s)	197
SmiMI	CAYNNNNRTG	1 cut(s)	624
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	1 cut(s)	962
SseBI	AGGCCT	1 cut(s)	598
SspDI	GGCGCC	1 cut(s)	388
SspMI	CTAG	2 cut(s)	594, 1019
SstI	GAGCTC	2 cut(s)	198, 405
StuI	AGGCCT	1 cut(s)	598
StyD4I	CCNGG	3 cut(s)	36, 378, 476
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	4 cut(s)	517, 703, 854, 867
TaqI	TCGA	4 cut(s)	189, 198, 464, 603
TasI	AATT	1 cut(s)	962
TatI	WGTACW	1 cut(s)	862
TauI	GCSGC	5 cut(s)	278, 310, 326, 339, 350
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	2 cut(s)	538, 583
TseFI	GTSAC	2 cut(s)	452, 517
TseI	GCWGC	9 cut(s)	5, 328, 498, 634, 639, 797, 800, 803, 874
Tsp45I	GTSAC	2 cut(s)	452, 517
TspDTI	ATGAA	2 cut(s)	791, 975
TspGWI	ACGGA	3 cut(s)	169, 211, 813
TspRI	CASTG	2 cut(s)	538, 583
Tth111I	GACNNNGTC	1 cut(s)	515
Van91I	CCANNNNNTGG	1 cut(s)	660
VpaK11BI	GGWCC	5 cut(s)	40, 154, 358, 676, 935
XapI	RAATTY	1 cut(s)	962
XhoI	CTCGAG	1 cut(s)	197
XspI	CTAG	2 cut(s)	594, 1019

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.