Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015442

Physical Location & Seq

Genomic Coordinates Forward (+)

9740508 .. 9742159

Gene Structure 1652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G27950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAAGGGTCTTCATCTCCACCTCGTCCTAGTCACCATGACGATCGTTGCCTCCATCGCCGCCGCTGCACCGGCTGCTCCCGGAGGAGCTCTGGCTGATGAATGCAACCAGGATTTTCAAAAGGTGACTTTGTGTTTGGACTTTGCGACCGGGAAGGCAACAATTCCGTCTAAGAAGTGTTGTGACGCTGTTGAAGATATCAAAGAAAGAGATCCAAAGTGTTTGTGTTTCGTTATACAACAAGCGAAGACAGGAGGACAAGCCTTGAAGGATCTTGGTGTTCAAGAAGACAAACTCATTCAACTCCCAACTTCTTGTCAGCTCCACAACGCTAGCATTACCAACTGTCCAAAGCTTCTAGGGATTTCACCTAGCTCGCCAGACGCAGCCGTATTCACAAACAATGCCACAACAACACCGGTGGCACCAGCAGGAAAGTCTCCGGCAACTCCAGCTACGTCCACGGATAAGGGAGGATCAGCTTCAGCAAAGGATGGTCACGCAGTCGTTGCTCTAGCCGTCGCTTTGATGGCCGTCTCCTTTGTCTTGACCTTGCCTAGACATGTCACATTAGGGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006810 GO:0006869 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008289 GO:0009505 GO:0009605 GO:0009607 GO:0009620 GO:0010876 GO:0012505 GO:0016020 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0033036 GO:0042335 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048856 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0071702 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

193

Amino Acids

19.76

Weight (kDa)

7.57

Isoelectric Point (pI)

34.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	16 - 116	1.6e-14	Probable lipid transfer
Tryp_alpha_amyl	PF00234	35 - 116	5.4e-08	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27950
fragaria_vesca	FvH4_4g23670
malus_domestica	MD16G1120100.v1.1
prunus_persica	Prupe.1G225100_v2.0.a1
pyrus_communis	pycom13g10450 pycom16g10260
rosa_chinensis	RchiOBHm_Chr4g0430161
rosa_laevigata	RLG00000007000
rosa_multiflora	Rmu_sc0004036.1_g000011
rosa_roxburghii	Rroxscaffold_5G00371950
rosa_rugosa	Rorug04G0240900
rosa_samantha	Rh4AG297700 Rh4BG304100 Rh4CG319600 Rh4DG301500
rosa_wichuraiana	Rw4G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	424
AciI	CCGC	2 cut(s)	60, 63
AclWI	GGATC	3 cut(s)	206, 279, 484
AcoI	YGGCCR	1 cut(s)	531
AcuI	CTGAAG	1 cut(s)	468
AflIII	ACRYGT	1 cut(s)	562
AgeI	ACCGGT	1 cut(s)	418
AgsI	TTSAA	5 cut(s)	119, 194, 268, 284, 302
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	6 cut(s)	89, 322, 355, 375, 455, 482
AluI	AGCT	6 cut(s)	89, 322, 355, 375, 455, 482
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	2 cut(s)	444, 541
AlwI	GGATC	3 cut(s)	206, 279, 484
AoxI	GGCC	1 cut(s)	531
ApeKI	GCWGC	3 cut(s)	65, 74, 386
ArsI	GACNNNNNNTTYG	2 cut(s)	118, 150
AsiGI	ACCGGT	1 cut(s)	418
AsuC2I	CCSGG	2 cut(s)	81, 151
AsuHPI	GGTGA	3 cut(s)	25, 136, 360
AsuNHI	GCTAGC	1 cut(s)	332
BanI	GGYRCC	1 cut(s)	424
BanII	GRGCYC	1 cut(s)	91
BbsI	GAAGAC	3 cut(s)	2, 254, 294
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	3 cut(s)	52, 61, 398
BccI	CCATC	3 cut(s)	62, 488, 523
BceAI	ACGGC	3 cut(s)	374, 503, 518
BciT130I	CCWGG	1 cut(s)	110
BcnI	CCSGG	2 cut(s)	81, 151
BcoDI	GTCTC	2 cut(s)	444, 541
BfaI	CTAG	6 cut(s)	29, 333, 359, 372, 515, 558
BisI	GCNGC	5 cut(s)	60, 63, 66, 75, 387
BlsI	GCNGC	5 cut(s)	61, 64, 67, 76, 388
Bme1390I	CCNGG	3 cut(s)	81, 110, 151
BmiI	GGNNCC	1 cut(s)	426
BmrFI	CCNGG	3 cut(s)	81, 110, 151
BmtI	GCTAGC	1 cut(s)	336
BpiI	GAAGAC	3 cut(s)	2, 254, 294
BpmI	CTGGAG	1 cut(s)	435
BpuMI	CCSGG	2 cut(s)	81, 151
BsaJI	CCNNGG	1 cut(s)	462
BsaWI	WCCGGW	1 cut(s)	418
Bse118I	RCCGGY	2 cut(s)	70, 418
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	462
BseGI	GGATG	2 cut(s)	499, 582
BseRI	GAGGAG	1 cut(s)	99
BseXI	GCAGC	3 cut(s)	52, 61, 398
BsgI	GTGCAG	1 cut(s)	51
Bsh1285I	CGRYCG	2 cut(s)	45, 150
BshFI	GGCC	1 cut(s)	533
BshNI	GGYRCC	1 cut(s)	424
BshTI	ACCGGT	1 cut(s)	418
BsiEI	CGRYCG	2 cut(s)	45, 150
BsiHKAI	GWGCWC	1 cut(s)	91
BsiSI	CCGG	5 cut(s)	71, 81, 150, 419, 443
BsmAI	GTCTC	2 cut(s)	444, 541
BsmBI	CGTCTC	1 cut(s)	541
BsmI	GAATGC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	533
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	4 cut(s)	42, 211, 271, 476
BspACI	CCGC	2 cut(s)	60, 63
BspANI	GGCC	1 cut(s)	533
BspLI	GGNNCC	1 cut(s)	426
BspOI	GCTAGC	1 cut(s)	336
BspPI	GGATC	3 cut(s)	206, 279, 484
BspT107I	GGYRCC	1 cut(s)	424
BsrFI	RCCGGY	2 cut(s)	70, 418
BssAI	RCCGGY	2 cut(s)	70, 418
BssECI	CCNNGG	1 cut(s)	462
BssMI	GATC	4 cut(s)	42, 211, 271, 476
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	1 cut(s)	347
BstAPI	GCANNNNNTGC	2 cut(s)	74, 509
BstC8I	GCNNGC	2 cut(s)	334, 377
BstDEI	CTNAG	1 cut(s)	171
BstDSI	CCRYGG	1 cut(s)	462
BstF5I	GGATG	2 cut(s)	499, 582
BstKTI	GATC	4 cut(s)	45, 214, 274, 479
BstMAI	GTCTC	2 cut(s)	444, 541
BstMBI	GATC	4 cut(s)	42, 211, 271, 476
BstMCI	CGRYCG	2 cut(s)	45, 150
BstMWI	GCNNNNNNNGC	7 cut(s)	56, 65, 71, 74, 452, 509, 530
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	566
BstSCI	CCNGG	3 cut(s)	79, 108, 149
BstV1I	GCAGC	3 cut(s)	52, 61, 398
BstV2I	GAAGAC	3 cut(s)	2, 254, 294
BstX2I	RGATCY	2 cut(s)	211, 271
BstYI	RGATCY	2 cut(s)	211, 271
BsuRI	GGCC	1 cut(s)	533
BtgI	CCRYGG	1 cut(s)	462
BtgZI	GCGATG	1 cut(s)	40
BtsCI	GGATG	2 cut(s)	499, 582
Cac8I	GCNNGC	2 cut(s)	334, 377
Cfr10I	RCCGGY	2 cut(s)	70, 418
CseI	GACGC	2 cut(s)	194, 392
CspAI	ACCGGT	1 cut(s)	418
CspCI	CAANNNNNGTGG	2 cut(s)	402, 437
CviAII	CATG	2 cut(s)	37, 563
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	4 cut(s)	44, 213, 273, 478
DpnII	GATC	4 cut(s)	42, 211, 271, 476
EaeI	YGGCCR	1 cut(s)	531
Ecl136II	GAGCTC	1 cut(s)	89
Eco24I	GRGCYC	1 cut(s)	91
Eco32I	GATATC	1 cut(s)	199
Eco53kI	GAGCTC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	468
EcoICRI	GAGCTC	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	108
EcoRV	GATATC	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	91
Esp3I	CGTCTC	1 cut(s)	541
FaeI	CATG	2 cut(s)	40, 566
FaiI	YATR	3 cut(s)	38, 236, 564
FatI	CATG	2 cut(s)	36, 562
Fnu4HI	GCNGC	5 cut(s)	60, 63, 66, 75, 387
FokI	GGATG	1 cut(s)	506
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	5 cut(s)	60, 63, 66, 75, 387
FspBI	CTAG	6 cut(s)	29, 333, 359, 372, 515, 558
GluI	GCNGC	5 cut(s)	60, 63, 66, 75, 387
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	1 cut(s)	533
HapII	CCGG	5 cut(s)	71, 81, 150, 419, 443
HgaI	GACGC	2 cut(s)	194, 392
Hin1II	CATG	2 cut(s)	40, 566
HindIII	AAGCTT	1 cut(s)	353
HpaII	CCGG	5 cut(s)	71, 81, 150, 419, 443
HphI	GGTGA	3 cut(s)	25, 136, 360
Hpy166II	GTNNAC	1 cut(s)	462
Hpy188III	TCNNGA	2 cut(s)	284, 547
Hpy8I	GTNNAC	1 cut(s)	462
Hpy99I	CGWCG	1 cut(s)	524
HpyAV	CCTTC	2 cut(s)	148, 262
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4IV	ACGT	1 cut(s)	458
HpyCH4V	TGCA	2 cut(s)	68, 105
HpyF10VI	GCNNNNNNNGC	7 cut(s)	56, 65, 71, 74, 452, 509, 530
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	1 cut(s)	458
Hsp92II	CATG	2 cut(s)	40, 566
Kzo9I	GATC	4 cut(s)	42, 211, 271, 476
LmnI	GCTCC	3 cut(s)	82, 86, 327
Lsp1109I	GCAGC	3 cut(s)	52, 61, 398
MaeI	CTAG	6 cut(s)	29, 333, 359, 372, 515, 558
MaeII	ACGT	1 cut(s)	458
MaeIII	GTNAC	5 cut(s)	31, 124, 182, 497, 565
MalI	GATC	4 cut(s)	44, 213, 273, 478
MboI	GATC	4 cut(s)	42, 211, 271, 476
MboII	GAAGA	3 cut(s)	206, 259, 299
MflI	RGATCY	2 cut(s)	211, 271
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	1 cut(s)	162
MnlI	CCTC	5 cut(s)	32, 61, 77, 248, 467
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	5 cut(s)	71, 81, 150, 419, 443
MspR9I	CCNGG	3 cut(s)	81, 110, 151
Mva1269I	GAATGC	1 cut(s)	107
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	7 cut(s)	56, 65, 71, 74, 452, 509, 530
NciI	CCSGG	2 cut(s)	81, 151
NdeII	GATC	4 cut(s)	42, 211, 271, 476
NheI	GCTAGC	1 cut(s)	332
NlaIII	CATG	2 cut(s)	40, 566
NlaIV	GGNNCC	1 cut(s)	426
NmuCI	GTSAC	5 cut(s)	31, 124, 182, 497, 565
NspI	RCATGY	1 cut(s)	566
PciI	ACATGT	1 cut(s)	562
PctI	GAATGC	1 cut(s)	107
PfoI	TCCNGGA	1 cut(s)	79
PinAI	ACCGGT	1 cut(s)	418
PkrI	GCNGC	5 cut(s)	61, 64, 67, 76, 388
Ple19I	CGATCG	1 cut(s)	45
PscI	ACATGT	1 cut(s)	562
Psp124BI	GAGCTC	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	426
PsuI	RGATCY	2 cut(s)	211, 271
PvuI	CGATCG	1 cut(s)	45
SacI	GAGCTC	1 cut(s)	91
SatI	GCNGC	5 cut(s)	60, 63, 66, 75, 387
Sau3AI	GATC	4 cut(s)	42, 211, 271, 476
ScrFI	CCNGG	3 cut(s)	81, 110, 151
SduI	GDGCHC	1 cut(s)	91
SgrAI	CRCCGGYG	1 cut(s)	418
Sse9I	AATT	1 cut(s)	162
SsiI	CCGC	2 cut(s)	60, 63
SspMI	CTAG	6 cut(s)	29, 333, 359, 372, 515, 558
SstI	GAGCTC	1 cut(s)	91
StyD4I	CCNGG	3 cut(s)	79, 108, 149
TaaI	ACNGT	1 cut(s)	347
TaiI	ACGT	1 cut(s)	461
TasI	AATT	1 cut(s)	162
TauI	GCSGC	2 cut(s)	62, 65
TseFI	GTSAC	5 cut(s)	31, 124, 182, 497, 565
TseI	GCWGC	3 cut(s)	65, 74, 386
Tsp45I	GTSAC	5 cut(s)	31, 124, 182, 497, 565
TspDTI	ATGAA	2 cut(s)	17, 114
TspGWI	ACGGA	2 cut(s)	156, 479
XceI	RCATGY	1 cut(s)	566
XspI	CTAG	6 cut(s)	29, 333, 359, 372, 515, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.