Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0015442

Physical Location & Seq

Genomic Coordinates Reverse (-)

26092829 .. 26094895

Gene Structure 2067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g23670.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGGCCTCCATTTAAAACCTTCGTCTCAGAAAAAGCAGCGGCGTCTATGGACAACGAAACCTCACGCCAAATCCACCGTCGAATTCCATACCGACGTTGACTCCAACGGCCCAGATTCACAGCTCTGCACACTCTTTTACCACTCAACGGCTCTATTAATTGCCCACACTCCACCTCCCTTCTTATTTATACAACCTTTTAACCTTTCACACAATCAAACCAAAGCTTTGATAAAAACTCCATTTCCCAAGTTAAGATCGATCACCATGACTATGGAGAAGAAGATGTTGATGGGTATGGCCGTGGTGGCAATGCTAGTGTGGGGCTCTTCCGGTGCGGCGGAGACGGTGGCGCAGAAGTGCAACGACCAGTTCCAGAAGGTGGCGGTGTGTCTGACCTACGCGACGGGGAAAGCGGCGACGCCGACCAAGGAGTGCTGTGAGTCGGTGAAGGGGCTAAAGGAGACCGAGCCGGAGTGCTTGTGCTATGTGATTCAGCAAGCCAACAGTGGATCCGAGGAGATCAAGAAGATGGGGATTCAGGTGGCTAAGTTGCTTCAGCTCCCTTCTGCATGCAGCTTGAAGAACGCCAGCGCCAGCAACTGTCCCGCGCTACTAGGGCTGGCCCCCAACTCCCCAGATGCTGCTATCTTCACAAATGCTACTACTACAGCTACGTCAGCAACACCCGCAACTTCTGGACAATCTGCTCCTGAAACGGCCACCGGAAACAGTAATGGAGTGACTAACCTTGGACCTGGTTATGCCGGTCTGGTGGTGGCGGTGGCTGTGTGCATCGTCTTCCTTGCCTTCCCACCGGCGGGTGGCCGGATTTGTGCGCCTCTAAGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006810 GO:0006869 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008289 GO:0009505 GO:0009605 GO:0009607 GO:0009620 GO:0010876 GO:0012505 GO:0016020 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0033036 GO:0042335 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048856 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0071702 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

285

Amino Acids

29.94

Weight (kDa)

8.94

Isoelectric Point (pI)

45.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	103 - 202	2.8e-14	Probable lipid transfer
Tryp_alpha_amyl	PF00234	121 - 202	4.9e-10	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27950
fragaria_vesca	FvH4_4g23670
malus_domestica	MD16G1120100.v1.1
prunus_persica	Prupe.1G225100_v2.0.a1
pyrus_communis	pycom13g10450 pycom16g10260
rosa_chinensis	RchiOBHm_Chr4g0430161
rosa_laevigata	RLG00000007000
rosa_multiflora	Rmu_sc0004036.1_g000011
rosa_roxburghii	Rroxscaffold_5G00371950
rosa_rugosa	Rorug04G0240900
rosa_samantha	Rh4AG297700 Rh4BG304100 Rh4CG319600 Rh4DG301500
rosa_wichuraiana	Rw4G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	382
AccII	CGCG	2 cut(s)	404, 611
AciI	CCGC	9 cut(s)	40, 338, 341, 386, 416, 609, 690, 782, 821
AclWI	GGATC	2 cut(s)	507, 520
AcoI	YGGCCR	3 cut(s)	300, 720, 826
AcsI	RAATTY	1 cut(s)	83
AcuI	CTGAAG	1 cut(s)	542
AcyI	GRCGYC	2 cut(s)	43, 422
AfiI	CCNNNNNNNGG	5 cut(s)	148, 382, 820, 821, 824
AgsI	TTSAA	1 cut(s)	583
AjnI	CCWGG	1 cut(s)	757
AluBI	AGCT	5 cut(s)	124, 227, 562, 579, 674
AluI	AGCT	5 cut(s)	124, 227, 562, 579, 674
Alw26I	GTCTC	3 cut(s)	30, 338, 458
AlwI	GGATC	2 cut(s)	507, 520
AlwNI	CAGNNNCTG	2 cut(s)	603, 644
AoxI	GGCC	6 cut(s)	4, 109, 300, 624, 720, 826
ApeKI	GCWGC	3 cut(s)	37, 576, 644
ApoI	RAATTY	1 cut(s)	83
ArsI	GACNNNNNNTTYG	2 cut(s)	63, 95
AseI	ATTAAT	1 cut(s)	158
AspLEI	GCGC	4 cut(s)	355, 596, 613, 841
AspS9I	GGNCC	4 cut(s)	4, 110, 625, 755
AsuHPI	GGTGA	2 cut(s)	256, 460
AvaII	GGWCC	1 cut(s)	755
BamHI	GGATCC	1 cut(s)	512
BanII	GRGCYC	1 cut(s)	329
BbsI	GAAGAC	1 cut(s)	793
BbvI	GCAGC	3 cut(s)	49, 588, 631
BccI	CCATC	2 cut(s)	286, 526
BceAI	ACGGC	4 cut(s)	124, 165, 287, 735
BciT130I	CCWGG	1 cut(s)	759
BcoDI	GTCTC	3 cut(s)	30, 338, 458
BfaI	CTAG	2 cut(s)	317, 617
BfmI	CTRYAG	1 cut(s)	669
BfoI	RGCGCY	1 cut(s)	597
BglI	GCCNNNNNGGC	1 cut(s)	308
BisI	GCNGC	6 cut(s)	38, 41, 339, 417, 577, 645
BlsI	GCNGC	6 cut(s)	39, 42, 340, 418, 578, 646
Bme1390I	CCNGG	1 cut(s)	759
Bme18I	GGWCC	1 cut(s)	755
BmgT120I	GGNCC	4 cut(s)	4, 110, 625, 755
BmiI	GGNNCC	2 cut(s)	514, 627
BmrFI	CCNGG	1 cut(s)	759
BmsI	GCATC	2 cut(s)	631, 804
BpiI	GAAGAC	1 cut(s)	793
Bsa29I	ATCGAT	1 cut(s)	260
BsaHI	GRCGYC	2 cut(s)	43, 422
BsaI	GGTCTC	1 cut(s)	458
BsaJI	CCNNGG	4 cut(s)	303, 429, 516, 751
BsaWI	WCCGGW	2 cut(s)	332, 725
BsaXI	ACNNNNNCTCC	6 cut(s)	86, 116, 160, 190, 467, 497
Bsc4I	CCNNNNNNNGG	5 cut(s)	148, 382, 820, 821, 824
Bse118I	RCCGGY	2 cut(s)	767, 817
Bse1I	ACTGG	1 cut(s)	370
Bse3DI	GCAATG	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	759
BseCI	ATCGAT	1 cut(s)	260
BseDI	CCNNGG	4 cut(s)	303, 429, 516, 751
BseLI	CCNNNNNNNGG	5 cut(s)	148, 382, 820, 821, 824
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	1 cut(s)	533
BseXI	GCAGC	3 cut(s)	49, 588, 631
BsgI	GTGCAG	1 cut(s)	112
Bsh1236I	CGCG	2 cut(s)	404, 611
BshFI	GGCC	6 cut(s)	6, 111, 302, 626, 722, 828
BshVI	ATCGAT	1 cut(s)	260
BsiSI	CCGG	6 cut(s)	333, 473, 726, 768, 818, 829
BslFI	GGGAC	1 cut(s)	591
BslI	CCNNNNNNNGG	5 cut(s)	148, 382, 820, 821, 824
BsmAI	GTCTC	3 cut(s)	30, 338, 458
BsmBI	CGTCTC	2 cut(s)	30, 338
BsmFI	GGGAC	1 cut(s)	591
BsnI	GGCC	6 cut(s)	6, 111, 302, 626, 722, 828
Bso31I	GGTCTC	1 cut(s)	458
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp143I	GATC	4 cut(s)	257, 261, 512, 522
BspACI	CCGC	9 cut(s)	40, 338, 341, 386, 416, 609, 690, 782, 821
BspANI	GGCC	6 cut(s)	6, 111, 302, 626, 722, 828
BspCNI	CTCAG	1 cut(s)	40
BspDI	ATCGAT	1 cut(s)	260
BspFNI	CGCG	2 cut(s)	404, 611
BspLI	GGNNCC	2 cut(s)	514, 627
BspPI	GGATC	2 cut(s)	507, 520
BspQI	GCTCTTC	1 cut(s)	334
BspTNI	GGTCTC	1 cut(s)	458
BsrDI	GCAATG	1 cut(s)	318
BsrFI	RCCGGY	2 cut(s)	767, 817
BsrI	ACTGG	1 cut(s)	370
BssAI	RCCGGY	2 cut(s)	767, 817
BssECI	CCNNGG	4 cut(s)	303, 429, 516, 751
BssMI	GATC	4 cut(s)	257, 261, 512, 522
BssNI	GRCGYC	2 cut(s)	43, 422
BssT1I	CCWWGG	2 cut(s)	429, 751
Bst2UI	CCWGG	1 cut(s)	759
Bst4CI	ACNGT	5 cut(s)	79, 349, 509, 605, 734
Bst6I	CTCTTC	1 cut(s)	334
BstACI	GRCGYC	2 cut(s)	43, 422
BstC8I	GCNNGC	5 cut(s)	501, 574, 592, 598, 624
BstDEI	CTNAG	3 cut(s)	27, 549, 845
BstDSI	CCRYGG	1 cut(s)	303
BstFNI	CGCG	2 cut(s)	404, 611
BstH2I	RGCGCY	1 cut(s)	597
BstHHI	GCGC	4 cut(s)	355, 596, 613, 841
BstKTI	GATC	4 cut(s)	260, 264, 515, 525
BstMAI	GTCTC	3 cut(s)	30, 338, 458
BstMBI	GATC	4 cut(s)	257, 261, 512, 522
BstMWI	GCNNNNNNNGC	4 cut(s)	308, 619, 680, 689
BstNI	CCWGG	1 cut(s)	759
BstNSI	RCATGY	1 cut(s)	576
BstSCI	CCNGG	1 cut(s)	757
BstSFI	CTRYAG	1 cut(s)	669
BstUI	CGCG	2 cut(s)	404, 611
BstV1I	GCAGC	3 cut(s)	49, 588, 631
BstV2I	GAAGAC	1 cut(s)	793
BstX2I	RGATCY	1 cut(s)	512
BstXI	CCANNNNNNTGG	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	512
Bsu15I	ATCGAT	1 cut(s)	260
BsuRI	GGCC	6 cut(s)	6, 111, 302, 626, 722, 828
BsuTUI	ATCGAT	1 cut(s)	260
BtgI	CCRYGG	1 cut(s)	303
BtsIMutI	CAGTG	1 cut(s)	514
Cac8I	GCNNGC	5 cut(s)	501, 574, 592, 598, 624
CaiI	CAGNNNCTG	2 cut(s)	603, 644
CfoI	GCGC	4 cut(s)	355, 596, 613, 841
Cfr10I	RCCGGY	2 cut(s)	767, 817
Cfr13I	GGNCC	4 cut(s)	4, 110, 625, 755
ClaI	ATCGAT	1 cut(s)	260
CseI	GACGC	2 cut(s)	32, 430
CsiI	ACCWGGT	1 cut(s)	757
CviAII	CATG	2 cut(s)	268, 573
DdeI	CTNAG	3 cut(s)	27, 549, 845
DpnI	GATC	4 cut(s)	259, 263, 514, 524
DpnII	GATC	4 cut(s)	257, 261, 512, 522
DraI	TTTAAA	1 cut(s)	15
EaeI	YGGCCR	3 cut(s)	300, 720, 826
Eam1104I	CTCTTC	1 cut(s)	334
EarI	CTCTTC	1 cut(s)	334
EciI	GGCGGA	1 cut(s)	356
Eco130I	CCWWGG	2 cut(s)	429, 751
Eco24I	GRGCYC	1 cut(s)	329
Eco31I	GGTCTC	1 cut(s)	458
Eco47I	GGWCC	1 cut(s)	755
Eco57I	CTGAAG	1 cut(s)	542
EcoRI	GAATTC	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	757
EcoT14I	CCWWGG	2 cut(s)	429, 751
EcoT38I	GRGCYC	1 cut(s)	329
ErhI	CCWWGG	2 cut(s)	429, 751
Esp3I	CGTCTC	2 cut(s)	30, 338
FaeI	CATG	2 cut(s)	271, 576
FaiI	YATR	9 cut(s)	49, 90, 191, 269, 275, 299, 489, 574, 765
FaqI	GGGAC	1 cut(s)	591
FatI	CATG	2 cut(s)	267, 572
FauI	CCCGC	3 cut(s)	616, 697, 814
Fnu4HI	GCNGC	6 cut(s)	38, 41, 339, 417, 577, 645
FriOI	GRGCYC	1 cut(s)	329
Fsp4HI	GCNGC	6 cut(s)	38, 41, 339, 417, 577, 645
FspBI	CTAG	2 cut(s)	317, 617
GlaI	GCGC	4 cut(s)	354, 595, 612, 840
GluI	GCNGC	6 cut(s)	38, 41, 339, 417, 577, 645
HaeII	RGCGCY	1 cut(s)	597
HaeIII	GGCC	6 cut(s)	6, 111, 302, 626, 722, 828
HapII	CCGG	6 cut(s)	333, 473, 726, 768, 818, 829
HgaI	GACGC	2 cut(s)	32, 430
HhaI	GCGC	4 cut(s)	355, 596, 613, 841
Hin1I	GRCGYC	2 cut(s)	43, 422
Hin1II	CATG	2 cut(s)	271, 576
Hin6I	GCGC	4 cut(s)	353, 594, 611, 839
HinP1I	GCGC	4 cut(s)	353, 594, 611, 839
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HindIII	AAGCTT	1 cut(s)	225
HinfI	GANTC	5 cut(s)	101, 116, 443, 493, 538
HpaII	CCGG	6 cut(s)	333, 473, 726, 768, 818, 829
HphI	GGTGA	2 cut(s)	256, 460
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	3 cut(s)	30, 396, 517
Hpy188III	TCNNGA	4 cut(s)	376, 526, 699, 713
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	4 cut(s)	83, 98, 409, 424
HpyAV	CCTTC	6 cut(s)	30, 190, 373, 445, 576, 820
HpyCH4III	ACNGT	5 cut(s)	79, 349, 509, 605, 734
HpyCH4IV	ACGT	2 cut(s)	96, 677
HpyCH4V	TGCA	5 cut(s)	129, 363, 572, 576, 795
HpyF10VI	GCNNNNNNNGC	4 cut(s)	308, 619, 680, 689
HpyF3I	CTNAG	3 cut(s)	27, 549, 845
HpySE526I	ACGT	2 cut(s)	96, 677
Hsp92I	GRCGYC	2 cut(s)	43, 422
Hsp92II	CATG	2 cut(s)	271, 576
HspAI	GCGC	4 cut(s)	353, 594, 611, 839
Kzo9I	GATC	4 cut(s)	257, 261, 512, 522
LguI	GCTCTTC	1 cut(s)	334
LmnI	GCTCC	2 cut(s)	567, 715
Lsp1109I	GCAGC	3 cut(s)	49, 588, 631
LweI	GCATC	2 cut(s)	631, 804
MabI	ACCWGGT	1 cut(s)	757
MaeI	CTAG	2 cut(s)	317, 617
MaeII	ACGT	2 cut(s)	96, 677
MaeIII	GTNAC	1 cut(s)	742
MalI	GATC	4 cut(s)	259, 263, 514, 524
MboI	GATC	4 cut(s)	257, 261, 512, 522
MboII	GAAGA	7 cut(s)	292, 295, 321, 541, 595, 643, 793
MflI	RGATCY	1 cut(s)	512
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	3 cut(s)	83, 159, 850
MlyI	GAGTC	2 cut(s)	95, 452
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	5 cut(s)	17, 72, 186, 511, 852
MseI	TTAA	5 cut(s)	14, 158, 201, 254, 853
MslI	CAYNNNNRTG	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	40
MspI	CCGG	6 cut(s)	333, 473, 726, 768, 818, 829
MspR9I	CCNGG	1 cut(s)	759
MvaI	CCWGG	1 cut(s)	759
MvnI	CGCG	2 cut(s)	404, 611
MwoI	GCNNNNNNNGC	4 cut(s)	308, 619, 680, 689
NdeII	GATC	4 cut(s)	257, 261, 512, 522
NlaIII	CATG	2 cut(s)	271, 576
NlaIV	GGNNCC	2 cut(s)	514, 627
NmuCI	GTSAC	1 cut(s)	742
NspI	RCATGY	1 cut(s)	576
PaeI	GCATGC	1 cut(s)	576
PciSI	GCTCTTC	1 cut(s)	334
PfeI	GAWTC	3 cut(s)	116, 493, 538
PflMI	CCANNNNNTGG	1 cut(s)	382
PkrI	GCNGC	6 cut(s)	39, 42, 340, 418, 578, 646
PleI	GAGTC	2 cut(s)	95, 451
PpsI	GAGTC	2 cut(s)	95, 451
PshBI	ATTAAT	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	757
PspGI	CCWGG	1 cut(s)	757
PspN4I	GGNNCC	2 cut(s)	514, 627
PspPI	GGNCC	4 cut(s)	4, 110, 625, 755
PstNI	CAGNNNCTG	2 cut(s)	603, 644
PsuI	RGATCY	1 cut(s)	512
RseI	CAYNNNNRTG	1 cut(s)	272
SapI	GCTCTTC	1 cut(s)	334
SaqAI	TTAA	5 cut(s)	14, 158, 201, 254, 853
SatI	GCNGC	6 cut(s)	38, 41, 339, 417, 577, 645
Sau3AI	GATC	4 cut(s)	257, 261, 512, 522
Sau96I	GGNCC	4 cut(s)	4, 110, 625, 755
SchI	GAGTC	2 cut(s)	95, 452
ScrFI	CCNGG	1 cut(s)	759
SduI	GDGCHC	1 cut(s)	329
SexAI	ACCWGGT	1 cut(s)	757
SfaNI	GCATC	2 cut(s)	631, 804
SfcI	CTRYAG	1 cut(s)	669
SgrAI	CRCCGGYG	1 cut(s)	817
SinI	GGWCC	1 cut(s)	755
SmiMI	CAYNNNNRTG	1 cut(s)	272
SphI	GCATGC	1 cut(s)	576
Sse9I	AATT	3 cut(s)	83, 159, 850
SsiI	CCGC	9 cut(s)	40, 338, 341, 386, 416, 609, 690, 782, 821
SspMI	CTAG	2 cut(s)	317, 617
StyD4I	CCNGG	1 cut(s)	757
StyI	CCWWGG	2 cut(s)	429, 751
TaaI	ACNGT	5 cut(s)	79, 349, 509, 605, 734
TaiI	ACGT	2 cut(s)	99, 680
TaqI	TCGA	2 cut(s)	81, 260
TaqII	GACCGA	1 cut(s)	482
TasI	AATT	3 cut(s)	83, 159, 850
TauI	GCSGC	3 cut(s)	43, 341, 419
TfiI	GAWTC	3 cut(s)	116, 493, 538
Tru1I	TTAA	5 cut(s)	14, 158, 201, 254, 853
Tru9I	TTAA	5 cut(s)	14, 158, 201, 254, 853
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	1 cut(s)	742
TseI	GCWGC	3 cut(s)	37, 576, 644
Tsp45I	GTSAC	1 cut(s)	742
TspRI	CASTG	1 cut(s)	514
Van91I	CCANNNNNTGG	1 cut(s)	382
VpaK11BI	GGWCC	1 cut(s)	755
VspI	ATTAAT	1 cut(s)	158
XapI	RAATTY	1 cut(s)	83
XceI	RCATGY	1 cut(s)	576
XspI	CTAG	2 cut(s)	317, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.