Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0015442

Physical Location & Seq

Genomic Coordinates Reverse (-)

53422470 .. 53424278

Gene Structure 1809 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00371950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGAGAAAATGTTGATGGGTATGGCCGTGTTGGCGATGTTAGTGTGGGGTTCGGCCGGTGCGGCGGAGACTGTGGCGGAAAAGTGCAACGACAAGTTCCAGAAGGTGGCGGTGTGTCTGACCTACGCGACGGGGAAAGCGGCGACGCCGACCAAGGAGTGCTGTGAGTCGGTGAAGGGGATCAAGGAGAGCGAGCCGGAGTGCTTGTGCTATGTGATTGAACAAGCCAACAGTGGGAGCGAGGAGATCAAGAAGATGGGGATTCAGGTGGCTAAGTTGCTTGAGCTCCCTTCTGCATGCAACTTGAAGAACGCCAGCGCCAGCAACTGTCCCGTGTTACTAGGGCTGGCTCCCAACTCACCAGAAGCTGCTATCTTCACAAATGCTACTACATCGACGACAACAACTCCTGCAGCTGCAACTTCCGGACAATCTGCGCCTGAAACCGCCTCTGCATCCGGTGGAGTGACTAAGCTCGGACCTGGTTATGCCGGTCTGGTGGTGGCCGTGGCTGTGTCCATCGTCTTCCTTGCATTCCCGCCGGCTGCTGGATCTGTGCGCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006810 GO:0006869 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008289 GO:0009505 GO:0009605 GO:0009607 GO:0009620 GO:0010876 GO:0012505 GO:0016020 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0033036 GO:0042335 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048856 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0071702 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

188

Amino Acids

19.06

Weight (kDa)

5.56

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	12 - 110	5.5e-15	Probable lipid transfer
Tryp_alpha_amyl	PF00234	29 - 110	1.5e-10	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27950
fragaria_vesca	FvH4_4g23670
malus_domestica	MD16G1120100.v1.1
prunus_persica	Prupe.1G225100_v2.0.a1
pyrus_communis	pycom13g10450 pycom16g10260
rosa_chinensis	RchiOBHm_Chr4g0430161
rosa_laevigata	RLG00000007000
rosa_multiflora	Rmu_sc0004036.1_g000011
rosa_roxburghii	Rroxscaffold_5G00371950
rosa_rugosa	Rorug04G0240900
rosa_samantha	Rh4AG297700 Rh4BG304100 Rh4CG319600 Rh4DG301500
rosa_wichuraiana	Rw4G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	106
AccII	CGCG	1 cut(s)	128
AccIII	TCCGGA	1 cut(s)	425
AciI	CCGC	7 cut(s)	62, 65, 77, 110, 140, 447, 539
AclWI	GGATC	2 cut(s)	188, 559
AcoI	YGGCCR	3 cut(s)	24, 54, 504
AcyI	GRCGYC	1 cut(s)	146
AfiI	CCNNNNNNNGG	3 cut(s)	106, 234, 548
AgsI	TTSAA	2 cut(s)	221, 307
AjnI	CCWGG	1 cut(s)	481
AluBI	AGCT	4 cut(s)	286, 368, 416, 475
AluI	AGCT	4 cut(s)	286, 368, 416, 475
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	2 cut(s)	188, 559
AlwNI	CAGNNNCTG	2 cut(s)	327, 368
Aor13HI	TCCGGA	1 cut(s)	425
AoxI	GGCC	3 cut(s)	24, 54, 504
ApeKI	GCWGC	4 cut(s)	368, 413, 416, 545
AspLEI	GCGC	3 cut(s)	320, 439, 561
AspS9I	GGNCC	1 cut(s)	479
AsuHPI	GGTGA	2 cut(s)	184, 351
AvaII	GGWCC	1 cut(s)	479
BanII	GRGCYC	1 cut(s)	288
BbsI	GAAGAC	1 cut(s)	517
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	4 cut(s)	355, 403, 425, 532
BccI	CCATC	3 cut(s)	10, 250, 527
BceAI	ACGGC	2 cut(s)	11, 491
BciT130I	CCWGG	1 cut(s)	483
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	1 cut(s)	341
BfmI	CTRYAG	1 cut(s)	411
BfoI	RGCGCY	1 cut(s)	321
BglI	GCCNNNNNGGC	2 cut(s)	32, 62
BisI	GCNGC	6 cut(s)	63, 141, 369, 414, 417, 546
BlsI	GCNGC	6 cut(s)	64, 142, 370, 415, 418, 547
Bme1390I	CCNGG	1 cut(s)	483
Bme18I	GGWCC	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	1 cut(s)	483
BmsI	GCATC	1 cut(s)	464
BpiI	GAAGAC	1 cut(s)	517
BpuEI	CTTGAG	1 cut(s)	302
BsaHI	GRCGYC	1 cut(s)	146
BsaJI	CCNNGG	2 cut(s)	153, 507
BsaWI	WCCGGW	2 cut(s)	425, 458
BsaXI	ACNNNNNCTCC	5 cut(s)	26, 191, 221, 391, 421
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 234, 548
Bse118I	RCCGGY	3 cut(s)	56, 491, 541
BseAI	TCCGGA	1 cut(s)	425
BseBI	CCWGG	1 cut(s)	483
BseDI	CCNNGG	2 cut(s)	153, 507
BseGI	GGATG	1 cut(s)	455
BseLI	CCNNNNNNNGG	3 cut(s)	106, 234, 548
BseRI	GAGGAG	1 cut(s)	257
BseX3I	CGGCCG	1 cut(s)	54
BseXI	GCAGC	4 cut(s)	355, 403, 425, 532
Bsh1236I	CGCG	1 cut(s)	128
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	3 cut(s)	26, 56, 506
BsiEI	CGRYCG	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	6 cut(s)	57, 197, 426, 459, 492, 542
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	3 cut(s)	106, 234, 548
BsmAI	GTCTC	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	315
BsmI	GAATGC	1 cut(s)	533
BsnI	GGCC	3 cut(s)	26, 56, 506
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp13I	TCCGGA	1 cut(s)	425
Bsp143I	GATC	3 cut(s)	180, 246, 551
BspACI	CCGC	7 cut(s)	62, 65, 77, 110, 140, 447, 539
BspANI	GGCC	3 cut(s)	26, 56, 506
BspEI	TCCGGA	1 cut(s)	425
BspFNI	CGCG	1 cut(s)	128
BspLI	GGNNCC	1 cut(s)	351
BspMAI	CTGCAG	1 cut(s)	415
BspPI	GGATC	2 cut(s)	188, 559
BsrFI	RCCGGY	3 cut(s)	56, 491, 541
BssAI	RCCGGY	3 cut(s)	56, 491, 541
BssECI	CCNNGG	2 cut(s)	153, 507
BssMI	GATC	3 cut(s)	180, 246, 551
BssNI	GRCGYC	1 cut(s)	146
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	483
Bst4CI	ACNGT	3 cut(s)	73, 233, 329
BstACI	GRCGYC	1 cut(s)	146
BstC8I	GCNNGC	6 cut(s)	194, 298, 316, 322, 348, 543
BstDEI	CTNAG	2 cut(s)	273, 471
BstDSI	CCRYGG	1 cut(s)	507
BstF5I	GGATG	1 cut(s)	455
BstFNI	CGCG	1 cut(s)	128
BstH2I	RGCGCY	1 cut(s)	321
BstHHI	GCGC	3 cut(s)	320, 439, 561
BstKTI	GATC	3 cut(s)	183, 249, 554
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	3 cut(s)	180, 246, 551
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 62
BstNI	CCWGG	1 cut(s)	483
BstNSI	RCATGY	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	481
BstSFI	CTRYAG	1 cut(s)	411
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	4 cut(s)	355, 403, 425, 532
BstV2I	GAAGAC	1 cut(s)	517
BstX2I	RGATCY	1 cut(s)	551
BstYI	RGATCY	1 cut(s)	551
BstZI	CGGCCG	1 cut(s)	54
BsuRI	GGCC	3 cut(s)	26, 56, 506
BtgI	CCRYGG	1 cut(s)	507
BtgZI	GCGATG	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	455
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	6 cut(s)	194, 298, 316, 322, 348, 543
CaiI	CAGNNNCTG	2 cut(s)	327, 368
CfoI	GCGC	3 cut(s)	320, 439, 561
Cfr10I	RCCGGY	3 cut(s)	56, 491, 541
Cfr13I	GGNCC	1 cut(s)	479
CseI	GACGC	1 cut(s)	154
CsiI	ACCWGGT	1 cut(s)	481
CviAII	CATG	1 cut(s)	297
DdeI	CTNAG	2 cut(s)	273, 471
DpnI	GATC	3 cut(s)	182, 248, 553
DpnII	GATC	3 cut(s)	180, 246, 551
EaeI	YGGCCR	3 cut(s)	24, 54, 504
EagI	CGGCCG	1 cut(s)	54
EciI	GGCGGA	2 cut(s)	80, 92
Ecl136II	GAGCTC	1 cut(s)	286
EclXI	CGGCCG	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	479
Eco52I	CGGCCG	1 cut(s)	54
Eco53kI	GAGCTC	1 cut(s)	286
EcoICRI	GAGCTC	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	153
EcoT38I	GRGCYC	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	1 cut(s)	300
FaiI	YATR	4 cut(s)	23, 213, 298, 489
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	1 cut(s)	296
FauI	CCCGC	1 cut(s)	546
Fnu4HI	GCNGC	6 cut(s)	63, 141, 369, 414, 417, 546
FokI	GGATG	1 cut(s)	442
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	6 cut(s)	63, 141, 369, 414, 417, 546
FspBI	CTAG	1 cut(s)	341
GlaI	GCGC	3 cut(s)	319, 438, 560
GluI	GCNGC	6 cut(s)	63, 141, 369, 414, 417, 546
HaeII	RGCGCY	1 cut(s)	321
HaeIII	GGCC	3 cut(s)	26, 56, 506
HapII	CCGG	6 cut(s)	57, 197, 426, 459, 492, 542
HgaI	GACGC	1 cut(s)	154
HhaI	GCGC	3 cut(s)	320, 439, 561
Hin1I	GRCGYC	1 cut(s)	146
Hin1II	CATG	1 cut(s)	300
Hin6I	GCGC	3 cut(s)	318, 437, 559
HinP1I	GCGC	3 cut(s)	318, 437, 559
HinfI	GANTC	2 cut(s)	167, 262
HpaII	CCGG	6 cut(s)	57, 197, 426, 459, 492, 542
HphI	GGTGA	2 cut(s)	184, 351
Hpy188I	TCNGA	3 cut(s)	120, 479, 566
Hpy188III	TCNNGA	3 cut(s)	100, 250, 426
Hpy99I	CGWCG	3 cut(s)	133, 148, 400
HpyAV	CCTTC	3 cut(s)	97, 169, 300
HpyCH4III	ACNGT	3 cut(s)	73, 233, 329
HpyCH4V	TGCA	7 cut(s)	87, 296, 300, 413, 419, 455, 533
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 62
HpyF3I	CTNAG	2 cut(s)	273, 471
Hsp92I	GRCGYC	1 cut(s)	146
Hsp92II	CATG	1 cut(s)	300
HspAI	GCGC	3 cut(s)	318, 437, 559
Kpn2I	TCCGGA	1 cut(s)	425
KroI	GCCGGC	1 cut(s)	541
KroNI	GCCGGC	1 cut(s)	543
Kzo9I	GATC	3 cut(s)	180, 246, 551
LmnI	GCTCC	3 cut(s)	237, 291, 355
Lsp1109I	GCAGC	4 cut(s)	355, 403, 425, 532
LweI	GCATC	1 cut(s)	464
MabI	ACCWGGT	1 cut(s)	481
MaeI	CTAG	1 cut(s)	341
MaeIII	GTNAC	2 cut(s)	336, 466
MalI	GATC	3 cut(s)	182, 248, 553
MboI	GATC	3 cut(s)	180, 246, 551
MboII	GAAGA	4 cut(s)	265, 319, 367, 517
MflI	RGATCY	1 cut(s)	551
MhlI	GDGCHC	1 cut(s)	288
MlyI	GAGTC	1 cut(s)	176
MnlI	CCTC	2 cut(s)	235, 460
MroI	TCCGGA	1 cut(s)	425
MroNI	GCCGGC	1 cut(s)	541
MspA1I	CMGCKG	1 cut(s)	416
MspI	CCGG	6 cut(s)	57, 197, 426, 459, 492, 542
MspR9I	CCNGG	1 cut(s)	483
Mva1269I	GAATGC	1 cut(s)	533
MvaI	CCWGG	1 cut(s)	483
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	32, 62
NaeI	GCCGGC	1 cut(s)	543
NdeII	GATC	3 cut(s)	180, 246, 551
NgoMIV	GCCGGC	1 cut(s)	541
NlaIII	CATG	1 cut(s)	300
NlaIV	GGNNCC	1 cut(s)	351
NmuCI	GTSAC	1 cut(s)	466
NspI	RCATGY	1 cut(s)	300
PaeI	GCATGC	1 cut(s)	300
PctI	GAATGC	1 cut(s)	533
PdiI	GCCGGC	1 cut(s)	543
PfeI	GAWTC	1 cut(s)	262
PflMI	CCANNNNNTGG	1 cut(s)	106
PkrI	GCNGC	6 cut(s)	64, 142, 370, 415, 418, 547
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
Psp124BI	GAGCTC	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	481
PspGI	CCWGG	1 cut(s)	481
PspN4I	GGNNCC	1 cut(s)	351
PspPI	GGNCC	1 cut(s)	479
PstI	CTGCAG	1 cut(s)	415
PstNI	CAGNNNCTG	2 cut(s)	327, 368
PsuI	RGATCY	1 cut(s)	551
PvuII	CAGCTG	1 cut(s)	416
SacI	GAGCTC	1 cut(s)	288
SatI	GCNGC	6 cut(s)	63, 141, 369, 414, 417, 546
Sau3AI	GATC	3 cut(s)	180, 246, 551
Sau96I	GGNCC	1 cut(s)	479
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	483
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	8 cut(s)	108, 125, 270, 288, 370, 418, 477, 484
SexAI	ACCWGGT	1 cut(s)	481
SfaNI	GCATC	1 cut(s)	464
SfcI	CTRYAG	1 cut(s)	411
SinI	GGWCC	1 cut(s)	479
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
SphI	GCATGC	1 cut(s)	300
SsiI	CCGC	7 cut(s)	62, 65, 77, 110, 140, 447, 539
SspMI	CTAG	1 cut(s)	341
SstI	GAGCTC	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	481
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	3 cut(s)	73, 233, 329
TaqI	TCGA	1 cut(s)	395
TauI	GCSGC	2 cut(s)	65, 143
TfiI	GAWTC	1 cut(s)	262
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	4 cut(s)	368, 413, 416, 545
Tsp45I	GTSAC	1 cut(s)	466
TspRI	CASTG	1 cut(s)	238
Van91I	CCANNNNNTGG	1 cut(s)	106
VpaK11BI	GGWCC	1 cut(s)	479
XceI	RCATGY	1 cut(s)	300
XspI	CTAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.