Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015442

Physical Location & Seq

Genomic Coordinates Reverse (-)

23876944 .. 23879447

Gene Structure 2504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G225100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGATGAAGAAGATGTTGGTGGTGGCGTTGTTTTTGATCGTTGGTTCGGTGAGGGAGGCGAGTGCGGAAGCGACTGTGGCGCAGAAGTGCAGCAACCAGTTTCAGAAGGTGGCGGTGTGCCTGAGCTACGCTACGGGGAAGGCGGAGACGCCGACGAAGGAGTGCTGCGAGTCGGTGAAGGGTATAAAGGACAGCGAGCCGGAGTGCTTGTGCTACGTCATGCAGCAGGCCAACAGCGGCAGCGACGAGATCAAGAAGATGGGGATCCAGGTGGCCAAGTTGCTTCAGCTCCCCACTGCATGCAGCTTAAAAAACGCCAGCGCCAGCGACTGTCCTAAGCTTCTAGGCATTCCTGCTGGCTCACCAGAGGCTGCTATCTTCAATAATAATGCTTCAACGGCAACTCCTTCTGCACCTGCCGGAAAATCAGCACCAACGAAGGCCGGCGACTCTAGTGGAATTACCAAGCCCGGACCCCACCATGCTGGTCTGATGGCAACGGCTGTGGCCATCATTTTCTTTACATTCCCTGTTGTTGGATCAATCTCCAATCTCTTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006810 GO:0006869 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008289 GO:0009505 GO:0009605 GO:0009607 GO:0009620 GO:0010876 GO:0012505 GO:0016020 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0033036 GO:0042335 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048856 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0071702 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

188

Amino Acids

19.3

Weight (kDa)

8.61

Isoelectric Point (pI)

38.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27950
fragaria_vesca	FvH4_4g23670
malus_domestica	MD16G1120100.v1.1
prunus_persica	Prupe.1G225100_v2.0.a1
pyrus_communis	pycom13g10450 pycom16g10260
rosa_chinensis	RchiOBHm_Chr4g0430161
rosa_laevigata	RLG00000007000
rosa_multiflora	Rmu_sc0004036.1_g000011
rosa_roxburghii	Rroxscaffold_5G00371950
rosa_rugosa	Rorug04G0240900
rosa_samantha	Rh4AG297700 Rh4BG304100 Rh4CG319600 Rh4DG301500
rosa_wichuraiana	Rw4G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	424
Acc36I	ACCTGC	1 cut(s)	424
AciI	CCGC	4 cut(s)	65, 113, 143, 237
AclWI	GGATC	3 cut(s)	259, 272, 547
AcoI	YGGCCR	2 cut(s)	273, 507
AcuI	CTGAAG	1 cut(s)	269
AcyI	GRCGYC	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	536
AgsI	TTSAA	2 cut(s)	382, 396
AjnI	CCWGG	1 cut(s)	267
AjuI	GAANNNNNNNTTGG	1 cut(s)	31
AluBI	AGCT	4 cut(s)	126, 289, 306, 340
AluI	AGCT	4 cut(s)	126, 289, 306, 340
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	3 cut(s)	259, 272, 547
AlwNI	CAGNNNCTG	2 cut(s)	330, 371
AoxI	GGCC	4 cut(s)	228, 273, 441, 507
ApeKI	GCWGC	6 cut(s)	90, 165, 223, 240, 303, 371
AspLEI	GCGC	2 cut(s)	82, 323
AspS9I	GGNCC	1 cut(s)	473
AsuC2I	CCSGG	1 cut(s)	471
AsuHPI	GGTGA	3 cut(s)	61, 187, 354
AvaII	GGWCC	1 cut(s)	473
BalI	TGGCCA	2 cut(s)	275, 509
BamHI	GGATCC	1 cut(s)	264
BbvI	GCAGC	6 cut(s)	102, 152, 235, 252, 315, 358
BccI	CCATC	3 cut(s)	253, 487, 518
BceAI	ACGGC	2 cut(s)	414, 516
BciT130I	CCWGG	1 cut(s)	269
BcnI	CCSGG	1 cut(s)	471
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	2 cut(s)	344, 453
BfoI	RGCGCY	1 cut(s)	324
BfuAI	ACCTGC	1 cut(s)	424
BisI	GCNGC	7 cut(s)	91, 166, 224, 238, 241, 304, 372
BlsI	GCNGC	7 cut(s)	92, 167, 225, 239, 242, 305, 373
Bme1390I	CCNGG	2 cut(s)	269, 471
Bme18I	GGWCC	1 cut(s)	473
BmgT120I	GGNCC	1 cut(s)	473
BmiI	GGNNCC	2 cut(s)	266, 475
BmrFI	CCNGG	2 cut(s)	269, 471
Bpu10I	CCTNAGC	2 cut(s)	122, 336
BpuMI	CCSGG	1 cut(s)	471
BsaBI	GATNNNNATC	1 cut(s)	263
BsaHI	GRCGYC	1 cut(s)	149
BsaXI	ACNNNNNCTCC	4 cut(s)	194, 224, 388, 418
Bsc4I	CCNNNNNNNGG	1 cut(s)	536
Bse118I	RCCGGY	1 cut(s)	443
Bse1I	ACTGG	1 cut(s)	97
Bse8I	GATNNNNATC	1 cut(s)	263
BseBI	CCWGG	1 cut(s)	269
BseJI	GATNNNNATC	1 cut(s)	263
BseLI	CCNNNNNNNGG	1 cut(s)	536
BseMII	CTCAG	1 cut(s)	113
BseNI	ACTGG	1 cut(s)	97
BseXI	GCAGC	6 cut(s)	102, 152, 235, 252, 315, 358
BsgI	GTGCAG	2 cut(s)	109, 396
BshFI	GGCC	4 cut(s)	230, 275, 443, 509
BsiSI	CCGG	4 cut(s)	200, 420, 444, 471
BslI	CCNNNNNNNGG	1 cut(s)	536
BsmAI	GTCTC	1 cut(s)	140
BsmBI	CGTCTC	1 cut(s)	140
BsmI	GAATGC	1 cut(s)	348
BsnI	GGCC	4 cut(s)	230, 275, 443, 509
Bsp143I	GATC	4 cut(s)	36, 249, 264, 539
BspACI	CCGC	4 cut(s)	65, 113, 143, 237
BspANI	GGCC	4 cut(s)	230, 275, 443, 509
BspCNI	CTCAG	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	266, 475
BspMI	ACCTGC	1 cut(s)	424
BspPI	GGATC	3 cut(s)	259, 272, 547
BsrFI	RCCGGY	1 cut(s)	443
BsrI	ACTGG	1 cut(s)	97
BssAI	RCCGGY	1 cut(s)	443
BssMI	GATC	4 cut(s)	36, 249, 264, 539
BssNI	GRCGYC	1 cut(s)	149
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	2 cut(s)	76, 332
BstACI	GRCGYC	1 cut(s)	149
BstC8I	GCNNGC	7 cut(s)	197, 228, 301, 319, 325, 358, 445
BstDEI	CTNAG	2 cut(s)	122, 336
BstH2I	RGCGCY	1 cut(s)	324
BstHHI	GCGC	2 cut(s)	82, 323
BstKTI	GATC	4 cut(s)	39, 252, 267, 542
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	4 cut(s)	36, 249, 264, 539
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 398
BstNI	CCWGG	1 cut(s)	269
BstNSI	RCATGY	1 cut(s)	303
BstSCI	CCNGG	2 cut(s)	267, 469
BstV1I	GCAGC	6 cut(s)	102, 152, 235, 252, 315, 358
BstX2I	RGATCY	1 cut(s)	264
BstXI	CCANNNNNNTGG	1 cut(s)	485
BstYI	RGATCY	1 cut(s)	264
BsuRI	GGCC	4 cut(s)	230, 275, 443, 509
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	1 cut(s)	294
BveI	ACCTGC	1 cut(s)	424
Cac8I	GCNNGC	7 cut(s)	197, 228, 301, 319, 325, 358, 445
CaiI	CAGNNNCTG	2 cut(s)	330, 371
CfoI	GCGC	2 cut(s)	82, 323
Cfr10I	RCCGGY	1 cut(s)	443
Cfr13I	GGNCC	1 cut(s)	473
CseI	GACGC	1 cut(s)	157
CspCI	CAANNNNNGTGG	2 cut(s)	486, 521
CviAII	CATG	3 cut(s)	220, 300, 482
DdeI	CTNAG	2 cut(s)	122, 336
DpnI	GATC	4 cut(s)	38, 251, 266, 541
DpnII	GATC	4 cut(s)	36, 249, 264, 539
EaeI	YGGCCR	2 cut(s)	273, 507
EciI	GGCGGA	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	473
Eco57I	CTGAAG	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	267
Esp3I	CGTCTC	1 cut(s)	140
FaeI	CATG	3 cut(s)	223, 303, 485
FaiI	YATR	4 cut(s)	185, 221, 301, 483
FatI	CATG	3 cut(s)	219, 299, 481
Fnu4HI	GCNGC	7 cut(s)	91, 166, 224, 238, 241, 304, 372
Fsp4HI	GCNGC	7 cut(s)	91, 166, 224, 238, 241, 304, 372
FspBI	CTAG	2 cut(s)	344, 453
GlaI	GCGC	2 cut(s)	81, 322
GluI	GCNGC	7 cut(s)	91, 166, 224, 238, 241, 304, 372
HaeII	RGCGCY	1 cut(s)	324
HaeIII	GGCC	4 cut(s)	230, 275, 443, 509
HapII	CCGG	4 cut(s)	200, 420, 444, 471
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	2 cut(s)	82, 323
Hin1I	GRCGYC	1 cut(s)	149
Hin1II	CATG	3 cut(s)	223, 303, 485
Hin6I	GCGC	2 cut(s)	80, 321
HinP1I	GCGC	2 cut(s)	80, 321
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	2 cut(s)	170, 449
HpaII	CCGG	4 cut(s)	200, 420, 444, 471
HphI	GGTGA	3 cut(s)	61, 187, 354
Hpy188I	TCNGA	2 cut(s)	105, 492
Hpy188III	TCNNGA	1 cut(s)	253
Hpy99I	CGWCG	2 cut(s)	157, 248
HpyAV	CCTTC	6 cut(s)	100, 133, 151, 172, 417, 433
HpyCH4III	ACNGT	2 cut(s)	76, 332
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	5 cut(s)	90, 223, 299, 303, 413
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 398
HpyF3I	CTNAG	2 cut(s)	122, 336
HpySE526I	ACGT	1 cut(s)	216
Hsp92I	GRCGYC	1 cut(s)	149
Hsp92II	CATG	3 cut(s)	223, 303, 485
HspAI	GCGC	2 cut(s)	80, 321
KroI	GCCGGC	1 cut(s)	443
KroNI	GCCGGC	1 cut(s)	445
Kzo9I	GATC	4 cut(s)	36, 249, 264, 539
LmnI	GCTCC	1 cut(s)	294
Lsp1109I	GCAGC	6 cut(s)	102, 152, 235, 252, 315, 358
MaeI	CTAG	2 cut(s)	344, 453
MaeII	ACGT	1 cut(s)	216
MalI	GATC	4 cut(s)	38, 251, 266, 541
MboI	GATC	4 cut(s)	36, 249, 264, 539
MboII	GAAGA	4 cut(s)	19, 22, 268, 370
MflI	RGATCY	1 cut(s)	264
MlsI	TGGCCA	2 cut(s)	275, 509
MluCI	AATT	1 cut(s)	459
MluNI	TGGCCA	2 cut(s)	275, 509
MlyI	GAGTC	2 cut(s)	179, 443
MmeI	TCCRAC	1 cut(s)	517
MnlI	CCTC	3 cut(s)	45, 49, 361
Mox20I	TGGCCA	2 cut(s)	275, 509
MroNI	GCCGGC	1 cut(s)	443
MscI	TGGCCA	2 cut(s)	275, 509
MseI	TTAA	2 cut(s)	308, 562
Msp20I	TGGCCA	2 cut(s)	275, 509
MspA1I	CMGCKG	1 cut(s)	237
MspI	CCGG	4 cut(s)	200, 420, 444, 471
MspR9I	CCNGG	2 cut(s)	269, 471
Mva1269I	GAATGC	1 cut(s)	348
MvaI	CCWGG	1 cut(s)	269
MwoI	GCNNNNNNNGC	2 cut(s)	77, 398
NaeI	GCCGGC	1 cut(s)	445
NciI	CCSGG	1 cut(s)	471
NdeII	GATC	4 cut(s)	36, 249, 264, 539
NgoMIV	GCCGGC	1 cut(s)	443
NlaIII	CATG	3 cut(s)	223, 303, 485
NlaIV	GGNNCC	2 cut(s)	266, 475
NspI	RCATGY	1 cut(s)	303
PaeI	GCATGC	1 cut(s)	303
PaqCI	CACCTGC	1 cut(s)	424
PctI	GAATGC	1 cut(s)	348
PdiI	GCCGGC	1 cut(s)	445
PkrI	GCNGC	7 cut(s)	92, 167, 225, 239, 242, 305, 373
PleI	GAGTC	2 cut(s)	178, 443
PpsI	GAGTC	2 cut(s)	178, 443
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	2 cut(s)	266, 475
PspPI	GGNCC	1 cut(s)	473
PstNI	CAGNNNCTG	2 cut(s)	330, 371
PsuI	RGATCY	1 cut(s)	264
SaqAI	TTAA	2 cut(s)	308, 562
SatI	GCNGC	7 cut(s)	91, 166, 224, 238, 241, 304, 372
Sau3AI	GATC	4 cut(s)	36, 249, 264, 539
Sau96I	GGNCC	1 cut(s)	473
SchI	GAGTC	2 cut(s)	179, 443
ScrFI	CCNGG	2 cut(s)	269, 471
SetI	ASST	8 cut(s)	111, 128, 219, 273, 291, 308, 342, 418
SinI	GGWCC	1 cut(s)	473
SphI	GCATGC	1 cut(s)	303
Sse9I	AATT	1 cut(s)	459
SsiI	CCGC	4 cut(s)	65, 113, 143, 237
SspMI	CTAG	2 cut(s)	344, 453
StyD4I	CCNGG	2 cut(s)	267, 469
TaaI	ACNGT	2 cut(s)	76, 332
TaiI	ACGT	1 cut(s)	219
TasI	AATT	1 cut(s)	459
TauI	GCSGC	1 cut(s)	240
Tru1I	TTAA	2 cut(s)	308, 562
Tru9I	TTAA	2 cut(s)	308, 562
TscAI	CASTG	1 cut(s)	301
TseI	GCWGC	6 cut(s)	90, 165, 223, 240, 303, 371
TspDTI	ATGAA	1 cut(s)	20
TspRI	CASTG	1 cut(s)	301
VpaK11BI	GGWCC	1 cut(s)	473
XceI	RCATGY	1 cut(s)	303
XspI	CTAG	2 cut(s)	344, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.