Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015442

Physical Location & Seq

Genomic Coordinates Reverse (-)

54752382 .. 54754401

Gene Structure 2020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39890

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGAGAAAATGTTGATGGGTATGGCCGTGTTGGCGATGTTAGTGTGCGGTTCGGCCGGTGCGGCGGAGACTGTGGCGGACAAGTGCAACGACAAGTTCCAGAAGGTGGCGGTGTGTCTGACCTACGCGACGGGGAAAGCGGCGACGCCGACCAAGGAGTGCTGTGAGTCGGTGAAGGGGATCAAGGAGAGCGAGCCGGAGTGCTTGTGCTATGTGATTGAACAAGCCAATAGTGGGAGCGAGGAGATCAAGAAGATGGGGATTCAGGTGGCTAAGTTGCTTGAGCTCCCTTCTGCATGCAACTTGAAGAACGCCAGCGCCAGCAACTGTCCCTCGTTACTAGGGCTGGCTCCCAACTCACCAGAAGCTGCCATCTTCACAAATGCTACCACATCGACAACAACAACTCCTGCAGCTGCAACTTCCGGACAATCTGCGCCTGAAACGGCCTCTGCATCCGGTGGAGTGACTAAGCTCGGACCTGGTTATGCCGGTCTGGTGGTGGCCGTGTCCATCGTCTTCCTTGCATTCTGGCCGGGTGCTGGATCTGTGCGCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006810 GO:0006869 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008289 GO:0009505 GO:0009605 GO:0009607 GO:0009620 GO:0010876 GO:0012505 GO:0016020 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0033036 GO:0042335 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048856 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0071702 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

186

Amino Acids

18.86

Weight (kDa)

5.55

Isoelectric Point (pI)

42.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	16 - 110	6.7e-14	Probable lipid transfer
Tryp_alpha_amyl	PF00234	29 - 110	1.4e-10	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27950
fragaria_vesca	FvH4_4g23670
malus_domestica	MD16G1120100.v1.1
prunus_persica	Prupe.1G225100_v2.0.a1
pyrus_communis	pycom13g10450 pycom16g10260
rosa_chinensis	RchiOBHm_Chr4g0430161
rosa_laevigata	RLG00000007000
rosa_multiflora	Rmu_sc0004036.1_g000011
rosa_roxburghii	Rroxscaffold_5G00371950
rosa_rugosa	Rorug04G0240900
rosa_samantha	Rh4AG297700 Rh4BG304100 Rh4CG319600 Rh4DG301500
rosa_wichuraiana	Rw4G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	106
AccII	CGCG	1 cut(s)	128
AccIII	TCCGGA	1 cut(s)	425
AciI	CCGC	6 cut(s)	48, 62, 65, 77, 110, 140
AclWI	GGATC	2 cut(s)	188, 553
AcoI	YGGCCR	4 cut(s)	24, 54, 504, 533
AcyI	GRCGYC	1 cut(s)	146
AfiI	CCNNNNNNNGG	3 cut(s)	106, 234, 542
AgsI	TTSAA	2 cut(s)	221, 307
AjnI	CCWGG	1 cut(s)	481
AluBI	AGCT	4 cut(s)	286, 368, 416, 475
AluI	AGCT	4 cut(s)	286, 368, 416, 475
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	2 cut(s)	188, 553
AlwNI	CAGNNNCTG	2 cut(s)	327, 368
Aor13HI	TCCGGA	1 cut(s)	425
AoxI	GGCC	5 cut(s)	24, 54, 447, 504, 533
ApeKI	GCWGC	3 cut(s)	368, 413, 416
AspLEI	GCGC	3 cut(s)	320, 439, 555
AspS9I	GGNCC	1 cut(s)	479
AsuC2I	CCSGG	1 cut(s)	537
AsuHPI	GGTGA	2 cut(s)	184, 351
AvaII	GGWCC	1 cut(s)	479
BanII	GRGCYC	1 cut(s)	288
BbsI	GAAGAC	1 cut(s)	511
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	3 cut(s)	355, 403, 425
BccI	CCATC	4 cut(s)	10, 250, 380, 521
BceAI	ACGGC	3 cut(s)	11, 462, 491
BciT130I	CCWGG	1 cut(s)	483
BcnI	CCSGG	1 cut(s)	537
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	1 cut(s)	341
BfmI	CTRYAG	1 cut(s)	411
BfoI	RGCGCY	1 cut(s)	321
BglI	GCCNNNNNGGC	2 cut(s)	32, 62
BisI	GCNGC	5 cut(s)	63, 141, 369, 414, 417
BlsI	GCNGC	5 cut(s)	64, 142, 370, 415, 418
Bme1390I	CCNGG	2 cut(s)	483, 537
Bme18I	GGWCC	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	2 cut(s)	483, 537
BmsI	GCATC	1 cut(s)	464
BpiI	GAAGAC	1 cut(s)	511
BpuEI	CTTGAG	1 cut(s)	302
BpuMI	CCSGG	1 cut(s)	537
BsaHI	GRCGYC	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	153
BsaWI	WCCGGW	2 cut(s)	425, 458
BsaXI	ACNNNNNCTCC	5 cut(s)	26, 191, 221, 391, 421
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 234, 542
Bse118I	RCCGGY	2 cut(s)	56, 491
BseAI	TCCGGA	1 cut(s)	425
BseBI	CCWGG	1 cut(s)	483
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	1 cut(s)	455
BseLI	CCNNNNNNNGG	3 cut(s)	106, 234, 542
BseRI	GAGGAG	1 cut(s)	257
BseX3I	CGGCCG	1 cut(s)	54
BseXI	GCAGC	3 cut(s)	355, 403, 425
Bsh1236I	CGCG	1 cut(s)	128
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	5 cut(s)	26, 56, 449, 506, 535
BsiEI	CGRYCG	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	6 cut(s)	57, 197, 426, 459, 492, 536
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	3 cut(s)	106, 234, 542
BsmAI	GTCTC	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	315
BsmI	GAATGC	1 cut(s)	527
BsnI	GGCC	5 cut(s)	26, 56, 449, 506, 535
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp13I	TCCGGA	1 cut(s)	425
Bsp143I	GATC	3 cut(s)	180, 246, 545
BspACI	CCGC	6 cut(s)	48, 62, 65, 77, 110, 140
BspANI	GGCC	5 cut(s)	26, 56, 449, 506, 535
BspEI	TCCGGA	1 cut(s)	425
BspFNI	CGCG	1 cut(s)	128
BspLI	GGNNCC	1 cut(s)	351
BspMAI	CTGCAG	1 cut(s)	415
BspPI	GGATC	2 cut(s)	188, 553
BsrFI	RCCGGY	2 cut(s)	56, 491
BssAI	RCCGGY	2 cut(s)	56, 491
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	3 cut(s)	180, 246, 545
BssNI	GRCGYC	1 cut(s)	146
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	483
Bst4CI	ACNGT	2 cut(s)	73, 329
BstACI	GRCGYC	1 cut(s)	146
BstC8I	GCNNGC	5 cut(s)	194, 298, 316, 322, 348
BstDEI	CTNAG	2 cut(s)	273, 471
BstF5I	GGATG	1 cut(s)	455
BstFNI	CGCG	1 cut(s)	128
BstH2I	RGCGCY	1 cut(s)	321
BstHHI	GCGC	3 cut(s)	320, 439, 555
BstKTI	GATC	3 cut(s)	183, 249, 548
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	3 cut(s)	180, 246, 545
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 62
BstNI	CCWGG	1 cut(s)	483
BstNSI	RCATGY	1 cut(s)	300
BstSCI	CCNGG	2 cut(s)	481, 535
BstSFI	CTRYAG	1 cut(s)	411
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	3 cut(s)	355, 403, 425
BstV2I	GAAGAC	1 cut(s)	511
BstX2I	RGATCY	1 cut(s)	545
BstYI	RGATCY	1 cut(s)	545
BstZI	CGGCCG	1 cut(s)	54
BsuRI	GGCC	5 cut(s)	26, 56, 449, 506, 535
BtgZI	GCGATG	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	455
Cac8I	GCNNGC	5 cut(s)	194, 298, 316, 322, 348
CaiI	CAGNNNCTG	2 cut(s)	327, 368
CfoI	GCGC	3 cut(s)	320, 439, 555
Cfr10I	RCCGGY	2 cut(s)	56, 491
Cfr13I	GGNCC	1 cut(s)	479
CseI	GACGC	1 cut(s)	154
CsiI	ACCWGGT	1 cut(s)	481
CviAII	CATG	1 cut(s)	297
DdeI	CTNAG	2 cut(s)	273, 471
DpnI	GATC	3 cut(s)	182, 248, 547
DpnII	GATC	3 cut(s)	180, 246, 545
EaeI	YGGCCR	4 cut(s)	24, 54, 504, 533
EagI	CGGCCG	1 cut(s)	54
EciI	GGCGGA	2 cut(s)	80, 92
Ecl136II	GAGCTC	1 cut(s)	286
EclXI	CGGCCG	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	479
Eco52I	CGGCCG	1 cut(s)	54
Eco53kI	GAGCTC	1 cut(s)	286
EcoICRI	GAGCTC	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	153
EcoT38I	GRGCYC	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	1 cut(s)	300
FaiI	YATR	4 cut(s)	23, 213, 298, 489
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	1 cut(s)	296
Fnu4HI	GCNGC	5 cut(s)	63, 141, 369, 414, 417
FokI	GGATG	1 cut(s)	442
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	5 cut(s)	63, 141, 369, 414, 417
FspBI	CTAG	1 cut(s)	341
GlaI	GCGC	3 cut(s)	319, 438, 554
GluI	GCNGC	5 cut(s)	63, 141, 369, 414, 417
HaeII	RGCGCY	1 cut(s)	321
HaeIII	GGCC	5 cut(s)	26, 56, 449, 506, 535
HapII	CCGG	6 cut(s)	57, 197, 426, 459, 492, 536
HgaI	GACGC	1 cut(s)	154
HhaI	GCGC	3 cut(s)	320, 439, 555
Hin1I	GRCGYC	1 cut(s)	146
Hin1II	CATG	1 cut(s)	300
Hin6I	GCGC	3 cut(s)	318, 437, 553
HinP1I	GCGC	3 cut(s)	318, 437, 553
HinfI	GANTC	2 cut(s)	167, 262
HpaII	CCGG	6 cut(s)	57, 197, 426, 459, 492, 536
HphI	GGTGA	2 cut(s)	184, 351
Hpy188I	TCNGA	3 cut(s)	120, 479, 560
Hpy188III	TCNNGA	3 cut(s)	100, 250, 426
Hpy99I	CGWCG	2 cut(s)	133, 148
HpyAV	CCTTC	3 cut(s)	97, 169, 300
HpyCH4III	ACNGT	2 cut(s)	73, 329
HpyCH4V	TGCA	7 cut(s)	87, 296, 300, 413, 419, 455, 527
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 62
HpyF3I	CTNAG	2 cut(s)	273, 471
Hsp92I	GRCGYC	1 cut(s)	146
Hsp92II	CATG	1 cut(s)	300
HspAI	GCGC	3 cut(s)	318, 437, 553
Kpn2I	TCCGGA	1 cut(s)	425
Kzo9I	GATC	3 cut(s)	180, 246, 545
LmnI	GCTCC	3 cut(s)	237, 291, 355
Lsp1109I	GCAGC	3 cut(s)	355, 403, 425
LweI	GCATC	1 cut(s)	464
MabI	ACCWGGT	1 cut(s)	481
MaeI	CTAG	1 cut(s)	341
MaeIII	GTNAC	2 cut(s)	336, 466
MalI	GATC	3 cut(s)	182, 248, 547
MboI	GATC	3 cut(s)	180, 246, 545
MboII	GAAGA	4 cut(s)	265, 319, 367, 511
MflI	RGATCY	1 cut(s)	545
MhlI	GDGCHC	1 cut(s)	288
MlyI	GAGTC	1 cut(s)	176
MnlI	CCTC	3 cut(s)	235, 343, 460
MroI	TCCGGA	1 cut(s)	425
MspA1I	CMGCKG	1 cut(s)	416
MspI	CCGG	6 cut(s)	57, 197, 426, 459, 492, 536
MspR9I	CCNGG	2 cut(s)	483, 537
Mva1269I	GAATGC	1 cut(s)	527
MvaI	CCWGG	1 cut(s)	483
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	32, 62
NciI	CCSGG	1 cut(s)	537
NdeII	GATC	3 cut(s)	180, 246, 545
NlaIII	CATG	1 cut(s)	300
NlaIV	GGNNCC	1 cut(s)	351
NmuCI	GTSAC	1 cut(s)	466
NspI	RCATGY	1 cut(s)	300
PaeI	GCATGC	1 cut(s)	300
PctI	GAATGC	1 cut(s)	527
PfeI	GAWTC	1 cut(s)	262
PflMI	CCANNNNNTGG	1 cut(s)	106
PkrI	GCNGC	5 cut(s)	64, 142, 370, 415, 418
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
Psp124BI	GAGCTC	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	481
PspGI	CCWGG	1 cut(s)	481
PspN4I	GGNNCC	1 cut(s)	351
PspPI	GGNCC	1 cut(s)	479
PstI	CTGCAG	1 cut(s)	415
PstNI	CAGNNNCTG	2 cut(s)	327, 368
PsuI	RGATCY	1 cut(s)	545
PvuII	CAGCTG	1 cut(s)	416
SacI	GAGCTC	1 cut(s)	288
SatI	GCNGC	5 cut(s)	63, 141, 369, 414, 417
Sau3AI	GATC	3 cut(s)	180, 246, 545
Sau96I	GGNCC	1 cut(s)	479
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	2 cut(s)	483, 537
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	8 cut(s)	108, 125, 270, 288, 370, 418, 477, 484
SexAI	ACCWGGT	1 cut(s)	481
SfaNI	GCATC	1 cut(s)	464
SfcI	CTRYAG	1 cut(s)	411
SinI	GGWCC	1 cut(s)	479
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
SphI	GCATGC	1 cut(s)	300
SsiI	CCGC	6 cut(s)	48, 62, 65, 77, 110, 140
SspMI	CTAG	1 cut(s)	341
SstI	GAGCTC	1 cut(s)	288
StyD4I	CCNGG	2 cut(s)	481, 535
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	2 cut(s)	73, 329
TaqI	TCGA	1 cut(s)	395
TauI	GCSGC	2 cut(s)	65, 143
TfiI	GAWTC	1 cut(s)	262
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	3 cut(s)	368, 413, 416
Tsp45I	GTSAC	1 cut(s)	466
Van91I	CCANNNNNTGG	1 cut(s)	106
VpaK11BI	GGWCC	1 cut(s)	479
XceI	RCATGY	1 cut(s)	300
XspI	CTAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.