Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004036.1

Orthogroup ID

OG0015442

Physical Location & Seq

Genomic Coordinates Forward (+)

43562 .. 44923

Gene Structure 1362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004036.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atgttgatgggtctggccgtgttggcgatgttagtgtggggctcggccggtgcggcggagactgtggcggacaagtgcaacgacaagttccagaaggtggcggtgtgtctgacctacgcgacggggaaagcggcgacgccgaccaaggagtgctgtgagtcggtgaaggggatcaaggagagcgagccggagtgcttgtgctatgtgattgaacaagccaacagtgggagcgaggagatcaagaagatggggattcaggtggctaagttgcttgagctcccttctgcatgcaacttgaagaacgccagtgccagcaactgtcctgcgttactagacctggctcccaactcaccagaagctgctatcttcacaaatgctactacaccaacaacaacaactcctgcagctgcaacttccggacaatctgcgcctgaaacggcctctgcatccggtggagtgactaagctcggacctggttatgccggtctggtggtggccgtggctgtgtccatcgtcttccttgcattcccgccggcttctggatctgtgcgcctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006810 GO:0006869 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008289 GO:0009505 GO:0009605 GO:0009607 GO:0009620 GO:0010876 GO:0012505 GO:0016020 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0033036 GO:0042335 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048856 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0071702 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

185

Amino Acids

18.7

Weight (kDa)

5.2

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27950
fragaria_vesca	FvH4_4g23670
malus_domestica	MD16G1120100.v1.1
prunus_persica	Prupe.1G225100_v2.0.a1
pyrus_communis	pycom13g10450 pycom16g10260
rosa_chinensis	RchiOBHm_Chr4g0430161
rosa_laevigata	RLG00000007000
rosa_multiflora	Rmu_sc0004036.1_g000011
rosa_roxburghii	Rroxscaffold_5G00371950
rosa_rugosa	Rorug04G0240900
rosa_samantha	Rh4AG297700 Rh4BG304100 Rh4CG319600 Rh4DG301500
rosa_wichuraiana	Rw4G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	97
AccII	CGCG	1 cut(s)	119
AccIII	TCCGGA	1 cut(s)	416
AciI	CCGC	6 cut(s)	53, 56, 68, 101, 131, 530
AclWI	GGATC	2 cut(s)	179, 550
AcoI	YGGCCR	3 cut(s)	15, 45, 495
AcyI	GRCGYC	1 cut(s)	137
AfiI	CCNNNNNNNGG	3 cut(s)	97, 225, 539
AgsI	TTSAA	2 cut(s)	212, 298
AjnI	CCWGG	2 cut(s)	336, 472
AluBI	AGCT	4 cut(s)	277, 359, 407, 466
AluI	AGCT	4 cut(s)	277, 359, 407, 466
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	1 cut(s)	53
AlwI	GGATC	2 cut(s)	179, 550
AlwNI	CAGNNNCTG	2 cut(s)	318, 359
Aor13HI	TCCGGA	1 cut(s)	416
AoxI	GGCC	4 cut(s)	15, 45, 438, 495
ApeKI	GCWGC	3 cut(s)	359, 404, 407
AspLEI	GCGC	2 cut(s)	430, 552
AspS9I	GGNCC	1 cut(s)	470
AsuHPI	GGTGA	2 cut(s)	175, 342
AvaII	GGWCC	1 cut(s)	470
BanII	GRGCYC	2 cut(s)	44, 279
BbsI	GAAGAC	1 cut(s)	508
Bbv12I	GWGCWC	1 cut(s)	279
BbvI	GCAGC	3 cut(s)	346, 394, 416
BccI	CCATC	2 cut(s)	241, 518
BceAI	ACGGC	3 cut(s)	2, 453, 482
BciT130I	CCWGG	2 cut(s)	338, 474
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	1 cut(s)	332
BfmI	CTRYAG	1 cut(s)	402
BglI	GCCNNNNNGGC	2 cut(s)	23, 53
BisI	GCNGC	5 cut(s)	54, 132, 360, 405, 408
BlsI	GCNGC	5 cut(s)	55, 133, 361, 406, 409
Bme1390I	CCNGG	2 cut(s)	338, 474
Bme18I	GGWCC	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	470
BmiI	GGNNCC	1 cut(s)	342
BmrFI	CCNGG	2 cut(s)	338, 474
BmsI	GCATC	1 cut(s)	455
BpiI	GAAGAC	1 cut(s)	508
BpuEI	CTTGAG	1 cut(s)	293
BsaHI	GRCGYC	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	144, 498
BsaWI	WCCGGW	2 cut(s)	416, 449
BsaXI	ACNNNNNCTCC	4 cut(s)	182, 212, 382, 412
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 225, 539
Bse118I	RCCGGY	3 cut(s)	47, 482, 532
Bse1I	ACTGG	1 cut(s)	306
BseAI	TCCGGA	1 cut(s)	416
BseBI	CCWGG	2 cut(s)	338, 474
BseDI	CCNNGG	2 cut(s)	144, 498
BseGI	GGATG	1 cut(s)	446
BseLI	CCNNNNNNNGG	3 cut(s)	97, 225, 539
BseNI	ACTGG	1 cut(s)	306
BseRI	GAGGAG	1 cut(s)	248
BseX3I	CGGCCG	1 cut(s)	45
BseXI	GCAGC	3 cut(s)	346, 394, 416
Bsh1236I	CGCG	1 cut(s)	119
Bsh1285I	CGRYCG	1 cut(s)	48
BshFI	GGCC	4 cut(s)	17, 47, 440, 497
BsiEI	CGRYCG	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	279
BsiSI	CCGG	6 cut(s)	48, 188, 417, 450, 483, 533
BslI	CCNNNNNNNGG	3 cut(s)	97, 225, 539
BsmAI	GTCTC	1 cut(s)	53
BsmI	GAATGC	1 cut(s)	524
BsnI	GGCC	4 cut(s)	17, 47, 440, 497
Bsp1286I	GDGCHC	2 cut(s)	44, 279
Bsp13I	TCCGGA	1 cut(s)	416
Bsp143I	GATC	3 cut(s)	171, 237, 542
BspACI	CCGC	6 cut(s)	53, 56, 68, 101, 131, 530
BspANI	GGCC	4 cut(s)	17, 47, 440, 497
BspEI	TCCGGA	1 cut(s)	416
BspFNI	CGCG	1 cut(s)	119
BspLI	GGNNCC	1 cut(s)	342
BspMAI	CTGCAG	1 cut(s)	406
BspPI	GGATC	2 cut(s)	179, 550
BsrFI	RCCGGY	3 cut(s)	47, 482, 532
BsrI	ACTGG	1 cut(s)	306
BssAI	RCCGGY	3 cut(s)	47, 482, 532
BssECI	CCNNGG	2 cut(s)	144, 498
BssMI	GATC	3 cut(s)	171, 237, 542
BssNI	GRCGYC	1 cut(s)	137
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	2 cut(s)	338, 474
Bst4CI	ACNGT	3 cut(s)	64, 224, 320
BstACI	GRCGYC	1 cut(s)	137
BstC8I	GCNNGC	4 cut(s)	185, 289, 313, 534
BstDEI	CTNAG	2 cut(s)	264, 462
BstDSI	CCRYGG	1 cut(s)	498
BstF5I	GGATG	1 cut(s)	446
BstFNI	CGCG	1 cut(s)	119
BstHHI	GCGC	2 cut(s)	430, 552
BstKTI	GATC	3 cut(s)	174, 240, 545
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	3 cut(s)	171, 237, 542
BstMCI	CGRYCG	1 cut(s)	48
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 53
BstNI	CCWGG	2 cut(s)	338, 474
BstNSI	RCATGY	1 cut(s)	291
BstSCI	CCNGG	2 cut(s)	336, 472
BstSFI	CTRYAG	1 cut(s)	402
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	3 cut(s)	346, 394, 416
BstV2I	GAAGAC	1 cut(s)	508
BstX2I	RGATCY	1 cut(s)	542
BstYI	RGATCY	1 cut(s)	542
BstZI	CGGCCG	1 cut(s)	45
BsuRI	GGCC	4 cut(s)	17, 47, 440, 497
BtgI	CCRYGG	1 cut(s)	498
BtgZI	GCGATG	1 cut(s)	41
BtsCI	GGATG	1 cut(s)	446
BtsIMutI	CAGTG	2 cut(s)	229, 313
Cac8I	GCNNGC	4 cut(s)	185, 289, 313, 534
CaiI	CAGNNNCTG	2 cut(s)	318, 359
CfoI	GCGC	2 cut(s)	430, 552
Cfr10I	RCCGGY	3 cut(s)	47, 482, 532
Cfr13I	GGNCC	1 cut(s)	470
CseI	GACGC	1 cut(s)	145
CsiI	ACCWGGT	1 cut(s)	472
CviAII	CATG	1 cut(s)	288
DdeI	CTNAG	2 cut(s)	264, 462
DpnI	GATC	3 cut(s)	173, 239, 544
DpnII	GATC	3 cut(s)	171, 237, 542
EaeI	YGGCCR	3 cut(s)	15, 45, 495
EagI	CGGCCG	1 cut(s)	45
EciI	GGCGGA	2 cut(s)	71, 83
Ecl136II	GAGCTC	1 cut(s)	277
EclXI	CGGCCG	1 cut(s)	45
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	2 cut(s)	44, 279
Eco47I	GGWCC	1 cut(s)	470
Eco52I	CGGCCG	1 cut(s)	45
Eco53kI	GAGCTC	1 cut(s)	277
EcoICRI	GAGCTC	1 cut(s)	277
EcoRII	CCWGG	2 cut(s)	336, 472
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	2 cut(s)	44, 279
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	1 cut(s)	291
FaiI	YATR	3 cut(s)	204, 289, 480
FatI	CATG	1 cut(s)	287
FauI	CCCGC	1 cut(s)	537
Fnu4HI	GCNGC	5 cut(s)	54, 132, 360, 405, 408
FokI	GGATG	1 cut(s)	433
FriOI	GRGCYC	2 cut(s)	44, 279
Fsp4HI	GCNGC	5 cut(s)	54, 132, 360, 405, 408
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	2 cut(s)	429, 551
GluI	GCNGC	5 cut(s)	54, 132, 360, 405, 408
HaeIII	GGCC	4 cut(s)	17, 47, 440, 497
HapII	CCGG	6 cut(s)	48, 188, 417, 450, 483, 533
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	2 cut(s)	430, 552
Hin1I	GRCGYC	1 cut(s)	137
Hin1II	CATG	1 cut(s)	291
Hin6I	GCGC	2 cut(s)	428, 550
HinP1I	GCGC	2 cut(s)	428, 550
HinfI	GANTC	2 cut(s)	158, 253
HpaII	CCGG	6 cut(s)	48, 188, 417, 450, 483, 533
HphI	GGTGA	2 cut(s)	175, 342
Hpy188I	TCNGA	3 cut(s)	111, 470, 557
Hpy188III	TCNNGA	4 cut(s)	91, 241, 417, 540
Hpy99I	CGWCG	2 cut(s)	124, 139
HpyAV	CCTTC	3 cut(s)	88, 160, 291
HpyCH4III	ACNGT	3 cut(s)	64, 224, 320
HpyCH4V	TGCA	7 cut(s)	78, 287, 291, 404, 410, 446, 524
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 53
HpyF3I	CTNAG	2 cut(s)	264, 462
Hsp92I	GRCGYC	1 cut(s)	137
Hsp92II	CATG	1 cut(s)	291
HspAI	GCGC	2 cut(s)	428, 550
Kpn2I	TCCGGA	1 cut(s)	416
KroI	GCCGGC	1 cut(s)	532
KroNI	GCCGGC	1 cut(s)	534
Kzo9I	GATC	3 cut(s)	171, 237, 542
LmnI	GCTCC	3 cut(s)	228, 282, 346
Lsp1109I	GCAGC	3 cut(s)	346, 394, 416
LweI	GCATC	1 cut(s)	455
MabI	ACCWGGT	1 cut(s)	472
MaeI	CTAG	1 cut(s)	332
MaeIII	GTNAC	2 cut(s)	327, 457
MalI	GATC	3 cut(s)	173, 239, 544
MboI	GATC	3 cut(s)	171, 237, 542
MboII	GAAGA	4 cut(s)	256, 310, 358, 508
MflI	RGATCY	1 cut(s)	542
MhlI	GDGCHC	2 cut(s)	44, 279
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	2 cut(s)	226, 451
MroI	TCCGGA	1 cut(s)	416
MroNI	GCCGGC	1 cut(s)	532
MspA1I	CMGCKG	1 cut(s)	407
MspI	CCGG	6 cut(s)	48, 188, 417, 450, 483, 533
MspR9I	CCNGG	2 cut(s)	338, 474
Mva1269I	GAATGC	1 cut(s)	524
MvaI	CCWGG	2 cut(s)	338, 474
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	2 cut(s)	23, 53
NaeI	GCCGGC	1 cut(s)	534
NdeII	GATC	3 cut(s)	171, 237, 542
NgoMIV	GCCGGC	1 cut(s)	532
NlaIII	CATG	1 cut(s)	291
NlaIV	GGNNCC	1 cut(s)	342
NmeAIII	GCCGAG	1 cut(s)	23
NmuCI	GTSAC	1 cut(s)	457
NspI	RCATGY	1 cut(s)	291
PaeI	GCATGC	1 cut(s)	291
PctI	GAATGC	1 cut(s)	524
PdiI	GCCGGC	1 cut(s)	534
PfeI	GAWTC	1 cut(s)	253
PflMI	CCANNNNNTGG	1 cut(s)	97
PkrI	GCNGC	5 cut(s)	55, 133, 361, 406, 409
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Psp124BI	GAGCTC	1 cut(s)	279
Psp6I	CCWGG	2 cut(s)	336, 472
PspGI	CCWGG	2 cut(s)	336, 472
PspN4I	GGNNCC	1 cut(s)	342
PspPI	GGNCC	1 cut(s)	470
PstI	CTGCAG	1 cut(s)	406
PstNI	CAGNNNCTG	2 cut(s)	318, 359
PsuI	RGATCY	1 cut(s)	542
PvuII	CAGCTG	1 cut(s)	407
SacI	GAGCTC	1 cut(s)	279
SatI	GCNGC	5 cut(s)	54, 132, 360, 405, 408
Sau3AI	GATC	3 cut(s)	171, 237, 542
Sau96I	GGNCC	1 cut(s)	470
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	2 cut(s)	338, 474
SduI	GDGCHC	2 cut(s)	44, 279
SetI	ASST	9 cut(s)	99, 116, 261, 279, 339, 361, 409, 468, 475
SexAI	ACCWGGT	1 cut(s)	472
SfaNI	GCATC	1 cut(s)	455
SfcI	CTRYAG	1 cut(s)	402
SinI	GGWCC	1 cut(s)	470
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
SphI	GCATGC	1 cut(s)	291
SsiI	CCGC	6 cut(s)	53, 56, 68, 101, 131, 530
SspMI	CTAG	1 cut(s)	332
SstI	GAGCTC	1 cut(s)	279
StyD4I	CCNGG	2 cut(s)	336, 472
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	3 cut(s)	64, 224, 320
TauI	GCSGC	2 cut(s)	56, 134
TfiI	GAWTC	1 cut(s)	253
TscAI	CASTG	2 cut(s)	229, 313
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	3 cut(s)	359, 404, 407
Tsp45I	GTSAC	1 cut(s)	457
TspRI	CASTG	2 cut(s)	229, 313
Van91I	CCANNNNNTGG	1 cut(s)	97
VpaK11BI	GGWCC	1 cut(s)	470
XceI	RCATGY	1 cut(s)	291
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.