Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0015442

Physical Location & Seq

Genomic Coordinates Forward (+)

8609510 .. 8613866

Gene Structure 4357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1120100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGACGAGGAAAATGATTGCGGTGTTGTTCTCCGTTTTCGTCGCCTGCGCTTCTGTTGGCGACGTCAGAGCGGCAGCGCCAACGGTGGCGGAGAAGTGCAGCGACAAGTTCCAGAAGGTGGCGGTGTGCTTGAGCTACGCGACAGGGAAGGCGGAGACGCCCACGAAGGAGTGCTGTGATTCGGTGAAGGGGATAAGGGATACTCAGCCGGAGTGCCTGTGTTACGTCATGCAGCAGGCGAACAGCGGGAGCGAGGAGATTAAGAAGATGGGGGTTCAGGTGGCCAAGTTGCTTAAGCTCCCCACTGCATGCAGCTTGAAAAACGCCACTGCCTCCGATTGCCCTAAGCTTTTAGGCATACCTGCGGGCTCACCTGAGGCTGCTGTCTTCACCAATAATGCATCATCAACAGCAACTCCCACTACTGGATCCGGCGGACAACAATCGGCACCGGAAAAGGCCGACAATTCCAACGGAGTTATAAAGCTTGGACCCCAGCATGCTGGTCTGAAGGCAATGGCTGTGGCCATCGTTTTCTTTGCATTCCCTGCTCTCTATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006810 GO:0006869 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008289 GO:0009505 GO:0009605 GO:0009607 GO:0009620 GO:0010876 GO:0012505 GO:0016020 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0033036 GO:0042335 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048856 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0071702 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

188

Amino Acids

19.35

Weight (kDa)

8.72

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	16 - 114	4.2e-13	Probable lipid transfer
Tryp_alpha_amyl	PF00234	33 - 114	9.9e-10	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27950
fragaria_vesca	FvH4_4g23670
malus_domestica	MD16G1120100.v1.1
prunus_persica	Prupe.1G225100_v2.0.a1
pyrus_communis	pycom13g10450 pycom16g10260
rosa_chinensis	RchiOBHm_Chr4g0430161
rosa_laevigata	RLG00000007000
rosa_multiflora	Rmu_sc0004036.1_g000011
rosa_roxburghii	Rroxscaffold_5G00371950
rosa_rugosa	Rorug04G0240900
rosa_samantha	Rh4AG297700 Rh4BG304100 Rh4CG319600 Rh4DG301500
rosa_wichuraiana	Rw4G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	482
AatII	GACGTC	1 cut(s)	66
Acc36I	ACCTGC	1 cut(s)	370
AccB1I	GGYRCC	1 cut(s)	448
AccB7I	CCANNNNNTGG	1 cut(s)	118
AccBSI	CCGCTC	1 cut(s)	71
AccII	CGCG	1 cut(s)	140
AciI	CCGC	8 cut(s)	20, 71, 89, 122, 152, 246, 365, 435
AclWI	GGATC	2 cut(s)	423, 436
AcoI	YGGCCR	2 cut(s)	282, 525
AcuI	CTGAAG	1 cut(s)	530
AcyI	GRCGYC	2 cut(s)	63, 158
AfiI	CCNNNNNNNGG	2 cut(s)	118, 425
AflII	CTTAAG	1 cut(s)	293
AgsI	TTSAA	1 cut(s)	319
AluBI	AGCT	5 cut(s)	135, 298, 315, 349, 487
AluI	AGCT	5 cut(s)	135, 298, 315, 349, 487
Alw26I	GTCTC	1 cut(s)	149
AlwI	GGATC	2 cut(s)	423, 436
AoxI	GGCC	3 cut(s)	282, 459, 525
ApeKI	GCWGC	5 cut(s)	74, 99, 232, 312, 380
AspLEI	GCGC	2 cut(s)	50, 79
AspS9I	GGNCC	1 cut(s)	491
AsuHPI	GGTGA	3 cut(s)	196, 363, 382
AvaII	GGWCC	1 cut(s)	491
AxyI	CCTNAGG	1 cut(s)	375
BalI	TGGCCA	2 cut(s)	284, 527
BamHI	GGATCC	1 cut(s)	428
BanI	GGYRCC	1 cut(s)	448
BanII	GRGCYC	1 cut(s)	371
BbsI	GAAGAC	1 cut(s)	379
BbvI	GCAGC	5 cut(s)	86, 111, 244, 324, 367
BccI	CCATC	2 cut(s)	262, 536
BciVI	GTATCC	1 cut(s)	193
BcoDI	GTCTC	1 cut(s)	149
BfoI	RGCGCY	1 cut(s)	80
BfrI	CTTAAG	1 cut(s)	293
BfuAI	ACCTGC	1 cut(s)	370
BfuI	GTATCC	1 cut(s)	193
BisI	GCNGC	6 cut(s)	72, 75, 100, 233, 313, 381
BlsI	GCNGC	6 cut(s)	73, 76, 101, 234, 314, 382
Bme18I	GGWCC	1 cut(s)	491
BmgT120I	GGNCC	1 cut(s)	491
BmiI	GGNNCC	3 cut(s)	430, 450, 493
BmsI	GCATC	1 cut(s)	410
BpiI	GAAGAC	1 cut(s)	379
Bpu10I	CCTNAGC	1 cut(s)	345
BpuEI	CTTGAG	1 cut(s)	151
BsaHI	GRCGYC	2 cut(s)	63, 158
BsaWI	WCCGGW	1 cut(s)	451
BsaXI	ACNNNNNCTCC	4 cut(s)	203, 233, 400, 430
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 425
Bse1I	ACTGG	1 cut(s)	430
Bse21I	CCTNAGG	1 cut(s)	375
Bse3DI	GCAATG	1 cut(s)	522
BseLI	CCNNNNNNNGG	2 cut(s)	118, 425
BseMI	GCAATG	1 cut(s)	522
BseMII	CTCAG	2 cut(s)	218, 366
BseNI	ACTGG	1 cut(s)	430
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	5 cut(s)	86, 111, 244, 324, 367
BseYI	CCCAGC	1 cut(s)	495
BsgI	GTGCAG	1 cut(s)	118
Bsh1236I	CGCG	1 cut(s)	140
BshFI	GGCC	3 cut(s)	284, 461, 527
BshNI	GGYRCC	1 cut(s)	448
BsiSI	CCGG	3 cut(s)	209, 432, 452
BslI	CCNNNNNNNGG	2 cut(s)	118, 425
BsmAI	GTCTC	1 cut(s)	149
BsmBI	CGTCTC	1 cut(s)	149
BsmI	GAATGC	1 cut(s)	542
BsnI	GGCC	3 cut(s)	284, 461, 527
Bsp1286I	GDGCHC	1 cut(s)	371
Bsp143I	GATC	1 cut(s)	428
BspACI	CCGC	8 cut(s)	20, 71, 89, 122, 152, 246, 365, 435
BspANI	GGCC	3 cut(s)	284, 461, 527
BspCNI	CTCAG	2 cut(s)	217, 367
BspFNI	CGCG	1 cut(s)	140
BspLI	GGNNCC	3 cut(s)	430, 450, 493
BspMI	ACCTGC	1 cut(s)	370
BspPI	GGATC	2 cut(s)	423, 436
BspT107I	GGYRCC	1 cut(s)	448
BspTI	CTTAAG	1 cut(s)	293
BsrBI	CCGCTC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	522
BsrI	ACTGG	1 cut(s)	430
BssMI	GATC	1 cut(s)	428
BssNI	GRCGYC	2 cut(s)	63, 158
Bst4CI	ACNGT	1 cut(s)	85
BstACI	GRCGYC	2 cut(s)	63, 158
BstAFI	CTTAAG	1 cut(s)	293
BstAPI	GCANNNNNTGC	1 cut(s)	548
BstC8I	GCNNGC	5 cut(s)	46, 237, 310, 367, 501
BstDEI	CTNAG	3 cut(s)	204, 345, 375
BstFNI	CGCG	1 cut(s)	140
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	2 cut(s)	50, 79
BstKTI	GATC	1 cut(s)	431
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	1 cut(s)	428
BstMWI	GCNNNNNNNGC	1 cut(s)	548
BstNSI	RCATGY	2 cut(s)	312, 503
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	5 cut(s)	86, 111, 244, 324, 367
BstV2I	GAAGAC	1 cut(s)	379
BstX2I	RGATCY	1 cut(s)	428
BstXI	CCANNNNNNTGG	1 cut(s)	503
BstYI	RGATCY	1 cut(s)	428
Bsu36I	CCTNAGG	1 cut(s)	375
BsuI	GTATCC	1 cut(s)	193
BsuRI	GGCC	3 cut(s)	284, 461, 527
BtsI	GCAGTG	2 cut(s)	303, 327
BtsIMutI	CAGTG	2 cut(s)	303, 327
BveI	ACCTGC	1 cut(s)	370
Cac8I	GCNNGC	5 cut(s)	46, 237, 310, 367, 501
CfoI	GCGC	2 cut(s)	50, 79
Cfr13I	GGNCC	1 cut(s)	491
CseI	GACGC	1 cut(s)	166
CspCI	CAANNNNNGTGG	2 cut(s)	504, 539
CviAII	CATG	3 cut(s)	229, 309, 500
DdeI	CTNAG	3 cut(s)	204, 345, 375
DpnI	GATC	1 cut(s)	430
DpnII	GATC	1 cut(s)	428
EaeI	YGGCCR	2 cut(s)	282, 525
EciI	GGCGGA	3 cut(s)	104, 167, 450
Eco24I	GRGCYC	1 cut(s)	371
Eco47I	GGWCC	1 cut(s)	491
Eco57I	CTGAAG	1 cut(s)	530
Eco81I	CCTNAGG	1 cut(s)	375
EcoT22I	ATGCAT	1 cut(s)	403
EcoT38I	GRGCYC	1 cut(s)	371
Esp3I	CGTCTC	1 cut(s)	149
FaeI	CATG	3 cut(s)	232, 312, 503
FaiI	YATR	6 cut(s)	230, 310, 359, 482, 501, 558
FatI	CATG	3 cut(s)	228, 308, 499
FauI	CCCGC	2 cut(s)	239, 358
Fnu4HI	GCNGC	6 cut(s)	72, 75, 100, 233, 313, 381
FriOI	GRGCYC	1 cut(s)	371
Fsp4HI	GCNGC	6 cut(s)	72, 75, 100, 233, 313, 381
GlaI	GCGC	2 cut(s)	49, 78
GluI	GCNGC	6 cut(s)	72, 75, 100, 233, 313, 381
GsaI	CCCAGC	1 cut(s)	499
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	3 cut(s)	284, 461, 527
HapII	CCGG	3 cut(s)	209, 432, 452
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	2 cut(s)	50, 79
Hin1I	GRCGYC	2 cut(s)	63, 158
Hin1II	CATG	3 cut(s)	232, 312, 503
Hin6I	GCGC	2 cut(s)	48, 77
HinP1I	GCGC	2 cut(s)	48, 77
HindIII	AAGCTT	2 cut(s)	347, 485
HinfI	GANTC	1 cut(s)	179
HpaII	CCGG	3 cut(s)	209, 432, 452
HphI	GGTGA	3 cut(s)	196, 363, 382
Hpy188I	TCNGA	3 cut(s)	68, 337, 510
Hpy188III	TCNNGA	1 cut(s)	112
Hpy99I	CGWCG	2 cut(s)	44, 65
HpyAV	CCTTC	5 cut(s)	109, 142, 160, 181, 505
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	2 cut(s)	63, 225
HpyCH4V	TGCA	6 cut(s)	99, 232, 308, 312, 401, 542
HpyF10VI	GCNNNNNNNGC	1 cut(s)	548
HpyF3I	CTNAG	3 cut(s)	204, 345, 375
HpySE526I	ACGT	2 cut(s)	63, 225
Hsp92I	GRCGYC	2 cut(s)	63, 158
Hsp92II	CATG	3 cut(s)	232, 312, 503
HspAI	GCGC	2 cut(s)	48, 77
Kzo9I	GATC	1 cut(s)	428
LmnI	GCTCC	2 cut(s)	249, 303
Lsp1109I	GCAGC	5 cut(s)	86, 111, 244, 324, 367
LweI	GCATC	1 cut(s)	410
MaeII	ACGT	2 cut(s)	63, 225
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	1 cut(s)	430
MbiI	CCGCTC	1 cut(s)	71
MboI	GATC	1 cut(s)	428
MboII	GAAGA	2 cut(s)	277, 379
MflI	RGATCY	1 cut(s)	428
MhlI	GDGCHC	1 cut(s)	371
MlsI	TGGCCA	2 cut(s)	284, 527
MluCI	AATT	1 cut(s)	466
MluNI	TGGCCA	2 cut(s)	284, 527
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	3 cut(s)	247, 343, 370
Mox20I	TGGCCA	2 cut(s)	284, 527
Mph1103I	ATGCAT	1 cut(s)	403
MscI	TGGCCA	2 cut(s)	284, 527
MseI	TTAA	2 cut(s)	261, 294
Msp20I	TGGCCA	2 cut(s)	284, 527
MspA1I	CMGCKG	1 cut(s)	246
MspCI	CTTAAG	1 cut(s)	293
MspI	CCGG	3 cut(s)	209, 432, 452
Mva1269I	GAATGC	1 cut(s)	542
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	1 cut(s)	548
NdeII	GATC	1 cut(s)	428
NlaIII	CATG	3 cut(s)	232, 312, 503
NlaIV	GGNNCC	3 cut(s)	430, 450, 493
NsiI	ATGCAT	1 cut(s)	403
NspI	RCATGY	2 cut(s)	312, 503
PaeI	GCATGC	2 cut(s)	312, 503
PctI	GAATGC	1 cut(s)	542
PfeI	GAWTC	1 cut(s)	179
PflMI	CCANNNNNTGG	1 cut(s)	118
PkrI	GCNGC	6 cut(s)	73, 76, 101, 234, 314, 382
PsiI	TTATAA	1 cut(s)	482
PspFI	CCCAGC	1 cut(s)	495
PspN4I	GGNNCC	3 cut(s)	430, 450, 493
PspPI	GGNCC	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	428
SaqAI	TTAA	2 cut(s)	261, 294
SatI	GCNGC	6 cut(s)	72, 75, 100, 233, 313, 381
Sau3AI	GATC	1 cut(s)	428
Sau96I	GGNCC	1 cut(s)	491
SduI	GDGCHC	1 cut(s)	371
SfaNI	GCATC	1 cut(s)	410
SinI	GGWCC	1 cut(s)	491
SmlI	CTYRAG	2 cut(s)	130, 293
SmoI	CTYRAG	2 cut(s)	130, 293
SphI	GCATGC	2 cut(s)	312, 503
Sse9I	AATT	1 cut(s)	466
SsiI	CCGC	8 cut(s)	20, 71, 89, 122, 152, 246, 365, 435
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	2 cut(s)	66, 228
TasI	AATT	1 cut(s)	466
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	2 cut(s)	261, 294
Tru9I	TTAA	2 cut(s)	261, 294
TscAI	CASTG	2 cut(s)	310, 334
TseI	GCWGC	5 cut(s)	74, 99, 232, 312, 380
TspGWI	ACGGA	2 cut(s)	22, 489
TspRI	CASTG	2 cut(s)	310, 334
Van91I	CCANNNNNTGG	1 cut(s)	118
Vha464I	CTTAAG	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	491
XceI	RCATGY	2 cut(s)	312, 503
ZraI	GACGTC	1 cut(s)	64
Zsp2I	ATGCAT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.