Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0015442

Physical Location & Seq

Genomic Coordinates Forward (+)

6995590 .. 6998637

Gene Structure 3048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g10260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGACGAGGAAAATGATTGCGGTGTTGTTCTCCGTTTTCGTCGCCTGCGCTTCTGTTGGCGACGTCAGAGCGGCAGCGCCAACGGTGGCGGAGAAGTGCAGCGACAAGTTCCAGAAGGTTGCGGTGTGCTTGAGCTACGCGACAGGGAAGGCGGAGATGCCGACGAAGGAGTGCTGTGATTCGGTGAAGGGGATAAGGGAGACTCAGCCGGAGTGCCTGTGTTACGTCATGCAGCAGGCGAACAGCGGGAGCGAGGAGATTAAGAAGATGGGGGTTCAGGTGGCCAAGTTGCTTCAGCTCCCCACTGCATGCAGCTTGAAAAACGCCACTGCCTCCGATTGCCCTAAGCTTTTAGGCATACCTGCGGGCTCACCTGAGGCTGCTGTCTTCACCAATAATGCATCATCAACAGCAACTCCCACTACTGGAGCTGGCGGACAACAATCGGCACCGGAAAAGGTCCGCAATTCCAACGGAGTTACAAAGCTTGGACCCCAGCATGCTGGTCTGAAGGCAATGGCTGTGGCCATCGTTTTCTTTGCATTCCCTGCTCTGTATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006810 GO:0006869 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008289 GO:0009505 GO:0009605 GO:0009607 GO:0009620 GO:0010876 GO:0012505 GO:0016020 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0033036 GO:0042335 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048856 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0071702 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

188

Amino Acids

19.44

Weight (kDa)

8.86

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	16 - 114	6.5e-13	Probable lipid transfer
Tryp_alpha_amyl	PF00234	33 - 114	3e-09	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27950
fragaria_vesca	FvH4_4g23670
malus_domestica	MD16G1120100.v1.1
prunus_persica	Prupe.1G225100_v2.0.a1
pyrus_communis	pycom13g10450 pycom16g10260
rosa_chinensis	RchiOBHm_Chr4g0430161
rosa_laevigata	RLG00000007000
rosa_multiflora	Rmu_sc0004036.1_g000011
rosa_roxburghii	Rroxscaffold_5G00371950
rosa_rugosa	Rorug04G0240900
rosa_samantha	Rh4AG297700 Rh4BG304100 Rh4CG319600 Rh4DG301500
rosa_wichuraiana	Rw4G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	66
Acc36I	ACCTGC	1 cut(s)	370
AccB1I	GGYRCC	1 cut(s)	448
AccBSI	CCGCTC	1 cut(s)	71
AccII	CGCG	1 cut(s)	140
AciI	CCGC	9 cut(s)	20, 71, 89, 122, 152, 246, 365, 435, 463
AcoI	YGGCCR	2 cut(s)	282, 525
AcuI	CTGAAG	2 cut(s)	278, 530
AcyI	GRCGYC	1 cut(s)	63
AfiI	CCNNNNNNNGG	1 cut(s)	425
AgsI	TTSAA	1 cut(s)	319
AluBI	AGCT	6 cut(s)	135, 298, 315, 349, 431, 487
AluI	AGCT	6 cut(s)	135, 298, 315, 349, 431, 487
Alw26I	GTCTC	1 cut(s)	194
AoxI	GGCC	2 cut(s)	282, 525
ApeKI	GCWGC	5 cut(s)	74, 99, 232, 312, 380
AspLEI	GCGC	2 cut(s)	50, 79
AspS9I	GGNCC	2 cut(s)	460, 491
AsuHPI	GGTGA	3 cut(s)	196, 363, 382
AvaII	GGWCC	2 cut(s)	460, 491
AxyI	CCTNAGG	1 cut(s)	375
BalI	TGGCCA	2 cut(s)	284, 527
BanI	GGYRCC	1 cut(s)	448
BanII	GRGCYC	1 cut(s)	371
BbsI	GAAGAC	1 cut(s)	379
BbvI	GCAGC	5 cut(s)	86, 111, 244, 324, 367
BccI	CCATC	2 cut(s)	262, 536
BcoDI	GTCTC	1 cut(s)	194
BfoI	RGCGCY	1 cut(s)	80
BfuAI	ACCTGC	1 cut(s)	370
BisI	GCNGC	6 cut(s)	72, 75, 100, 233, 313, 381
BlsI	GCNGC	6 cut(s)	73, 76, 101, 234, 314, 382
Bme18I	GGWCC	2 cut(s)	460, 491
BmgT120I	GGNCC	2 cut(s)	460, 491
BmiI	GGNNCC	2 cut(s)	450, 493
BmsI	GCATC	2 cut(s)	147, 410
BpiI	GAAGAC	1 cut(s)	379
BpmI	CTGGAG	1 cut(s)	447
Bpu10I	CCTNAGC	1 cut(s)	345
BpuEI	CTTGAG	1 cut(s)	151
BsaHI	GRCGYC	1 cut(s)	63
BsaWI	WCCGGW	1 cut(s)	451
BsaXI	ACNNNNNCTCC	4 cut(s)	203, 233, 400, 430
Bsc4I	CCNNNNNNNGG	1 cut(s)	425
Bse1I	ACTGG	1 cut(s)	430
Bse21I	CCTNAGG	1 cut(s)	375
Bse3DI	GCAATG	1 cut(s)	522
BseLI	CCNNNNNNNGG	1 cut(s)	425
BseMI	GCAATG	1 cut(s)	522
BseMII	CTCAG	2 cut(s)	218, 366
BseNI	ACTGG	1 cut(s)	430
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	5 cut(s)	86, 111, 244, 324, 367
BseYI	CCCAGC	1 cut(s)	495
BsgI	GTGCAG	1 cut(s)	118
Bsh1236I	CGCG	1 cut(s)	140
BshFI	GGCC	2 cut(s)	284, 527
BshNI	GGYRCC	1 cut(s)	448
BsiSI	CCGG	2 cut(s)	209, 452
BslI	CCNNNNNNNGG	1 cut(s)	425
BsmAI	GTCTC	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	542
BsnI	GGCC	2 cut(s)	284, 527
Bsp1286I	GDGCHC	1 cut(s)	371
BspACI	CCGC	9 cut(s)	20, 71, 89, 122, 152, 246, 365, 435, 463
BspANI	GGCC	2 cut(s)	284, 527
BspCNI	CTCAG	2 cut(s)	217, 367
BspFNI	CGCG	1 cut(s)	140
BspLI	GGNNCC	2 cut(s)	450, 493
BspMI	ACCTGC	1 cut(s)	370
BspT107I	GGYRCC	1 cut(s)	448
BsrBI	CCGCTC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	522
BsrI	ACTGG	1 cut(s)	430
BssNI	GRCGYC	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	85
BstACI	GRCGYC	1 cut(s)	63
BstAPI	GCANNNNNTGC	1 cut(s)	548
BstC8I	GCNNGC	6 cut(s)	46, 237, 310, 367, 433, 501
BstDEI	CTNAG	3 cut(s)	204, 345, 375
BstFNI	CGCG	1 cut(s)	140
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	2 cut(s)	50, 79
BstMAI	GTCTC	1 cut(s)	194
BstMWI	GCNNNNNNNGC	1 cut(s)	548
BstNSI	RCATGY	2 cut(s)	312, 503
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	5 cut(s)	86, 111, 244, 324, 367
BstV2I	GAAGAC	1 cut(s)	379
BstXI	CCANNNNNNTGG	1 cut(s)	503
Bsu36I	CCTNAGG	1 cut(s)	375
BsuRI	GGCC	2 cut(s)	284, 527
BtsI	GCAGTG	2 cut(s)	303, 327
BtsIMutI	CAGTG	2 cut(s)	303, 327
BveI	ACCTGC	1 cut(s)	370
Cac8I	GCNNGC	6 cut(s)	46, 237, 310, 367, 433, 501
CfoI	GCGC	2 cut(s)	50, 79
Cfr13I	GGNCC	2 cut(s)	460, 491
CspCI	CAANNNNNGTGG	2 cut(s)	504, 539
CviAII	CATG	3 cut(s)	229, 309, 500
DdeI	CTNAG	3 cut(s)	204, 345, 375
EaeI	YGGCCR	2 cut(s)	282, 525
EciI	GGCGGA	3 cut(s)	104, 167, 450
Eco24I	GRGCYC	1 cut(s)	371
Eco47I	GGWCC	2 cut(s)	460, 491
Eco57I	CTGAAG	2 cut(s)	278, 530
Eco81I	CCTNAGG	1 cut(s)	375
EcoT22I	ATGCAT	1 cut(s)	403
EcoT38I	GRGCYC	1 cut(s)	371
FaeI	CATG	3 cut(s)	232, 312, 503
FaiI	YATR	5 cut(s)	230, 310, 359, 501, 558
FatI	CATG	3 cut(s)	228, 308, 499
FauI	CCCGC	2 cut(s)	239, 358
Fnu4HI	GCNGC	6 cut(s)	72, 75, 100, 233, 313, 381
FriOI	GRGCYC	1 cut(s)	371
Fsp4HI	GCNGC	6 cut(s)	72, 75, 100, 233, 313, 381
GlaI	GCGC	2 cut(s)	49, 78
GluI	GCNGC	6 cut(s)	72, 75, 100, 233, 313, 381
GsaI	CCCAGC	1 cut(s)	499
GsuI	CTGGAG	1 cut(s)	447
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	2 cut(s)	284, 527
HapII	CCGG	2 cut(s)	209, 452
HhaI	GCGC	2 cut(s)	50, 79
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	3 cut(s)	232, 312, 503
Hin6I	GCGC	2 cut(s)	48, 77
HinP1I	GCGC	2 cut(s)	48, 77
HindIII	AAGCTT	2 cut(s)	347, 485
HinfI	GANTC	2 cut(s)	179, 202
HpaII	CCGG	2 cut(s)	209, 452
HphI	GGTGA	3 cut(s)	196, 363, 382
Hpy188I	TCNGA	3 cut(s)	68, 337, 510
Hpy188III	TCNNGA	1 cut(s)	112
Hpy99I	CGWCG	3 cut(s)	44, 65, 166
HpyAV	CCTTC	5 cut(s)	109, 142, 160, 181, 505
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	2 cut(s)	63, 225
HpyCH4V	TGCA	6 cut(s)	99, 232, 308, 312, 401, 542
HpyF10VI	GCNNNNNNNGC	1 cut(s)	548
HpyF3I	CTNAG	3 cut(s)	204, 345, 375
HpySE526I	ACGT	2 cut(s)	63, 225
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	3 cut(s)	232, 312, 503
HspAI	GCGC	2 cut(s)	48, 77
LmnI	GCTCC	3 cut(s)	249, 303, 428
Lsp1109I	GCAGC	5 cut(s)	86, 111, 244, 324, 367
LweI	GCATC	2 cut(s)	147, 410
MaeII	ACGT	2 cut(s)	63, 225
MaeIII	GTNAC	2 cut(s)	221, 478
MbiI	CCGCTC	1 cut(s)	71
MboII	GAAGA	2 cut(s)	277, 379
MhlI	GDGCHC	1 cut(s)	371
MlsI	TGGCCA	2 cut(s)	284, 527
MluCI	AATT	1 cut(s)	466
MluNI	TGGCCA	2 cut(s)	284, 527
MlyI	GAGTC	1 cut(s)	196
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	3 cut(s)	247, 343, 370
Mox20I	TGGCCA	2 cut(s)	284, 527
Mph1103I	ATGCAT	1 cut(s)	403
MscI	TGGCCA	2 cut(s)	284, 527
MseI	TTAA	1 cut(s)	261
Msp20I	TGGCCA	2 cut(s)	284, 527
MspA1I	CMGCKG	1 cut(s)	246
MspI	CCGG	2 cut(s)	209, 452
Mva1269I	GAATGC	1 cut(s)	542
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	1 cut(s)	548
NlaIII	CATG	3 cut(s)	232, 312, 503
NlaIV	GGNNCC	2 cut(s)	450, 493
NsiI	ATGCAT	1 cut(s)	403
NspI	RCATGY	2 cut(s)	312, 503
PaeI	GCATGC	2 cut(s)	312, 503
PctI	GAATGC	1 cut(s)	542
PfeI	GAWTC	1 cut(s)	179
PkrI	GCNGC	6 cut(s)	73, 76, 101, 234, 314, 382
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PspFI	CCCAGC	1 cut(s)	495
PspN4I	GGNNCC	2 cut(s)	450, 493
PspPI	GGNCC	2 cut(s)	460, 491
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	6 cut(s)	72, 75, 100, 233, 313, 381
Sau96I	GGNCC	2 cut(s)	460, 491
SchI	GAGTC	1 cut(s)	196
SduI	GDGCHC	1 cut(s)	371
SfaNI	GCATC	2 cut(s)	147, 410
SinI	GGWCC	2 cut(s)	460, 491
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
SphI	GCATGC	2 cut(s)	312, 503
Sse9I	AATT	1 cut(s)	466
SsiI	CCGC	9 cut(s)	20, 71, 89, 122, 152, 246, 365, 435, 463
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	2 cut(s)	66, 228
TasI	AATT	1 cut(s)	466
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	2 cut(s)	310, 334
TseI	GCWGC	5 cut(s)	74, 99, 232, 312, 380
TspGWI	ACGGA	2 cut(s)	22, 489
TspRI	CASTG	2 cut(s)	310, 334
VpaK11BI	GGWCC	2 cut(s)	460, 491
XceI	RCATGY	2 cut(s)	312, 503
ZraI	GACGTC	1 cut(s)	64
Zsp2I	ATGCAT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.