Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0015442

Physical Location & Seq

Genomic Coordinates Forward (+)

6993259 .. 6994939

Gene Structure 1681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g10450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGATGAGGAAAATGATGGCGGTGCTGTTCTCCGTTTTCGTCGCCTGCGCTTTGGTTGGCGAGGTCAGAGCGGCGGCGCCAACGGTGGCGGAGAAGTGCAACGACAAGTTCCAGAAGGTGGCGGTGTGCTTGAACTACGCGACGGGGAAGGCGGATGCGCCAACGAAGGAGTGCTGTGATTCGGTGAAGGGGATAAGGGAGACTCAGCCGGAGTGCCTATGTTACGTCATTCAACAGGCCAACAATGGGAGCGAGGAGATTAAGAAGATGGGGATTCAGGTGGCCAAGTTGATCCAGCTCCCCACAGCATGCAGCTTGAAAAACGCCACTTCCTCCGACTGCCCTAAGCTTCTAGGCATACCTGCTGGCTCACCAGAGGCTGCTATCTTCAACAATAATGCATCATCAACGGCTACTCCCACTGCTGGAGCTGTCGGGCAACAATCGGCGCCCGAAAAGGACGGAGTTTCCAAGCTTGGACCCCAGCATGCTGGTCTGATGGCAATGGCTGTGGCCATCTTCTTCTTTGCATTCCCCGCACTATATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006810 GO:0006869 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008289 GO:0009505 GO:0009605 GO:0009607 GO:0009620 GO:0010876 GO:0012505 GO:0016020 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0033036 GO:0042335 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048856 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0071702 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

184

Amino Acids

19.17

Weight (kDa)

8.36

Isoelectric Point (pI)

45.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27950
fragaria_vesca	FvH4_4g23670
malus_domestica	MD16G1120100.v1.1
prunus_persica	Prupe.1G225100_v2.0.a1
pyrus_communis	pycom13g10450 pycom16g10260
rosa_chinensis	RchiOBHm_Chr4g0430161
rosa_laevigata	RLG00000007000
rosa_multiflora	Rmu_sc0004036.1_g000011
rosa_roxburghii	Rroxscaffold_5G00371950
rosa_rugosa	Rorug04G0240900
rosa_samantha	Rh4AG297700 Rh4BG304100 Rh4CG319600 Rh4DG301500
rosa_wichuraiana	Rw4G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	370
AccB1I	GGYRCC	2 cut(s)	76, 448
AccB7I	CCANNNNNTGG	1 cut(s)	118
AccBSI	CCGCTC	1 cut(s)	71
AccII	CGCG	1 cut(s)	140
AciI	CCGC	7 cut(s)	20, 71, 74, 89, 122, 152, 537
AclWI	GGATC	1 cut(s)	286
AcoI	YGGCCR	2 cut(s)	282, 513
AcyI	GRCGYC	2 cut(s)	77, 449
AfiI	CCNNNNNNNGG	3 cut(s)	118, 246, 425
AgsI	TTSAA	4 cut(s)	133, 233, 319, 391
AluBI	AGCT	5 cut(s)	298, 315, 349, 431, 475
AluI	AGCT	5 cut(s)	298, 315, 349, 431, 475
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	1 cut(s)	286
AlwNI	CAGNNNCTG	1 cut(s)	380
AoxI	GGCC	3 cut(s)	237, 282, 513
ApeKI	GCWGC	2 cut(s)	312, 380
AspLEI	GCGC	4 cut(s)	50, 79, 160, 451
AspS9I	GGNCC	1 cut(s)	479
AsuHPI	GGTGA	2 cut(s)	196, 363
AvaII	GGWCC	1 cut(s)	479
BalI	TGGCCA	2 cut(s)	284, 515
BanI	GGYRCC	2 cut(s)	76, 448
BbvI	GCAGC	2 cut(s)	324, 367
BccI	CCATC	4 cut(s)	10, 262, 493, 524
BceAI	ACGGC	1 cut(s)	426
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	1 cut(s)	353
BfoI	RGCGCY	2 cut(s)	80, 452
BfuAI	ACCTGC	1 cut(s)	370
BisI	GCNGC	4 cut(s)	72, 75, 313, 381
BlsI	GCNGC	4 cut(s)	73, 76, 314, 382
Bme18I	GGWCC	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	3 cut(s)	78, 450, 481
BmsI	GCATC	2 cut(s)	145, 410
BpmI	CTGGAG	1 cut(s)	447
Bpu10I	CCTNAGC	1 cut(s)	345
BsaHI	GRCGYC	2 cut(s)	77, 449
BsaXI	ACNNNNNCTCC	2 cut(s)	400, 430
Bsc4I	CCNNNNNNNGG	3 cut(s)	118, 246, 425
Bse3DI	GCAATG	1 cut(s)	510
BseGI	GGATG	1 cut(s)	160
BseLI	CCNNNNNNNGG	3 cut(s)	118, 246, 425
BseMI	GCAATG	1 cut(s)	510
BseMII	CTCAG	1 cut(s)	218
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	2 cut(s)	324, 367
BseYI	CCCAGC	1 cut(s)	483
Bsh1236I	CGCG	1 cut(s)	140
BshFI	GGCC	3 cut(s)	239, 284, 515
BshNI	GGYRCC	2 cut(s)	76, 448
BsiSI	CCGG	1 cut(s)	209
BslI	CCNNNNNNNGG	3 cut(s)	118, 246, 425
BsmAI	GTCTC	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	530
BsnI	GGCC	3 cut(s)	239, 284, 515
Bsp143I	GATC	1 cut(s)	291
BspACI	CCGC	7 cut(s)	20, 71, 74, 89, 122, 152, 537
BspANI	GGCC	3 cut(s)	239, 284, 515
BspCNI	CTCAG	1 cut(s)	217
BspFNI	CGCG	1 cut(s)	140
BspLI	GGNNCC	3 cut(s)	78, 450, 481
BspMI	ACCTGC	1 cut(s)	370
BspPI	GGATC	1 cut(s)	286
BspT107I	GGYRCC	2 cut(s)	76, 448
BsrBI	CCGCTC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	510
BssMI	GATC	1 cut(s)	291
BssNI	GRCGYC	2 cut(s)	77, 449
Bst4CI	ACNGT	1 cut(s)	85
BstACI	GRCGYC	2 cut(s)	77, 449
BstC8I	GCNNGC	4 cut(s)	46, 310, 367, 489
BstDEI	CTNAG	2 cut(s)	204, 345
BstF5I	GGATG	1 cut(s)	160
BstFNI	CGCG	1 cut(s)	140
BstH2I	RGCGCY	2 cut(s)	80, 452
BstHHI	GCGC	4 cut(s)	50, 79, 160, 451
BstKTI	GATC	1 cut(s)	294
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	1 cut(s)	291
BstMWI	GCNNNNNNNGC	1 cut(s)	536
BstNSI	RCATGY	2 cut(s)	312, 491
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	2 cut(s)	324, 367
BstXI	CCANNNNNNTGG	1 cut(s)	491
BsuRI	GGCC	3 cut(s)	239, 284, 515
BtsCI	GGATG	1 cut(s)	160
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	1 cut(s)	420
BveI	ACCTGC	1 cut(s)	370
Cac8I	GCNNGC	4 cut(s)	46, 310, 367, 489
CaiI	CAGNNNCTG	1 cut(s)	380
CfoI	GCGC	4 cut(s)	50, 79, 160, 451
Cfr13I	GGNCC	1 cut(s)	479
CspCI	CAANNNNNGTGG	2 cut(s)	492, 527
CviAII	CATG	2 cut(s)	309, 488
DdeI	CTNAG	2 cut(s)	204, 345
DinI	GGCGCC	2 cut(s)	78, 450
DpnI	GATC	1 cut(s)	293
DpnII	GATC	1 cut(s)	291
EaeI	YGGCCR	2 cut(s)	282, 513
EciI	GGCGGA	2 cut(s)	104, 167
Eco47I	GGWCC	1 cut(s)	479
EcoT22I	ATGCAT	1 cut(s)	403
EgeI	GGCGCC	2 cut(s)	78, 450
EheI	GGCGCC	2 cut(s)	78, 450
FaeI	CATG	2 cut(s)	312, 491
FaiI	YATR	6 cut(s)	220, 310, 359, 489, 544, 546
FatI	CATG	2 cut(s)	308, 487
FauI	CCCGC	1 cut(s)	544
Fnu4HI	GCNGC	4 cut(s)	72, 75, 313, 381
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	4 cut(s)	72, 75, 313, 381
FspBI	CTAG	1 cut(s)	353
GlaI	GCGC	4 cut(s)	49, 78, 159, 450
GluI	GCNGC	4 cut(s)	72, 75, 313, 381
GsaI	CCCAGC	1 cut(s)	487
GsuI	CTGGAG	1 cut(s)	447
HaeII	RGCGCY	2 cut(s)	80, 452
HaeIII	GGCC	3 cut(s)	239, 284, 515
HapII	CCGG	1 cut(s)	209
HhaI	GCGC	4 cut(s)	50, 79, 160, 451
Hin1I	GRCGYC	2 cut(s)	77, 449
Hin1II	CATG	2 cut(s)	312, 491
Hin6I	GCGC	4 cut(s)	48, 77, 158, 449
HinP1I	GCGC	4 cut(s)	48, 77, 158, 449
HindIII	AAGCTT	2 cut(s)	347, 473
HinfI	GANTC	3 cut(s)	179, 202, 274
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	2 cut(s)	196, 363
Hpy188I	TCNGA	3 cut(s)	68, 337, 498
Hpy188III	TCNNGA	1 cut(s)	112
Hpy99I	CGWCG	2 cut(s)	44, 145
HpyAV	CCTTC	4 cut(s)	109, 142, 160, 181
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	4 cut(s)	99, 312, 401, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	536
HpyF3I	CTNAG	2 cut(s)	204, 345
HpySE526I	ACGT	1 cut(s)	225
Hsp92I	GRCGYC	2 cut(s)	77, 449
Hsp92II	CATG	2 cut(s)	312, 491
HspAI	GCGC	4 cut(s)	48, 77, 158, 449
KasI	GGCGCC	2 cut(s)	76, 448
Kzo9I	GATC	1 cut(s)	291
LmnI	GCTCC	3 cut(s)	249, 303, 428
Lsp1109I	GCAGC	2 cut(s)	324, 367
LweI	GCATC	2 cut(s)	145, 410
MaeI	CTAG	1 cut(s)	353
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	1 cut(s)	293
MbiI	CCGCTC	1 cut(s)	71
MboI	GATC	1 cut(s)	291
MboII	GAAGA	4 cut(s)	277, 379, 511, 514
MlsI	TGGCCA	2 cut(s)	284, 515
MluNI	TGGCCA	2 cut(s)	284, 515
Mly113I	GGCGCC	2 cut(s)	77, 449
MlyI	GAGTC	1 cut(s)	196
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	4 cut(s)	55, 247, 343, 370
Mox20I	TGGCCA	2 cut(s)	284, 515
Mph1103I	ATGCAT	1 cut(s)	403
MscI	TGGCCA	2 cut(s)	284, 515
MseI	TTAA	1 cut(s)	261
Msp20I	TGGCCA	2 cut(s)	284, 515
MspI	CCGG	1 cut(s)	209
Mva1269I	GAATGC	1 cut(s)	530
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	1 cut(s)	536
NarI	GGCGCC	2 cut(s)	77, 449
NdeII	GATC	1 cut(s)	291
NlaIII	CATG	2 cut(s)	312, 491
NlaIV	GGNNCC	3 cut(s)	78, 450, 481
NsiI	ATGCAT	1 cut(s)	403
NspI	RCATGY	2 cut(s)	312, 491
PaeI	GCATGC	2 cut(s)	312, 491
PctI	GAATGC	1 cut(s)	530
PfeI	GAWTC	2 cut(s)	179, 274
PflMI	CCANNNNNTGG	1 cut(s)	118
PkrI	GCNGC	4 cut(s)	73, 76, 314, 382
PleI	GAGTC	1 cut(s)	196
PluTI	GGCGCC	2 cut(s)	80, 452
PpsI	GAGTC	1 cut(s)	196
PspFI	CCCAGC	1 cut(s)	483
PspN4I	GGNNCC	3 cut(s)	78, 450, 481
PspPI	GGNCC	1 cut(s)	479
PstNI	CAGNNNCTG	1 cut(s)	380
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	4 cut(s)	72, 75, 313, 381
Sau3AI	GATC	1 cut(s)	291
Sau96I	GGNCC	1 cut(s)	479
SchI	GAGTC	1 cut(s)	196
SfaNI	GCATC	2 cut(s)	145, 410
SfoI	GGCGCC	2 cut(s)	78, 450
SinI	GGWCC	1 cut(s)	479
SphI	GCATGC	2 cut(s)	312, 491
SsiI	CCGC	7 cut(s)	20, 71, 74, 89, 122, 152, 537
SspDI	GGCGCC	2 cut(s)	76, 448
SspMI	CTAG	1 cut(s)	353
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	1 cut(s)	228
TauI	GCSGC	2 cut(s)	74, 77
TfiI	GAWTC	2 cut(s)	179, 274
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	1 cut(s)	427
TseI	GCWGC	2 cut(s)	312, 380
TspGWI	ACGGA	2 cut(s)	22, 477
TspRI	CASTG	1 cut(s)	427
Van91I	CCANNNNNTGG	1 cut(s)	118
VpaK11BI	GGWCC	1 cut(s)	479
XceI	RCATGY	2 cut(s)	312, 491
XspI	CTAG	1 cut(s)	353
Zsp2I	ATGCAT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.