AT1G28190

Domain of unknown function (DUF4228)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014075
Physical Location & Seq
Reverse (-)
9846747 .. 9848015
1269 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G28190.1

Sequence Viewer

Length: 801 bp
ATGGGTCATGATAACATCACAAAGCTCGGGAGTCTACTCGTAAAGCTACACAAAGGTCCTTCAAGTTGGCTTTGTCTTCATCCTCGACCAGACCGAACCAGCAACGGCGGACGAATCAAGCTCGTCAGATCCGACGGTTCTTTACAAGTCTACGATCGTCCCGTAGTAGTCTCAGAGCTAACAAAAGACTTCCCAAAACACAAAATCTGTAGATCAGACTTACTCTACATCGGACAGAAAACCCCTGTTCTGTCTGAAACCGAAACACTTAAGCTAGGTCTCAACTACTTCCTCCTCCCATCAGATTTCTTCAAGAACGATCTCTCTTTCCTCACCATCGCCACCCTTAAAACCCCACAAAACGGTGGCGTTTTGGTGAAGAAGACTCAACAGCAACCTCAGCCGTTTCTTATACAAAAGGGAGAGAAAGGAGAGCGTTTAAGGATCCGTGTGTCTGAAGAGTTCGTGTCGGAACTGATGATGGAAGGGAAGAAAAACAGAGTAAACGAAGAGGAAGAGGAAGAAGAAGGAGGAGGAGAAGGAGAAGGTAGGGTTTGTACTACGGTGAAGTTGAAGAAAGACTATGTTCAATTGGTTGGTTTACGTAGATGGAAGCCAAAGCTTGAGACGATAACAGAGACTAAGGCAATGAAAGCAGCAACGATGGAGAAGACGAAGAAGAAGAGGAAAAGGTTTACTGTGATGAAGAAGAAGTCTCAGAGTGATTCAAGTTCGAAGCGTAAACTTCAATCCAAATCCAAGTCCAAAACTAAGAAAAGTATTATGAGGAAAATAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4228

Protein Analysis

266

Amino Acids

30.34

Weight (kDa)

9.97

Isoelectric Point (pI)

52.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PADRE PF14009 37 - 213 5.7e-26 PADRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014075)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28190
fragaria_vesca FvH4_4g22140
malus_domestica MD13G1134300.v1.1 MD16G1144900.v1.1
prunus_persica Prupe.1G211200_v2.0.a1
pyrus_communis pycom13g11710 pycom16g11450
rosa_chinensis RchiOBHm_Chr4g0428381
rosa_laevigata RLG00000007156
rosa_multiflora Rmu_sc0004698.1_g000010
rosa_roxburghii Rroxscaffold_5G00370040
rosa_rugosa Rorug04G0225200
rosa_samantha Rh4AG282200 Rh4BG287800 Rh4CG303500 Rh4DG284900
rosa_wichuraiana Rw4G024490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 34, 150
AciI CCGC 1 cut(s) 108
AclWI GGATC 3 cut(s) 123, 439, 452
AcuI CTGAAG 1 cut(s) 477
AfaI GTAC 1 cut(s) 559
AfiI CCNNNNNNNGG 1 cut(s) 362
AflII CTTAAG 1 cut(s) 269
AgsI TTSAA 6 cut(s) 63, 313, 574, 590, 729, 749
AluBI AGCT 6 cut(s) 25, 46, 121, 178, 274, 622
AluI AGCT 6 cut(s) 25, 46, 121, 178, 274, 622
Alw26I GTCTC 5 cut(s) 175, 284, 620, 632, 720
AlwI GGATC 3 cut(s) 123, 439, 452
Ama87I CYCGRG 1 cut(s) 26
ApeKI GCWGC 1 cut(s) 656
AspS9I GGNCC 1 cut(s) 56
AsuHPI GGTGA 3 cut(s) 325, 388, 577
AsuII TTCGAA 1 cut(s) 734
AvaI CYCGRG 1 cut(s) 26
AvaII GGWCC 1 cut(s) 56
BamHI GGATCC 1 cut(s) 444
BbsI GAAGAC 3 cut(s) 68, 389, 677
BbvCI CCTCAGC 1 cut(s) 399
BbvI GCAGC 1 cut(s) 668
BccI CCATC 5 cut(s) 307, 344, 475, 603, 658
BceAI ACGGC 2 cut(s) 121, 388
BcoDI GTCTC 5 cut(s) 175, 284, 620, 632, 720
BfaI CTAG 1 cut(s) 275
BfmI CTRYAG 1 cut(s) 208
BfrI CTTAAG 1 cut(s) 269
BisI GCNGC 1 cut(s) 657
BlsI GCNGC 1 cut(s) 658
Bme18I GGWCC 1 cut(s) 56
BmeT110I CYCGRG 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 446
BpiI GAAGAC 3 cut(s) 68, 389, 677
Bpu10I CCTNAGC 1 cut(s) 399
Bpu14I TTCGAA 1 cut(s) 734
BpuEI CTTGAG 1 cut(s) 644
BsaAI YACGTR 1 cut(s) 605
BsaI GGTCTC 1 cut(s) 284
Bsc4I CCNNNNNNNGG 1 cut(s) 362
Bse3DI GCAATG 1 cut(s) 654
BseGI GGATG 1 cut(s) 79
BseLI CCNNNNNNNGG 1 cut(s) 362
BseMI GCAATG 1 cut(s) 654
BseMII CTCAG 3 cut(s) 186, 413, 731
BseRI GAGGAG 3 cut(s) 284, 546, 549
BseXI GCAGC 1 cut(s) 668
Bsh1285I CGRYCG 1 cut(s) 157
BsiEI CGRYCG 1 cut(s) 157
BsiHKCI CYCGRG 1 cut(s) 26
BslFI GGGAC 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 362
BsmAI GTCTC 5 cut(s) 175, 284, 620, 632, 720
BsmBI CGTCTC 1 cut(s) 620
BsmFI GGGAC 1 cut(s) 144
Bso31I GGTCTC 1 cut(s) 284
BsoBI CYCGRG 1 cut(s) 26
Bsp119I TTCGAA 1 cut(s) 734
Bsp143I GATC 5 cut(s) 128, 154, 212, 319, 444
BspACI CCGC 1 cut(s) 108
BspCNI CTCAG 3 cut(s) 185, 412, 730
BspHI TCATGA 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 446
BspPI GGATC 3 cut(s) 123, 439, 452
BspT104I TTCGAA 1 cut(s) 734
BspTI CTTAAG 1 cut(s) 269
BspTNI GGTCTC 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 654
BssMI GATC 5 cut(s) 128, 154, 212, 319, 444
Bst4CI ACNGT 4 cut(s) 137, 365, 565, 700
Bst6I CTCTTC 4 cut(s) 453, 504, 510, 677
BstAFI CTTAAG 1 cut(s) 269
BstBAI YACGTR 1 cut(s) 605
BstBI TTCGAA 1 cut(s) 734
BstDEI CTNAG 5 cut(s) 172, 399, 642, 717, 771
BstF5I GGATG 1 cut(s) 79
BstKTI GATC 5 cut(s) 131, 157, 215, 322, 447
BstMAI GTCTC 5 cut(s) 175, 284, 620, 632, 720
BstMBI GATC 5 cut(s) 128, 154, 212, 319, 444
BstMCI CGRYCG 1 cut(s) 157
BstMWI GCNNNNNNNGC 2 cut(s) 400, 653
BstSFI CTRYAG 1 cut(s) 208
BstSNI TACGTA 1 cut(s) 605
BstV1I GCAGC 1 cut(s) 668
BstV2I GAAGAC 3 cut(s) 68, 389, 677
BstX2I RGATCY 2 cut(s) 128, 444
BstYI RGATCY 2 cut(s) 128, 444
BtgZI GCGATG 1 cut(s) 322
BtsCI GGATG 1 cut(s) 79
CciI TCATGA 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 56
Csp6I GTAC 1 cut(s) 558
CviAII CATG 1 cut(s) 8
CviJI RGCY 9 cut(s) 25, 46, 70, 121, 178, 274, 403, 616, 622
CviKI_1 RGCY 9 cut(s) 25, 46, 70, 121, 178, 274, 403, 616, 622
CviQI GTAC 1 cut(s) 558
DdeI CTNAG 5 cut(s) 172, 399, 642, 717, 771
DpnI GATC 5 cut(s) 130, 156, 214, 321, 446
DpnII GATC 5 cut(s) 128, 154, 212, 319, 444
Eam1104I CTCTTC 4 cut(s) 453, 504, 510, 677
EarI CTCTTC 4 cut(s) 453, 504, 510, 677
EciI GGCGGA 1 cut(s) 123
Eco105I TACGTA 1 cut(s) 605
Eco31I GGTCTC 1 cut(s) 284
Eco47I GGWCC 1 cut(s) 56
Eco57I CTGAAG 1 cut(s) 477
Eco88I CYCGRG 1 cut(s) 26
EcoO109I RGGNCCY 1 cut(s) 56
Esp3I CGTCTC 1 cut(s) 620
FaeI CATG 1 cut(s) 11
FaiI YATR 4 cut(s) 9, 413, 585, 785
FaqI GGGAC 1 cut(s) 144
FatI CATG 1 cut(s) 7
FblI GTMKAC 2 cut(s) 34, 150
Fnu4HI GCNGC 1 cut(s) 657
FokI GGATG 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 657
FspBI CTAG 1 cut(s) 275
GluI GCNGC 1 cut(s) 657
Hin1II CATG 1 cut(s) 11
HindIII AAGCTT 1 cut(s) 620
HinfI GANTC 4 cut(s) 31, 114, 385, 725
HphI GGTGA 3 cut(s) 325, 388, 577
Hpy166II GTNNAC 6 cut(s) 35, 151, 505, 602, 696, 743
Hpy188III TCNNGA 3 cut(s) 8, 28, 313
Hpy8I GTNNAC 6 cut(s) 35, 151, 505, 602, 696, 743
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 5 cut(s) 69, 479, 521, 533, 539
HpyCH4III ACNGT 4 cut(s) 137, 365, 565, 700
HpyCH4IV ACGT 1 cut(s) 604
HpyF10VI GCNNNNNNNGC 2 cut(s) 400, 653
HpyF3I CTNAG 5 cut(s) 172, 399, 642, 717, 771
HpySE526I ACGT 1 cut(s) 604
Hsp92II CATG 1 cut(s) 11
Kzo9I GATC 5 cut(s) 128, 154, 212, 319, 444
LpnPI CCDG 3 cut(s) 102, 112, 258
Lsp1109I GCAGC 1 cut(s) 668
MaeI CTAG 1 cut(s) 275
MaeII ACGT 1 cut(s) 604
MalI GATC 5 cut(s) 130, 156, 214, 321, 446
MboI GATC 5 cut(s) 128, 154, 212, 319, 444
MfeI CAATTG 1 cut(s) 590
MflI RGATCY 2 cut(s) 128, 444
MluCI AATT 1 cut(s) 590
MlyI GAGTC 2 cut(s) 40, 379
MmeI TCCRAC 2 cut(s) 156, 450
MseI TTAA 3 cut(s) 270, 348, 440
MspCI CTTAAG 1 cut(s) 269
MunI CAATTG 1 cut(s) 590
MwoI GCNNNNNNNGC 2 cut(s) 400, 653
NdeII GATC 5 cut(s) 128, 154, 212, 319, 444
NlaIII CATG 1 cut(s) 11
NlaIV GGNNCC 1 cut(s) 446
NspV TTCGAA 1 cut(s) 734
PagI TCATGA 1 cut(s) 7
PcsI WCGNNNNNNNCGW 3 cut(s) 91, 129, 159
PfeI GAWTC 2 cut(s) 114, 725
PkrI GCNGC 1 cut(s) 658
Ple19I CGATCG 1 cut(s) 157
PleI GAGTC 2 cut(s) 39, 379
PpsI GAGTC 2 cut(s) 39, 379
Ppu21I YACGTR 1 cut(s) 605
PpuMI RGGWCCY 1 cut(s) 56
Psp5II RGGWCCY 1 cut(s) 56
PspN4I GGNNCC 1 cut(s) 446
PspPI GGNCC 1 cut(s) 56
PspPPI RGGWCCY 1 cut(s) 56
PsuI RGATCY 2 cut(s) 128, 444
PvuI CGATCG 1 cut(s) 157
RsaI GTAC 1 cut(s) 559
RsaNI GTAC 1 cut(s) 558
SaqAI TTAA 3 cut(s) 270, 348, 440
SatI GCNGC 1 cut(s) 657
Sau3AI GATC 5 cut(s) 128, 154, 212, 319, 444
Sau96I GGNCC 1 cut(s) 56
SchI GAGTC 2 cut(s) 40, 379
SfcI CTRYAG 1 cut(s) 208
SfuI TTCGAA 1 cut(s) 734
SinI GGWCC 1 cut(s) 56
SmlI CTYRAG 2 cut(s) 269, 623
SmoI CTYRAG 2 cut(s) 269, 623
SnaBI TACGTA 1 cut(s) 605
Sse9I AATT 1 cut(s) 590
SsiI CCGC 1 cut(s) 108
SspMI CTAG 1 cut(s) 275
TaaI ACNGT 4 cut(s) 137, 365, 565, 700
TaiI ACGT 1 cut(s) 607
TaqI TCGA 2 cut(s) 85, 734
TaqII GACCGA 1 cut(s) 108
TasI AATT 1 cut(s) 590
TatI WGTACW 1 cut(s) 557
TfiI GAWTC 2 cut(s) 114, 725
Tru1I TTAA 3 cut(s) 270, 348, 440
Tru9I TTAA 3 cut(s) 270, 348, 440
TseI GCWGC 1 cut(s) 656
TspDTI ATGAA 3 cut(s) 68, 665, 719
TspGWI ACGGA 1 cut(s) 437
Vha464I CTTAAG 1 cut(s) 269
VpaK11BI GGWCC 1 cut(s) 56
XmiI GTMKAC 2 cut(s) 34, 150
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.