AT1G29040

Conserved hypothetical protein (Lin0512_fam)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007945
Physical Location & Seq
Forward (+)
10133983 .. 10136124
2142 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G29040.1

Sequence Viewer

Length: 597 bp
ATGTCTCTTTCGTTGATTTCTGGTTCGATTCATATCTGCGCTGAGCTTCGTCTCCGTCAATCTCCGTCGTGTTTAACAATCTCTTCTTCGCGGCCAAAATTTCTCTCTTCCCGTAGTAAGCAGTTCTCTCTCGACCATTTTCCTCAGATCTCACGTCCGATCAAAGTCATCGCGAGAAGCGCCATGGAGACGACGGCGGAGACAATTACCGGCGGTGTTCCCAACAACACGATGAAGTTATTGTTCGTTGAGATGGGTGTCGGTTACGATCAGCACGGGCAAGATGTGACATCTGCGGCGATGAAGGCTTGTAAGAATGCAATTTCTTCGAATTCGATTCCTGCTTTTAGGAGGGGTTCGATTCCTGGAGTTTCATTTGGAGAAATGAAGTTGCAGATTAAGCTTGGAGTGCCTCATTCTCTTCACCAGCAGCTGGATTTGGACAAGGTTAAGTCTATCTTCCCATATGGGAAGATTGTGAATGTAGAGGTGGTGGATGGAGGACTGATTTGCTCAAGCGGTGTTCTAGTCGAAGAAATGGGTGATACAAATGAAGATTGCTACATAGTGAATGTCGCAGTCTATGTCGGTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lin0512_fam

Protein Analysis

198

Amino Acids

21.44

Weight (kDa)

8.27

Isoelectric Point (pI)

47.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lin0512_fam PF09585 81 - 196 9.5e-37 Conserved hypothetical protein (Lin0512_fam)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 433
AccII CGCG 2 cut(s) 91, 173
AciI CCGC 5 cut(s) 91, 197, 213, 296, 519
AcoI YGGCCR 1 cut(s) 92
AcsI RAATTY 2 cut(s) 98, 331
AfiI CCNNNNNNNGG 1 cut(s) 433
AjiI CACGTC 1 cut(s) 155
AjnI CCWGG 1 cut(s) 364
AluBI AGCT 3 cut(s) 46, 403, 433
AluI AGCT 3 cut(s) 46, 403, 433
Alw26I GTCTC 4 cut(s) 9, 56, 182, 194
AlwNI CAGNNNCTG 1 cut(s) 433
AoxI GGCC 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 430
ApoI RAATTY 2 cut(s) 98, 331
AspLEI GCGC 2 cut(s) 41, 182
AsuHPI GGTGA 2 cut(s) 416, 554
AsuII TTCGAA 1 cut(s) 329
BbvI GCAGC 1 cut(s) 442
BccI CCATC 2 cut(s) 247, 491
BceAI ACGGC 1 cut(s) 210
BcgI CGANNNNNNTGC 2 cut(s) 309, 343
BciT130I CCWGG 1 cut(s) 366
BcoDI GTCTC 4 cut(s) 9, 56, 182, 194
BfaI CTAG 2 cut(s) 527, 595
BfoI RGCGCY 1 cut(s) 183
BglII AGATCT 1 cut(s) 147
BisI GCNGC 3 cut(s) 92, 297, 431
BlpI GCTNAGC 1 cut(s) 42
BlsI GCNGC 3 cut(s) 93, 298, 432
Bme1390I CCNGG 1 cut(s) 366
BmgBI CACGTC 1 cut(s) 155
BmrFI CCNGG 1 cut(s) 366
BpmI CTGGAG 1 cut(s) 387
Bpu1102I GCTNAGC 1 cut(s) 42
Bpu14I TTCGAA 1 cut(s) 329
BpuEI CTTGAG 1 cut(s) 499
BsaBI GATNNNNATC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 183
Bsc4I CCNNNNNNNGG 1 cut(s) 433
Bse118I RCCGGY 1 cut(s) 209
Bse8I GATNNNNATC 1 cut(s) 32
BseBI CCWGG 1 cut(s) 366
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 1 cut(s) 502
BseJI GATNNNNATC 1 cut(s) 32
BseLI CCNNNNNNNGG 1 cut(s) 433
BseMII CTCAG 2 cut(s) 33, 158
BseXI GCAGC 1 cut(s) 442
Bsh1236I CGCG 2 cut(s) 91, 173
BshFI GGCC 1 cut(s) 94
BsiSI CCGG 1 cut(s) 210
BslI CCNNNNNNNGG 1 cut(s) 433
BsmAI GTCTC 4 cut(s) 9, 56, 182, 194
BsmBI CGTCTC 2 cut(s) 56, 182
BsmI GAATGC 1 cut(s) 322
BsnI GGCC 1 cut(s) 94
Bsp119I TTCGAA 1 cut(s) 329
Bsp143I GATC 3 cut(s) 147, 159, 268
Bsp1720I GCTNAGC 1 cut(s) 42
Bsp19I CCATGG 1 cut(s) 183
Bsp68I TCGCGA 1 cut(s) 173
BspACI CCGC 5 cut(s) 91, 197, 213, 296, 519
BspANI GGCC 1 cut(s) 94
BspCNI CTCAG 2 cut(s) 34, 157
BspFNI CGCG 2 cut(s) 91, 173
BspT104I TTCGAA 1 cut(s) 329
BsrFI RCCGGY 1 cut(s) 209
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 3 cut(s) 147, 159, 268
BssT1I CCWWGG 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 366
Bst6I CTCTTC 3 cut(s) 88, 112, 426
BstBI TTCGAA 1 cut(s) 329
BstDEI CTNAG 2 cut(s) 42, 144
BstDSI CCRYGG 1 cut(s) 183
BstF5I GGATG 1 cut(s) 502
BstFNI CGCG 2 cut(s) 91, 173
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 2 cut(s) 41, 182
BstKTI GATC 3 cut(s) 150, 162, 271
BstMAI GTCTC 4 cut(s) 9, 56, 182, 194
BstMBI GATC 3 cut(s) 147, 159, 268
BstMWI GCNNNNNNNGC 4 cut(s) 179, 305, 400, 409
BstNI CCWGG 1 cut(s) 366
BstSCI CCNGG 1 cut(s) 364
BstUI CGCG 2 cut(s) 91, 173
BstV1I GCAGC 1 cut(s) 442
BstX2I RGATCY 1 cut(s) 147
BstYI RGATCY 1 cut(s) 147
BsuRI GGCC 1 cut(s) 94
BtgI CCRYGG 1 cut(s) 183
BtgZI GCGATG 2 cut(s) 154, 314
BtrI CACGTC 1 cut(s) 155
BtsCI GGATG 1 cut(s) 502
BtuMI TCGCGA 1 cut(s) 173
CaiI CAGNNNCTG 1 cut(s) 433
CfoI GCGC 2 cut(s) 41, 182
Cfr10I RCCGGY 1 cut(s) 209
CviAII CATG 1 cut(s) 184
CviJI RGCY 5 cut(s) 46, 94, 308, 403, 433
CviKI_1 RGCY 5 cut(s) 46, 94, 308, 403, 433
DdeI CTNAG 2 cut(s) 42, 144
DpnI GATC 3 cut(s) 149, 161, 270
DpnII GATC 3 cut(s) 147, 159, 268
EaeI YGGCCR 1 cut(s) 92
Eam1104I CTCTTC 3 cut(s) 88, 112, 426
EarI CTCTTC 3 cut(s) 88, 112, 426
EciI GGCGGA 1 cut(s) 212
Eco130I CCWWGG 1 cut(s) 183
EcoRI GAATTC 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
Esp3I CGTCTC 2 cut(s) 56, 182
FaeI CATG 1 cut(s) 187
FaiI YATR 6 cut(s) 33, 185, 466, 468, 566, 585
FalI AAGNNNNNCTT 2 cut(s) 443, 475
FatI CATG 1 cut(s) 183
FauNDI CATATG 1 cut(s) 466
Fnu4HI GCNGC 3 cut(s) 92, 297, 431
FokI GGATG 1 cut(s) 509
Fsp4HI GCNGC 3 cut(s) 92, 297, 431
FspBI CTAG 2 cut(s) 527, 595
GlaI GCGC 2 cut(s) 40, 181
GluI GCNGC 3 cut(s) 92, 297, 431
GsuI CTGGAG 1 cut(s) 387
HaeII RGCGCY 1 cut(s) 183
HaeIII GGCC 1 cut(s) 94
HapII CCGG 1 cut(s) 210
HhaI GCGC 2 cut(s) 41, 182
Hin1II CATG 1 cut(s) 187
Hin6I GCGC 2 cut(s) 39, 180
HinP1I GCGC 2 cut(s) 39, 180
HindIII AAGCTT 1 cut(s) 401
HinfI GANTC 3 cut(s) 28, 337, 361
HpaII CCGG 1 cut(s) 210
HphI GGTGA 2 cut(s) 416, 554
Hpy188I TCNGA 2 cut(s) 147, 159
Hpy188III TCNNGA 2 cut(s) 131, 172
Hpy99I CGWCG 2 cut(s) 70, 196
HpyAV CCTTC 1 cut(s) 298
HpyCH4IV ACGT 1 cut(s) 154
HpyCH4V TGCA 2 cut(s) 320, 394
HpyF10VI GCNNNNNNNGC 4 cut(s) 179, 305, 400, 409
HpyF3I CTNAG 2 cut(s) 42, 144
HpySE526I ACGT 1 cut(s) 154
Hsp92II CATG 1 cut(s) 187
HspAI GCGC 2 cut(s) 39, 180
Kzo9I GATC 3 cut(s) 147, 159, 268
LpnPI CCDG 7 cut(s) 6, 223, 351, 354, 378, 419, 440
Lsp1109I GCAGC 1 cut(s) 442
MaeI CTAG 2 cut(s) 527, 595
MaeII ACGT 1 cut(s) 154
MaeIII GTNAC 3 cut(s) 263, 286, 590
MalI GATC 3 cut(s) 149, 161, 270
MboI GATC 3 cut(s) 147, 159, 268
MboII GAAGA 9 cut(s) 75, 78, 99, 318, 413, 451, 484, 545, 566
MflI RGATCY 1 cut(s) 147
MluCI AATT 4 cut(s) 98, 204, 321, 331
MnlI CCTC 5 cut(s) 153, 345, 423, 481, 494
MseI TTAA 3 cut(s) 74, 399, 450
MspA1I CMGCKG 1 cut(s) 433
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 1 cut(s) 366
Mva1269I GAATGC 1 cut(s) 322
MvaI CCWGG 1 cut(s) 366
MvnI CGCG 2 cut(s) 91, 173
MwoI GCNNNNNNNGC 4 cut(s) 179, 305, 400, 409
NcoI CCATGG 1 cut(s) 183
NdeI CATATG 1 cut(s) 466
NdeII GATC 3 cut(s) 147, 159, 268
NlaIII CATG 1 cut(s) 187
NmuCI GTSAC 1 cut(s) 286
NruI TCGCGA 1 cut(s) 173
NspV TTCGAA 1 cut(s) 329
PctI GAATGC 1 cut(s) 322
PfeI GAWTC 3 cut(s) 28, 337, 361
PflMI CCANNNNNTGG 1 cut(s) 433
PfoI TCCNGGA 1 cut(s) 364
PkrI GCNGC 3 cut(s) 93, 298, 432
Psp6I CCWGG 1 cut(s) 364
PspGI CCWGG 1 cut(s) 364
PstNI CAGNNNCTG 1 cut(s) 433
PsuI RGATCY 1 cut(s) 147
PvuII CAGCTG 1 cut(s) 433
RruI TCGCGA 1 cut(s) 173
SaqAI TTAA 3 cut(s) 74, 399, 450
SatI GCNGC 3 cut(s) 92, 297, 431
Sau3AI GATC 3 cut(s) 147, 159, 268
ScrFI CCNGG 1 cut(s) 366
SetI ASST 6 cut(s) 48, 157, 405, 435, 450, 492
SfuI TTCGAA 1 cut(s) 329
SmlI CTYRAG 1 cut(s) 514
SmoI CTYRAG 1 cut(s) 514
Sse9I AATT 4 cut(s) 98, 204, 321, 331
SsiI CCGC 5 cut(s) 91, 197, 213, 296, 519
SspMI CTAG 2 cut(s) 527, 595
StyD4I CCNGG 1 cut(s) 364
StyI CCWWGG 1 cut(s) 183
TaiI ACGT 1 cut(s) 157
TaqI TCGA 6 cut(s) 26, 132, 329, 335, 359, 531
TasI AATT 4 cut(s) 98, 204, 321, 331
TauI GCSGC 2 cut(s) 94, 299
TfiI GAWTC 3 cut(s) 28, 337, 361
Tru1I TTAA 3 cut(s) 74, 399, 450
Tru9I TTAA 3 cut(s) 74, 399, 450
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 1 cut(s) 430
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 6 cut(s) 20, 248, 317, 363, 401, 567
TspGWI ACGGA 2 cut(s) 44, 54
Van91I CCANNNNNTGG 1 cut(s) 433
XapI RAATTY 2 cut(s) 98, 331
XspI CTAG 2 cut(s) 527, 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.