Rh7BG024200

Conserved hypothetical protein (Lin0512_fam)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0007945
Physical Location & Seq
Reverse (-)
1681421 .. 1683525
2105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG024200.1

Sequence Viewer

Length: 288 bp
ATGGAAGCCCAGAAAAGTGAGACCAGCGGCTCAGCTCAACCTATGAAGCTCTTGTTCGTGGAGATGGGTGTGGGCTACGACCAACATGGGCAAGATGTTACGTCCGCAGCAATGCGGGCTTGTAGAGATGCCATCACTTCCAATTCGATCCCTGCTTTTCGAAGAGCTCCCGCCAACAACACCATACTTGACACAAAGACACCGGACACAATGAGTAAGAGAGGAGAAAAGAAGACGATGACAATTCTCTTCGCACGACACCCACTACGAACGCATAAGGGTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lin0512_fam

Protein Analysis

95

Amino Acids

10.44

Weight (kDa)

9.8

Isoelectric Point (pI)

39.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lin0512_fam PF09585 18 - 56 9.7e-15 Conserved hypothetical protein (Lin0512_fam)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 27, 105, 115, 171
AclWI GGATC 1 cut(s) 142
AluBI AGCT 3 cut(s) 35, 49, 167
AluI AGCT 3 cut(s) 35, 49, 167
Alw21I GWGCWC 1 cut(s) 169
Alw26I GTCTC 1 cut(s) 14
AlwI GGATC 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 107
AsuII TTCGAA 1 cut(s) 160
BanII GRGCYC 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 239
Bbv12I GWGCWC 1 cut(s) 169
BbvI GCAGC 1 cut(s) 119
BccI CCATC 2 cut(s) 58, 140
BcoDI GTCTC 1 cut(s) 14
BisI GCNGC 2 cut(s) 28, 108
BlpI GCTNAGC 1 cut(s) 31
BlsI GCNGC 2 cut(s) 29, 109
BmsI GCATC 1 cut(s) 118
BpiI GAAGAC 1 cut(s) 239
Bpu1102I GCTNAGC 1 cut(s) 31
Bpu14I TTCGAA 1 cut(s) 160
BsaI GGTCTC 1 cut(s) 14
BsaWI WCCGGW 1 cut(s) 202
Bse3DI GCAATG 1 cut(s) 117
BseMI GCAATG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 45
BseRI GAGGAG 1 cut(s) 237
BseXI GCAGC 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 169
BsiSI CCGG 1 cut(s) 203
BsmAI GTCTC 1 cut(s) 14
Bso31I GGTCTC 1 cut(s) 14
Bsp119I TTCGAA 1 cut(s) 160
Bsp1286I GDGCHC 1 cut(s) 169
Bsp143I GATC 1 cut(s) 147
Bsp1720I GCTNAGC 1 cut(s) 31
BspACI CCGC 4 cut(s) 27, 105, 115, 171
BspCNI CTCAG 1 cut(s) 44
BspPI GGATC 1 cut(s) 142
BspQI GCTCTTC 1 cut(s) 157
BspT104I TTCGAA 1 cut(s) 160
BspTNI GGTCTC 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 117
BssMI GATC 1 cut(s) 147
Bst6I CTCTTC 2 cut(s) 157, 254
BstBI TTCGAA 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 31
BstKTI GATC 1 cut(s) 150
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 1 cut(s) 147
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 119
BstV2I GAAGAC 1 cut(s) 239
Cac8I GCNNGC 1 cut(s) 117
CviAII CATG 1 cut(s) 86
CviJI RGCY 7 cut(s) 8, 30, 35, 49, 75, 119, 167
CviKI_1 RGCY 7 cut(s) 8, 30, 35, 49, 75, 119, 167
DdeI CTNAG 1 cut(s) 31
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
Eam1104I CTCTTC 2 cut(s) 157, 254
EarI CTCTTC 2 cut(s) 157, 254
Ecl136II GAGCTC 1 cut(s) 167
Eco24I GRGCYC 1 cut(s) 169
Eco31I GGTCTC 1 cut(s) 14
Eco53kI GAGCTC 1 cut(s) 167
EcoICRI GAGCTC 1 cut(s) 167
EcoT38I GRGCYC 1 cut(s) 169
FaeI CATG 1 cut(s) 89
FaiI YATR 4 cut(s) 44, 87, 185, 276
FatI CATG 1 cut(s) 85
FauI CCCGC 2 cut(s) 108, 178
Fnu4HI GCNGC 2 cut(s) 28, 108
FriOI GRGCYC 1 cut(s) 169
Fsp4HI GCNGC 2 cut(s) 28, 108
GluI GCNGC 2 cut(s) 28, 108
HapII CCGG 1 cut(s) 203
Hin1II CATG 1 cut(s) 89
HpaII CCGG 1 cut(s) 203
Hpy188I TCNGA 1 cut(s) 287
HpyCH4IV ACGT 1 cut(s) 101
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpyF3I CTNAG 1 cut(s) 31
HpySE526I ACGT 1 cut(s) 101
Hsp92II CATG 1 cut(s) 89
Kzo9I GATC 1 cut(s) 147
LguI GCTCTTC 1 cut(s) 157
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 4 cut(s) 23, 37, 165, 216
Lsp1109I GCAGC 1 cut(s) 119
LweI GCATC 1 cut(s) 118
MaeII ACGT 1 cut(s) 101
MaeIII GTNAC 1 cut(s) 97
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 3 cut(s) 174, 241, 244
MhlI GDGCHC 1 cut(s) 169
MluCI AATT 2 cut(s) 142, 243
MnlI CCTC 1 cut(s) 215
MslI CAYNNNNRTG 1 cut(s) 279
MspA1I CMGCKG 1 cut(s) 27
MspI CCGG 1 cut(s) 203
MwoI GCNNNNNNNGC 1 cut(s) 116
NdeII GATC 1 cut(s) 147
NlaIII CATG 1 cut(s) 89
NspV TTCGAA 1 cut(s) 160
PciSI GCTCTTC 1 cut(s) 157
PkrI GCNGC 2 cut(s) 29, 109
Psp124BI GAGCTC 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 279
SacI GAGCTC 1 cut(s) 169
SapI GCTCTTC 1 cut(s) 157
SatI GCNGC 2 cut(s) 28, 108
Sau3AI GATC 1 cut(s) 147
SduI GDGCHC 1 cut(s) 169
SetI ASST 5 cut(s) 37, 43, 51, 104, 169
SfaNI GCATC 1 cut(s) 118
SfuI TTCGAA 1 cut(s) 160
SmiMI CAYNNNNRTG 1 cut(s) 279
Sse9I AATT 2 cut(s) 142, 243
SsiI CCGC 4 cut(s) 27, 105, 115, 171
SstI GAGCTC 1 cut(s) 169
TaiI ACGT 1 cut(s) 104
TaqI TCGA 2 cut(s) 146, 160
TasI AATT 2 cut(s) 142, 243
TauI GCSGC 1 cut(s) 30
TseI GCWGC 1 cut(s) 107
TspDTI ATGAA 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.