Rh5DG076900

Conserved hypothetical protein (Lin0512_fam)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0007945
Physical Location & Seq
Forward (+)
6695360 .. 6697091
1732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG076900.1

Sequence Viewer

Length: 408 bp
ATGGAAGCCCAGAAAAGTGAGACCAGCGGCTCAGCTCAACCTATGAAGCTCTTGTTCGTGGAGATGGGTGTGGGCTATGACCAACATGGGCAAGATGTTACGTCCGCAGCAATGCGGGCTTGTAGAGATGCCATCACTTCCAATTCGATCCCTGCTTTTCGAAGAGGGTCAATACCTGGAGTTACATTTGAGGAGATGAAACTACAGATCAAGCTGGGAGTGCCTCATATACTACAACAGTCGCTCGATGTCGAGAAGGTCAAATCAGTCTTTCCATATGGAAAGATTTTGAATGTTGAAGTTGTTGATGGTGGACTGATATGCTCAAGTGGTGTGGTTGTAGAAGATATGGGAGATAAGAATGATGACTGTTATATTGTGAATGCAGCAGTTTATATTGGTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lin0512_fam

Protein Analysis

135

Amino Acids

14.6

Weight (kDa)

4.91

Isoelectric Point (pI)

36.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lin0512_fam PF09585 18 - 132 3.5e-39 Conserved hypothetical protein (Lin0512_fam)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 27, 105, 115
AclWI GGATC 1 cut(s) 142
AgsI TTSAA 2 cut(s) 292, 299
AjnI CCWGG 1 cut(s) 175
AluBI AGCT 3 cut(s) 35, 49, 214
AluI AGCT 3 cut(s) 35, 49, 214
Alw26I GTCTC 1 cut(s) 14
AlwI GGATC 1 cut(s) 142
ApeKI GCWGC 2 cut(s) 107, 386
AsuII TTCGAA 1 cut(s) 160
BbvI GCAGC 2 cut(s) 119, 398
BccI CCATC 3 cut(s) 58, 140, 302
BciT130I CCWGG 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 14
BfaI CTAG 1 cut(s) 406
BfmI CTRYAG 1 cut(s) 203
BisI GCNGC 3 cut(s) 28, 108, 387
BlpI GCTNAGC 1 cut(s) 31
BlsI GCNGC 3 cut(s) 29, 109, 388
Bme1390I CCNGG 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 177
BmsI GCATC 1 cut(s) 118
BpmI CTGGAG 1 cut(s) 198
Bpu1102I GCTNAGC 1 cut(s) 31
Bpu14I TTCGAA 1 cut(s) 160
BpuEI CTTGAG 1 cut(s) 310
BsaI GGTCTC 1 cut(s) 14
Bse3DI GCAATG 1 cut(s) 117
BseBI CCWGG 1 cut(s) 177
BseMI GCAATG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 45
BseRI GAGGAG 1 cut(s) 206
BseXI GCAGC 2 cut(s) 119, 398
BseYI CCCAGC 1 cut(s) 214
BsmAI GTCTC 1 cut(s) 14
BsmI GAATGC 1 cut(s) 388
Bso31I GGTCTC 1 cut(s) 14
Bsp119I TTCGAA 1 cut(s) 160
Bsp143I GATC 2 cut(s) 147, 207
Bsp1720I GCTNAGC 1 cut(s) 31
BspACI CCGC 3 cut(s) 27, 105, 115
BspCNI CTCAG 1 cut(s) 44
BspPI GGATC 1 cut(s) 142
BspT104I TTCGAA 1 cut(s) 160
BspTNI GGTCTC 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 117
BssMI GATC 2 cut(s) 147, 207
Bst2UI CCWGG 1 cut(s) 177
Bst4CI ACNGT 2 cut(s) 240, 371
Bst6I CTCTTC 1 cut(s) 157
BstBI TTCGAA 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 31
BstKTI GATC 2 cut(s) 150, 210
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 2 cut(s) 147, 207
BstMWI GCNNNNNNNGC 2 cut(s) 116, 220
BstNI CCWGG 1 cut(s) 177
BstSCI CCNGG 1 cut(s) 175
BstSFI CTRYAG 1 cut(s) 203
BstV1I GCAGC 2 cut(s) 119, 398
Cac8I GCNNGC 1 cut(s) 117
CspCI CAANNNNNGTGG 2 cut(s) 315, 350
CviAII CATG 1 cut(s) 86
CviJI RGCY 7 cut(s) 8, 30, 35, 49, 75, 119, 214
CviKI_1 RGCY 7 cut(s) 8, 30, 35, 49, 75, 119, 214
DdeI CTNAG 1 cut(s) 31
DpnI GATC 2 cut(s) 149, 209
DpnII GATC 2 cut(s) 147, 207
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
Eco31I GGTCTC 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 175
FaeI CATG 1 cut(s) 89
FatI CATG 1 cut(s) 85
FauI CCCGC 1 cut(s) 108
FauNDI CATATG 1 cut(s) 277
Fnu4HI GCNGC 3 cut(s) 28, 108, 387
Fsp4HI GCNGC 3 cut(s) 28, 108, 387
FspBI CTAG 1 cut(s) 406
GluI GCNGC 3 cut(s) 28, 108, 387
GsaI CCCAGC 1 cut(s) 218
GsuI CTGGAG 1 cut(s) 198
Hin1II CATG 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 314
Hpy188III TCNNGA 1 cut(s) 253
Hpy8I GTNNAC 1 cut(s) 314
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 2 cut(s) 240, 371
HpyCH4IV ACGT 1 cut(s) 101
HpyCH4V TGCA 1 cut(s) 386
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 220
HpyF3I CTNAG 1 cut(s) 31
HpySE526I ACGT 1 cut(s) 101
Hsp92II CATG 1 cut(s) 89
Kzo9I GATC 2 cut(s) 147, 207
LpnPI CCDG 6 cut(s) 23, 37, 162, 165, 189, 200
Lsp1109I GCAGC 2 cut(s) 119, 398
LweI GCATC 1 cut(s) 118
MaeI CTAG 1 cut(s) 406
MaeII ACGT 1 cut(s) 101
MaeIII GTNAC 3 cut(s) 97, 181, 401
MalI GATC 2 cut(s) 149, 209
MboI GATC 2 cut(s) 147, 207
MboII GAAGA 2 cut(s) 174, 356
MluCI AATT 1 cut(s) 142
MnlI CCTC 3 cut(s) 158, 184, 234
MspA1I CMGCKG 1 cut(s) 27
MspR9I CCNGG 1 cut(s) 177
Mva1269I GAATGC 1 cut(s) 388
MvaI CCWGG 1 cut(s) 177
MwoI GCNNNNNNNGC 2 cut(s) 116, 220
NdeI CATATG 1 cut(s) 277
NdeII GATC 2 cut(s) 147, 207
NlaIII CATG 1 cut(s) 89
NspV TTCGAA 1 cut(s) 160
PctI GAATGC 1 cut(s) 388
PkrI GCNGC 3 cut(s) 29, 109, 388
Psp6I CCWGG 1 cut(s) 175
PspFI CCCAGC 1 cut(s) 214
PspGI CCWGG 1 cut(s) 175
SatI GCNGC 3 cut(s) 28, 108, 387
Sau3AI GATC 2 cut(s) 147, 207
ScrFI CCNGG 1 cut(s) 177
SetI ASST 7 cut(s) 37, 43, 51, 104, 178, 216, 261
SfaNI GCATC 1 cut(s) 118
SfcI CTRYAG 1 cut(s) 203
SfuI TTCGAA 1 cut(s) 160
SmlI CTYRAG 1 cut(s) 325
SmoI CTYRAG 1 cut(s) 325
Sse9I AATT 1 cut(s) 142
SsiI CCGC 3 cut(s) 27, 105, 115
SspMI CTAG 1 cut(s) 406
StyD4I CCNGG 1 cut(s) 175
TaaI ACNGT 2 cut(s) 240, 371
TaiI ACGT 1 cut(s) 104
TaqI TCGA 4 cut(s) 146, 160, 246, 252
TasI AATT 1 cut(s) 142
TauI GCSGC 1 cut(s) 30
TseI GCWGC 2 cut(s) 107, 386
TspDTI ATGAA 2 cut(s) 59, 212
XspI CTAG 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.