Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012578.1

Orthogroup ID

OG0007945

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3833

Gene Structure 3833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012578.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

atgcggcctgtccggcggcgcctccacgttgatcatggctccttgcctcatcgacgattggcgggtgttgccggacgggttcctgggatctgggggctctcggctttggcctctcttcatcgggctgggttgggaacgtctcttctctcctctcaagcggcgacgcaggtgtgggcaattggcgatcggcgacctgtggtggctcgggtgtggagcaggtggttagtggccagatcaggccagatcatggcggcggaactagggaaaaaaaagaagaagggccggtttgcccgtttgagacccattagtggtatctgggcaacgaaactattgttatctgggaaaagaaggaaaatgacggcctgcttgttcctaaatctgccagtttcttcttcatctgcttcctttacttctcaaactaataagaaaaacccagcagtttcttcacactcacttctcactctaatcccaacccaattccctcttcgaacccctcgattctcacgccaagtcagagccgcatcgattgccatggaagcccagaaaagtgagaccagcggctcagctcaacctatgaagctcttgttcgtggagatgggtgtgggctatgaccaacatgggcaagatgttacgtccgcggcaatgcgggcttgtagagatgccatcacttccaattcgatccctgcttttcgaagagggtcaatacctggagttacatttgaggagatgaaactacagatcaagctgggagtgcctcatatactacaacagtcgctcgatgtcgagaaggtcaaatcagtctttccatatggaaagattttgaatgttgaagttgttgatggtggactgatatgctcaagtggtgtggttgtagaagatatgggagataagaatgatgactgttacata

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lin0512_fam

Protein Analysis

303

Amino Acids

33.04

Weight (kDa)

10.73

Isoelectric Point (pI)

48.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29040 AT1G29040 AT1G29040 AT1G29040 AT1G29040
fragaria_vesca	FvH4_3g07991
malus_domestica	MD10G1282600.v1.1
prunus_persica	Prupe.4G059300_v2.0.a1
pyrus_communis	pycom10g23570
rosa_chinensis	RchiOBHm_Chr5g0010321
rosa_laevigata	RLG00000031737
rosa_multiflora	Rmu_sc0007816.1_g000001 Rmu_sc0012578.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065930
rosa_rugosa	Rorug04G0450100 Rorug05G0222000
rosa_samantha	Rh5AG081300 Rh5CG089500 Rh5DG076900 Rh7BG024200 Rh7BG282600 Rh7BG456500 Rh7CG471700
rosa_wichuraiana	Rw5G007530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	157, 207
Acc36I	ACCTGC	2 cut(s)	157, 207
AccB1I	GGYRCC	1 cut(s)	18
AccB7I	CCANNNNNTGG	1 cut(s)	247
AccII	CGCG	1 cut(s)	638
AclWI	GGATC	2 cut(s)	95, 673
AcoI	YGGCCR	1 cut(s)	228
AcyI	GRCGYC	1 cut(s)	19
AfiI	CCNNNNNNNGG	2 cut(s)	247, 308
AgsI	TTSAA	2 cut(s)	823, 830
AjnI	CCWGG	2 cut(s)	82, 706
AjuI	GAANNNNNNNTTGG	2 cut(s)	468, 500
AluBI	AGCT	3 cut(s)	566, 580, 745
AluI	AGCT	3 cut(s)	566, 580, 745
Alw26I	GTCTC	3 cut(s)	144, 292, 545
AlwI	GGATC	2 cut(s)	95, 673
Ama87I	CYCGRG	1 cut(s)	204
AoxI	GGCC	6 cut(s)	5, 108, 228, 238, 280, 360
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	280
AsuII	TTCGAA	2 cut(s)	487, 691
AvaI	CYCGRG	1 cut(s)	204
BalI	TGGCCA	1 cut(s)	230
BanI	GGYRCC	1 cut(s)	18
BanII	GRGCYC	1 cut(s)	99
BccI	CCATC	3 cut(s)	589, 671, 833
BceAI	ACGGC	1 cut(s)	375
BciT130I	CCWGG	2 cut(s)	84, 708
BclI	TGATCA	1 cut(s)	31
BcoDI	GTCTC	3 cut(s)	144, 292, 545
BfaI	CTAG	1 cut(s)	260
BfmI	CTRYAG	1 cut(s)	734
BfoI	RGCGCY	1 cut(s)	22
BfuAI	ACCTGC	2 cut(s)	157, 207
BglI	GCCNNNNNGGC	1 cut(s)	13
BisI	GCNGC	7 cut(s)	5, 17, 159, 252, 519, 559, 639
BlpI	GCTNAGC	1 cut(s)	562
BlsI	GCNGC	7 cut(s)	6, 18, 160, 253, 520, 560, 640
Bme1390I	CCNGG	2 cut(s)	84, 708
BmeT110I	CYCGRG	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	3 cut(s)	20, 40, 81
BmrFI	CCNGG	2 cut(s)	84, 708
BmsI	GCATC	2 cut(s)	530, 649
BpmI	CTGGAG	1 cut(s)	729
Bpu1102I	GCTNAGC	1 cut(s)	562
Bpu14I	TTCGAA	2 cut(s)	487, 691
BpuEI	CTTGAG	2 cut(s)	138, 841
Bsa29I	ATCGAT	1 cut(s)	524
BsaHI	GRCGYC	1 cut(s)	19
BsaI	GGTCTC	2 cut(s)	292, 545
BsaJI	CCNNGG	3 cut(s)	83, 531, 636
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 308
Bse118I	RCCGGY	1 cut(s)	282
Bse1I	ACTGG	1 cut(s)	383
Bse3DI	GCAATG	1 cut(s)	648
BseBI	CCWGG	2 cut(s)	84, 708
BseCI	ATCGAT	1 cut(s)	524
BseDI	CCNNGG	3 cut(s)	83, 531, 636
BseLI	CCNNNNNNNGG	2 cut(s)	247, 308
BseMI	GCAATG	1 cut(s)	648
BseMII	CTCAG	1 cut(s)	576
BseNI	ACTGG	1 cut(s)	383
BseRI	GAGGAG	2 cut(s)	139, 737
BseYI	CCCAGC	3 cut(s)	125, 433, 745
Bsh1236I	CGCG	1 cut(s)	638
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	6 cut(s)	7, 110, 230, 240, 282, 362
BshNI	GGYRCC	1 cut(s)	18
BshVI	ATCGAT	1 cut(s)	524
BsiEI	CGRYCG	1 cut(s)	187
BsiHKCI	CYCGRG	1 cut(s)	204
BsiSI	CCGG	3 cut(s)	13, 72, 283
BslI	CCNNNNNNNGG	2 cut(s)	247, 308
BsmAI	GTCTC	3 cut(s)	144, 292, 545
BsmBI	CGTCTC	1 cut(s)	144
BsnI	GGCC	6 cut(s)	7, 110, 230, 240, 282, 362
Bso31I	GGTCTC	2 cut(s)	292, 545
BsoBI	CYCGRG	1 cut(s)	204
Bsp119I	TTCGAA	2 cut(s)	487, 691
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	7 cut(s)	31, 87, 184, 233, 243, 678, 738
Bsp1720I	GCTNAGC	1 cut(s)	562
Bsp19I	CCATGG	1 cut(s)	531
BspANI	GGCC	6 cut(s)	7, 110, 230, 240, 282, 362
BspCNI	CTCAG	1 cut(s)	575
BspDI	ATCGAT	1 cut(s)	524
BspFNI	CGCG	1 cut(s)	638
BspLI	GGNNCC	3 cut(s)	20, 40, 81
BspMI	ACCTGC	2 cut(s)	157, 207
BspPI	GGATC	2 cut(s)	95, 673
BspT104I	TTCGAA	2 cut(s)	487, 691
BspT107I	GGYRCC	1 cut(s)	18
BspTNI	GGTCTC	2 cut(s)	292, 545
BsrDI	GCAATG	1 cut(s)	648
BsrFI	RCCGGY	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	383
BssAI	RCCGGY	1 cut(s)	282
BssECI	CCNNGG	3 cut(s)	83, 531, 636
BssMI	GATC	7 cut(s)	31, 87, 184, 233, 243, 678, 738
BssNI	GRCGYC	1 cut(s)	19
BssT1I	CCWWGG	1 cut(s)	531
Bst2UI	CCWGG	2 cut(s)	84, 708
Bst4CI	ACNGT	2 cut(s)	771, 902
Bst6I	CTCTTC	4 cut(s)	120, 147, 489, 688
BstACI	GRCGYC	1 cut(s)	19
BstAPI	GCANNNNNTGC	1 cut(s)	527
BstBI	TTCGAA	2 cut(s)	487, 691
BstC8I	GCNNGC	2 cut(s)	364, 648
BstDEI	CTNAG	1 cut(s)	562
BstDSI	CCRYGG	2 cut(s)	531, 636
BstFNI	CGCG	1 cut(s)	638
BstH2I	RGCGCY	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	7 cut(s)	34, 90, 187, 236, 246, 681, 741
BstMAI	GTCTC	3 cut(s)	144, 292, 545
BstMBI	GATC	7 cut(s)	31, 87, 184, 233, 243, 678, 738
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	6 cut(s)	13, 68, 527, 536, 647, 751
BstNI	CCWGG	2 cut(s)	84, 708
BstSCI	CCNGG	2 cut(s)	82, 706
BstSFI	CTRYAG	1 cut(s)	734
BstUI	CGCG	1 cut(s)	638
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
Bsu15I	ATCGAT	1 cut(s)	524
BsuRI	GGCC	6 cut(s)	7, 110, 230, 240, 282, 362
BsuTUI	ATCGAT	1 cut(s)	524
BtgI	CCRYGG	2 cut(s)	531, 636
BveI	ACCTGC	2 cut(s)	157, 207
Cac8I	GCNNGC	2 cut(s)	364, 648
CfoI	GCGC	1 cut(s)	21
Cfr10I	RCCGGY	1 cut(s)	282
Cfr13I	GGNCC	1 cut(s)	280
Cfr42I	CCGCGG	1 cut(s)	639
ClaI	ATCGAT	1 cut(s)	524
CseI	GACGC	1 cut(s)	172
CspCI	CAANNNNNGTGG	2 cut(s)	846, 881
CviAII	CATG	4 cut(s)	35, 247, 532, 617
DdeI	CTNAG	1 cut(s)	562
DinI	GGCGCC	1 cut(s)	20
DpnI	GATC	7 cut(s)	33, 89, 186, 235, 245, 680, 740
DpnII	GATC	7 cut(s)	31, 87, 184, 233, 243, 678, 738
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	4 cut(s)	120, 147, 489, 688
EarI	CTCTTC	4 cut(s)	120, 147, 489, 688
EciI	GGCGGA	1 cut(s)	269
Eco130I	CCWWGG	1 cut(s)	531
Eco24I	GRGCYC	1 cut(s)	99
Eco31I	GGTCTC	2 cut(s)	292, 545
Eco88I	CYCGRG	1 cut(s)	204
EcoRII	CCWGG	2 cut(s)	82, 706
EcoT14I	CCWWGG	1 cut(s)	531
EcoT38I	GRGCYC	1 cut(s)	99
EgeI	GGCGCC	1 cut(s)	20
EheI	GGCGCC	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	531
Esp3I	CGTCTC	1 cut(s)	144
FaeI	CATG	4 cut(s)	38, 250, 535, 620
FatI	CATG	4 cut(s)	34, 246, 531, 616
FauI	CCCGC	2 cut(s)	55, 639
FauNDI	CATATG	1 cut(s)	808
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	7 cut(s)	5, 17, 159, 252, 519, 559, 639
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	7 cut(s)	5, 17, 159, 252, 519, 559, 639
FspBI	CTAG	1 cut(s)	260
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	7 cut(s)	5, 17, 159, 252, 519, 559, 639
GsaI	CCCAGC	3 cut(s)	129, 437, 749
GsuI	CTGGAG	1 cut(s)	729
HaeII	RGCGCY	1 cut(s)	22
HaeIII	GGCC	6 cut(s)	7, 110, 230, 240, 282, 362
HapII	CCGG	3 cut(s)	13, 72, 283
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	1 cut(s)	21
Hin1I	GRCGYC	1 cut(s)	19
Hin1II	CATG	4 cut(s)	38, 250, 535, 620
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HinfI	GANTC	1 cut(s)	498
HpaII	CCGG	3 cut(s)	13, 72, 283
Hpy166II	GTNNAC	1 cut(s)	845
Hpy188I	TCNGA	1 cut(s)	515
Hpy188III	TCNNGA	1 cut(s)	784
Hpy8I	GTNNAC	1 cut(s)	845
Hpy99I	CGWCG	2 cut(s)	57, 166
HpyAV	CCTTC	3 cut(s)	271, 342, 781
HpyCH4III	ACNGT	2 cut(s)	771, 902
HpyCH4IV	ACGT	3 cut(s)	27, 137, 632
HpyF10VI	GCNNNNNNNGC	6 cut(s)	13, 68, 527, 536, 647, 751
HpyF3I	CTNAG	1 cut(s)	562
HpySE526I	ACGT	3 cut(s)	27, 137, 632
Hsp92I	GRCGYC	1 cut(s)	19
Hsp92II	CATG	4 cut(s)	38, 250, 535, 620
HspAI	GCGC	1 cut(s)	19
KasI	GGCGCC	1 cut(s)	18
Ksp22I	TGATCA	1 cut(s)	31
KspI	CCGCGG	1 cut(s)	639
Kzo9I	GATC	7 cut(s)	31, 87, 184, 233, 243, 678, 738
LmnI	GCTCC	2 cut(s)	44, 213
LweI	GCATC	2 cut(s)	530, 649
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	3 cut(s)	27, 137, 632
MaeIII	GTNAC	3 cut(s)	628, 712, 902
MalI	GATC	7 cut(s)	33, 89, 186, 235, 245, 680, 740
MboI	GATC	7 cut(s)	31, 87, 184, 233, 243, 678, 738
MboII	GAAGA	9 cut(s)	107, 134, 286, 381, 384, 435, 476, 705, 887
MfeI	CAATTG	1 cut(s)	177
MflI	RGATCY	1 cut(s)	87
MhlI	GDGCHC	1 cut(s)	99
MlsI	TGGCCA	1 cut(s)	230
MluCI	AATT	3 cut(s)	177, 476, 673
MluNI	TGGCCA	1 cut(s)	230
Mly113I	GGCGCC	1 cut(s)	19
MnlI	CCTC	9 cut(s)	32, 57, 121, 160, 492, 504, 689, 715, 765
Mox20I	TGGCCA	1 cut(s)	230
MscI	TGGCCA	1 cut(s)	230
Msp20I	TGGCCA	1 cut(s)	230
MspA1I	CMGCKG	2 cut(s)	558, 638
MspI	CCGG	3 cut(s)	13, 72, 283
MspR9I	CCNGG	2 cut(s)	84, 708
MunI	CAATTG	1 cut(s)	177
MvaI	CCWGG	2 cut(s)	84, 708
MvnI	CGCG	1 cut(s)	638
MwoI	GCNNNNNNNGC	6 cut(s)	13, 68, 527, 536, 647, 751
NarI	GGCGCC	1 cut(s)	19
NcoI	CCATGG	1 cut(s)	531
NdeI	CATATG	1 cut(s)	808
NdeII	GATC	7 cut(s)	31, 87, 184, 233, 243, 678, 738
NlaIII	CATG	4 cut(s)	38, 250, 535, 620
NlaIV	GGNNCC	3 cut(s)	20, 40, 81
NmeAIII	GCCGAG	1 cut(s)	80
NspV	TTCGAA	2 cut(s)	487, 691
PaqCI	CACCTGC	2 cut(s)	157, 207
PcsI	WCGNNNNNNNCGW	1 cut(s)	493
PfeI	GAWTC	1 cut(s)	498
PflMI	CCANNNNNTGG	1 cut(s)	247
PkrI	GCNGC	7 cut(s)	6, 18, 160, 253, 520, 560, 640
Ple19I	CGATCG	1 cut(s)	187
PluTI	GGCGCC	1 cut(s)	22
Psp6I	CCWGG	2 cut(s)	82, 706
PspFI	CCCAGC	3 cut(s)	125, 433, 745
PspGI	CCWGG	2 cut(s)	82, 706
PspN4I	GGNNCC	3 cut(s)	20, 40, 81
PspPI	GGNCC	1 cut(s)	280
PsuI	RGATCY	1 cut(s)	87
PvuI	CGATCG	1 cut(s)	187
SacII	CCGCGG	1 cut(s)	639
SatI	GCNGC	7 cut(s)	5, 17, 159, 252, 519, 559, 639
Sau3AI	GATC	7 cut(s)	31, 87, 184, 233, 243, 678, 738
Sau96I	GGNCC	1 cut(s)	280
ScrFI	CCNGG	2 cut(s)	84, 708
SduI	GDGCHC	1 cut(s)	99
SfaNI	GCATC	2 cut(s)	530, 649
SfcI	CTRYAG	1 cut(s)	734
SfoI	GGCGCC	1 cut(s)	20
Sfr303I	CCGCGG	1 cut(s)	639
SfuI	TTCGAA	2 cut(s)	487, 691
SgrBI	CCGCGG	1 cut(s)	639
SmlI	CTYRAG	2 cut(s)	153, 856
SmoI	CTYRAG	2 cut(s)	153, 856
Sse9I	AATT	3 cut(s)	177, 476, 673
SspDI	GGCGCC	1 cut(s)	18
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	2 cut(s)	82, 706
StyI	CCWWGG	1 cut(s)	531
TaaI	ACNGT	2 cut(s)	771, 902
TaiI	ACGT	3 cut(s)	30, 140, 635
TaqI	TCGA	8 cut(s)	52, 487, 496, 524, 677, 691, 777, 783
TasI	AATT	3 cut(s)	177, 476, 673
TauI	GCSGC	7 cut(s)	7, 19, 161, 254, 521, 561, 641
TfiI	GAWTC	1 cut(s)	498
TspDTI	ATGAA	4 cut(s)	107, 384, 590, 743
Van91I	CCANNNNNTGG	1 cut(s)	247
XcmI	CCANNNNNNNNNTGG	1 cut(s)	32
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.