Rw5G007530

Conserved hypothetical protein (Lin0512_fam)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0007945
Physical Location & Seq
Forward (+)
7959386 .. 7961300
1915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G007530.1

Sequence Viewer

Length: 585 bp
ATGACGGCCTGCTTGTTCCTAAATCTGCCAGTTTCTTCTTCATCTGCTTCCTTTACTTCTCAAACTAATAAGAAAAACCCAGCAGTTTCTTCACACTCACTTCTCACTCTAATCCCAACCCAATTCCCTCTTCGAACCCCTCGATTCTCACGCCAAGTCAGAGCCGCATCGACTGCCATGGAAGCCCAGAAAAGTGAGACCAGCGGCTCAGCTCAACCTATGAAGCTCTTGTTCGTGGAGATGGGTGTGGGCTATGACCAACATGGGCAAGATGTTACGTCCGCAGCAATGCGGGCTTGTAGAGATGCCATCACTTCCAATTCGATCCCTGCTTTTCGAAGAGGGTCAATACCTGGAGTTACATTTGAGGAGATGAAACTACAGATCAAGCTGGGAGTGCCTCATATACTACAACAGTCGCTTGATGTCGAGAAGGTCAAATCAGTCTTTCCATATGGAAAGATTTTGAATGTTGAAGTTGTTGATGGTGGACTGATATGCTCAAGTGGTGTGGTTGTAGAAGATATGGGAGATAAGAATGATGACTGTTATATAGTGAATGCAGCAGTTTATATTGGTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lin0512_fam

Protein Analysis

194

Amino Acids

20.95

Weight (kDa)

7.66

Isoelectric Point (pI)

41.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lin0512_fam PF09585 77 - 191 1.1e-38 Conserved hypothetical protein (Lin0512_fam)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 165, 204, 282, 292
AclWI GGATC 1 cut(s) 319
AgsI TTSAA 2 cut(s) 469, 476
AjnI CCWGG 1 cut(s) 352
AjuI GAANNNNNNNTTGG 2 cut(s) 114, 146
AluBI AGCT 3 cut(s) 212, 226, 391
AluI AGCT 3 cut(s) 212, 226, 391
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 1 cut(s) 319
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 2 cut(s) 284, 563
AsuII TTCGAA 2 cut(s) 133, 337
BbvI GCAGC 2 cut(s) 296, 575
BccI CCATC 3 cut(s) 235, 317, 479
BceAI ACGGC 1 cut(s) 21
BciT130I CCWGG 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 1 cut(s) 583
BfmI CTRYAG 1 cut(s) 380
BisI GCNGC 4 cut(s) 165, 205, 285, 564
BlpI GCTNAGC 1 cut(s) 208
BlsI GCNGC 4 cut(s) 166, 206, 286, 565
Bme1390I CCNGG 1 cut(s) 354
BmrFI CCNGG 1 cut(s) 354
BmsI GCATC 2 cut(s) 176, 295
BpmI CTGGAG 1 cut(s) 375
Bpu1102I GCTNAGC 1 cut(s) 208
Bpu14I TTCGAA 2 cut(s) 133, 337
BpuEI CTTGAG 1 cut(s) 487
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 29
Bse3DI GCAATG 1 cut(s) 294
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 177
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 29
BseRI GAGGAG 1 cut(s) 383
BseXI GCAGC 2 cut(s) 296, 575
BseYI CCCAGC 2 cut(s) 79, 391
BshFI GGCC 1 cut(s) 8
BsmAI GTCTC 1 cut(s) 191
BsmI GAATGC 1 cut(s) 565
BsnI GGCC 1 cut(s) 8
Bso31I GGTCTC 1 cut(s) 191
Bsp119I TTCGAA 2 cut(s) 133, 337
Bsp143I GATC 2 cut(s) 324, 384
Bsp1720I GCTNAGC 1 cut(s) 208
Bsp19I CCATGG 1 cut(s) 177
BspACI CCGC 4 cut(s) 165, 204, 282, 292
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 221
BspPI GGATC 1 cut(s) 319
BspT104I TTCGAA 2 cut(s) 133, 337
BspTNI GGTCTC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 294
BsrI ACTGG 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 2 cut(s) 324, 384
BssT1I CCWWGG 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 2 cut(s) 417, 548
Bst6I CTCTTC 2 cut(s) 135, 334
BstAPI GCANNNNNTGC 1 cut(s) 173
BstBI TTCGAA 2 cut(s) 133, 337
BstC8I GCNNGC 2 cut(s) 10, 294
BstDEI CTNAG 1 cut(s) 208
BstDSI CCRYGG 1 cut(s) 177
BstKTI GATC 2 cut(s) 327, 387
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 2 cut(s) 324, 384
BstMWI GCNNNNNNNGC 4 cut(s) 173, 182, 293, 397
BstNI CCWGG 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 352
BstSFI CTRYAG 1 cut(s) 380
BstV1I GCAGC 2 cut(s) 296, 575
BsuRI GGCC 1 cut(s) 8
BtgI CCRYGG 1 cut(s) 177
Cac8I GCNNGC 2 cut(s) 10, 294
CspCI CAANNNNNGTGG 2 cut(s) 492, 527
CviAII CATG 2 cut(s) 178, 263
CviJI RGCY 9 cut(s) 8, 164, 185, 207, 212, 226, 252, 296, 391
CviKI_1 RGCY 9 cut(s) 8, 164, 185, 207, 212, 226, 252, 296, 391
DdeI CTNAG 1 cut(s) 208
DpnI GATC 2 cut(s) 326, 386
DpnII GATC 2 cut(s) 324, 384
Eam1104I CTCTTC 2 cut(s) 135, 334
EarI CTCTTC 2 cut(s) 135, 334
Eco130I CCWWGG 1 cut(s) 177
Eco31I GGTCTC 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 2 cut(s) 181, 266
FatI CATG 2 cut(s) 177, 262
FauI CCCGC 1 cut(s) 285
FauNDI CATATG 1 cut(s) 454
Fnu4HI GCNGC 4 cut(s) 165, 205, 285, 564
Fsp4HI GCNGC 4 cut(s) 165, 205, 285, 564
FspBI CTAG 1 cut(s) 583
GluI GCNGC 4 cut(s) 165, 205, 285, 564
GsaI CCCAGC 2 cut(s) 83, 395
GsuI CTGGAG 1 cut(s) 375
HaeIII GGCC 1 cut(s) 8
Hin1II CATG 2 cut(s) 181, 266
HinfI GANTC 1 cut(s) 144
Hpy166II GTNNAC 1 cut(s) 491
Hpy188I TCNGA 1 cut(s) 161
Hpy188III TCNNGA 1 cut(s) 430
Hpy8I GTNNAC 1 cut(s) 491
HpyAV CCTTC 1 cut(s) 427
HpyCH4III ACNGT 2 cut(s) 417, 548
HpyCH4IV ACGT 1 cut(s) 278
HpyCH4V TGCA 1 cut(s) 563
HpyF10VI GCNNNNNNNGC 4 cut(s) 173, 182, 293, 397
HpyF3I CTNAG 1 cut(s) 208
HpySE526I ACGT 1 cut(s) 278
Hsp92II CATG 2 cut(s) 181, 266
Kzo9I GATC 2 cut(s) 324, 384
LpnPI CCDG 9 cut(s) 22, 42, 93, 200, 214, 339, 342, 366, 377
Lsp1109I GCAGC 2 cut(s) 296, 575
LweI GCATC 2 cut(s) 176, 295
MaeI CTAG 1 cut(s) 583
MaeII ACGT 1 cut(s) 278
MaeIII GTNAC 3 cut(s) 274, 358, 578
MalI GATC 2 cut(s) 326, 386
MboI GATC 2 cut(s) 324, 384
MboII GAAGA 6 cut(s) 27, 30, 81, 122, 351, 533
MluCI AATT 2 cut(s) 122, 319
MnlI CCTC 5 cut(s) 138, 150, 335, 361, 411
MspA1I CMGCKG 1 cut(s) 204
MspR9I CCNGG 1 cut(s) 354
Mva1269I GAATGC 1 cut(s) 565
MvaI CCWGG 1 cut(s) 354
MwoI GCNNNNNNNGC 4 cut(s) 173, 182, 293, 397
NcoI CCATGG 1 cut(s) 177
NdeI CATATG 1 cut(s) 454
NdeII GATC 2 cut(s) 324, 384
NlaIII CATG 2 cut(s) 181, 266
NspV TTCGAA 2 cut(s) 133, 337
PcsI WCGNNNNNNNCGW 1 cut(s) 139
PctI GAATGC 1 cut(s) 565
PfeI GAWTC 1 cut(s) 144
PkrI GCNGC 4 cut(s) 166, 206, 286, 565
Psp6I CCWGG 1 cut(s) 352
PspFI CCCAGC 2 cut(s) 79, 391
PspGI CCWGG 1 cut(s) 352
SatI GCNGC 4 cut(s) 165, 205, 285, 564
Sau3AI GATC 2 cut(s) 324, 384
ScrFI CCNGG 1 cut(s) 354
SetI ASST 7 cut(s) 214, 220, 228, 281, 355, 393, 438
SfaNI GCATC 2 cut(s) 176, 295
SfcI CTRYAG 1 cut(s) 380
SfuI TTCGAA 2 cut(s) 133, 337
SmlI CTYRAG 1 cut(s) 502
SmoI CTYRAG 1 cut(s) 502
Sse9I AATT 2 cut(s) 122, 319
SsiI CCGC 4 cut(s) 165, 204, 282, 292
SspMI CTAG 1 cut(s) 583
StyD4I CCNGG 1 cut(s) 352
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 2 cut(s) 417, 548
TaiI ACGT 1 cut(s) 281
TaqI TCGA 6 cut(s) 133, 142, 170, 323, 337, 429
TasI AATT 2 cut(s) 122, 319
TauI GCSGC 2 cut(s) 167, 207
TfiI GAWTC 1 cut(s) 144
TseI GCWGC 2 cut(s) 284, 563
TspDTI ATGAA 3 cut(s) 30, 236, 389
XspI CTAG 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.