Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0007945

Physical Location & Seq

Genomic Coordinates Forward (+)

2830660 .. 2833049

Gene Structure 2390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G059300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGACGGCCTGCTTGTTTCTAAATCTGCCACTTTCTTCTTCATCTGCTGCGTTTACTTCTCATACTAATAAGAATTACCCTTCGCTAGCTTCACACCTACTTCTCACTCTAACCCCAAACCAGTCCTTTCTTCGAGCCCCTCGGTTCTCACGCCAAATCAAAGCCTCATCAGCTTCCATGGAAGCCCAGCAAAGTGAGACCGGCGTCTCAACCCCACCTATGAAGCTCTTGTTCGTGGAGATGGGTGTGGGCTACGACCAACATGGGCAAGACGTTACCGCTGCATCAATGCGGGCTTGCAGAGATGCCATCTCCTCTAATTCAATCCCTGCGTTTCGAAGAGGGTCAATACCTGGTGTTACATTTGAGGAGATGAAACTAGAGATCAAGCTGGGTGTGCCTCATTTACTCCAACCGTCACTGGATGTCGAAAGGGTCAAATCAGTCTTTCCTTATGGAAAAATTGTGAAAGTTGAAGTTGTGGATGGCGGACTGATATGCTCAAGTGGTGTGTGCGTGGAAGAAATGGGAGATAAGAATGACGACTGTTATATAGTGAATGCAGCAGTCTACATTGGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lin0512_fam

Protein Analysis

195

Amino Acids

21.0

Weight (kDa)

6.41

Isoelectric Point (pI)

40.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29040 AT1G29040 AT1G29040 AT1G29040 AT1G29040
fragaria_vesca	FvH4_3g07991
malus_domestica	MD10G1282600.v1.1
prunus_persica	Prupe.4G059300_v2.0.a1
pyrus_communis	pycom10g23570
rosa_chinensis	RchiOBHm_Chr5g0010321
rosa_laevigata	RLG00000031737
rosa_multiflora	Rmu_sc0007816.1_g000001 Rmu_sc0012578.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065930
rosa_rugosa	Rorug04G0450100 Rorug05G0222000
rosa_samantha	Rh5AG081300 Rh5CG089500 Rh5DG076900 Rh7BG024200 Rh7BG282600 Rh7BG456500 Rh7CG471700
rosa_wichuraiana	Rw5G007530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	570
AciI	CCGC	3 cut(s)	279, 292, 489
AcyI	GRCGYC	1 cut(s)	204
AgsI	TTSAA	2 cut(s)	324, 476
AjnI	CCWGG	1 cut(s)	352
AluBI	AGCT	4 cut(s)	89, 173, 226, 391
AluI	AGCT	4 cut(s)	89, 173, 226, 391
Alw26I	GTCTC	2 cut(s)	191, 211
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	3 cut(s)	47, 281, 563
AsuII	TTCGAA	1 cut(s)	337
AsuNHI	GCTAGC	1 cut(s)	85
BanII	GRGCYC	1 cut(s)	139
BbvI	GCAGC	3 cut(s)	34, 268, 575
BccI	CCATC	3 cut(s)	235, 317, 479
BceAI	ACGGC	1 cut(s)	21
BciT130I	CCWGG	1 cut(s)	354
BcoDI	GTCTC	2 cut(s)	191, 211
BfaI	CTAG	3 cut(s)	86, 380, 583
BisI	GCNGC	3 cut(s)	48, 282, 564
BlsI	GCNGC	3 cut(s)	49, 283, 565
Bme1390I	CCNGG	1 cut(s)	354
BmrFI	CCNGG	1 cut(s)	354
BmsI	GCATC	2 cut(s)	293, 295
BmtI	GCTAGC	1 cut(s)	89
BoxI	GACNNNNGTC	1 cut(s)	203
Bpu14I	TTCGAA	1 cut(s)	337
BpuEI	CTTGAG	1 cut(s)	487
BsaHI	GRCGYC	1 cut(s)	204
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	140, 177
Bse118I	RCCGGY	1 cut(s)	200
Bse1I	ACTGG	2 cut(s)	121, 426
BseBI	CCWGG	1 cut(s)	354
BseDI	CCNNGG	2 cut(s)	140, 177
BseGI	GGATG	2 cut(s)	430, 490
BseNI	ACTGG	2 cut(s)	121, 426
BseRI	GAGGAG	2 cut(s)	304, 383
BseXI	GCAGC	3 cut(s)	34, 268, 575
BseYI	CCCAGC	2 cut(s)	186, 391
BshFI	GGCC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	201
BsmAI	GTCTC	2 cut(s)	191, 211
BsmBI	CGTCTC	1 cut(s)	211
BsmI	GAATGC	1 cut(s)	565
BsnI	GGCC	1 cut(s)	8
Bso31I	GGTCTC	1 cut(s)	191
Bsp119I	TTCGAA	1 cut(s)	337
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp143I	GATC	1 cut(s)	384
Bsp19I	CCATGG	1 cut(s)	177
BspACI	CCGC	3 cut(s)	279, 292, 489
BspANI	GGCC	1 cut(s)	8
BspOI	GCTAGC	1 cut(s)	89
BspT104I	TTCGAA	1 cut(s)	337
BspTNI	GGTCTC	1 cut(s)	191
BsrFI	RCCGGY	1 cut(s)	200
BsrI	ACTGG	2 cut(s)	121, 426
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	2 cut(s)	140, 177
BssMI	GATC	1 cut(s)	384
BssNI	GRCGYC	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	2 cut(s)	417, 548
Bst6I	CTCTTC	1 cut(s)	334
BstACI	GRCGYC	1 cut(s)	204
BstBI	TTCGAA	1 cut(s)	337
BstC8I	GCNNGC	4 cut(s)	10, 87, 294, 298
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	2 cut(s)	430, 490
BstKTI	GATC	1 cut(s)	387
BstMAI	GTCTC	2 cut(s)	191, 211
BstMBI	GATC	1 cut(s)	384
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 397
BstNI	CCWGG	1 cut(s)	354
BstPAI	GACNNNNGTC	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	352
BstV1I	GCAGC	3 cut(s)	34, 268, 575
BsuRI	GGCC	1 cut(s)	8
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	430, 490
BtsIMutI	CAGTG	1 cut(s)	419
Cac8I	GCNNGC	4 cut(s)	10, 87, 294, 298
Cfr10I	RCCGGY	1 cut(s)	200
CseI	GACGC	1 cut(s)	193
CsiI	ACCWGGT	1 cut(s)	352
CviAII	CATG	2 cut(s)	178, 263
DpnI	GATC	1 cut(s)	386
DpnII	GATC	1 cut(s)	384
Eam1104I	CTCTTC	1 cut(s)	334
EarI	CTCTTC	1 cut(s)	334
EciI	GGCGGA	1 cut(s)	504
Eco130I	CCWWGG	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	139
Eco31I	GGTCTC	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	352
EcoT14I	CCWWGG	1 cut(s)	177
EcoT38I	GRGCYC	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	177
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	2 cut(s)	181, 266
FaiI	YATR	8 cut(s)	63, 179, 221, 264, 456, 499, 552, 554
FatI	CATG	2 cut(s)	177, 262
FauI	CCCGC	1 cut(s)	285
FblI	GTMKAC	1 cut(s)	570
Fnu4HI	GCNGC	3 cut(s)	48, 282, 564
FokI	GGATG	2 cut(s)	437, 497
FriOI	GRGCYC	1 cut(s)	139
Fsp4HI	GCNGC	3 cut(s)	48, 282, 564
FspBI	CTAG	3 cut(s)	86, 380, 583
GluI	GCNGC	3 cut(s)	48, 282, 564
GsaI	CCCAGC	2 cut(s)	190, 395
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	201
HgaI	GACGC	1 cut(s)	193
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	2 cut(s)	181, 266
HpaII	CCGG	1 cut(s)	201
Hpy166II	GTNNAC	2 cut(s)	54, 571
Hpy8I	GTNNAC	2 cut(s)	54, 571
HpyAV	CCTTC	1 cut(s)	90
HpyCH4III	ACNGT	2 cut(s)	417, 548
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	3 cut(s)	284, 300, 563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 397
HpySE526I	ACGT	1 cut(s)	273
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	181, 266
Kzo9I	GATC	1 cut(s)	384
LpnPI	CCDG	9 cut(s)	22, 134, 200, 214, 339, 342, 366, 377, 407
Lsp1109I	GCAGC	3 cut(s)	34, 268, 575
LweI	GCATC	2 cut(s)	293, 295
MabI	ACCWGGT	1 cut(s)	352
MaeI	CTAG	3 cut(s)	86, 380, 583
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	4 cut(s)	274, 358, 417, 578
MalI	GATC	1 cut(s)	386
MboI	GATC	1 cut(s)	384
MboII	GAAGA	5 cut(s)	27, 30, 122, 351, 533
MhlI	GDGCHC	1 cut(s)	139
MluCI	AATT	3 cut(s)	73, 319, 462
MmeI	TCCRAC	1 cut(s)	436
MnlI	CCTC	6 cut(s)	150, 175, 325, 335, 361, 411
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	1 cut(s)	354
Mva1269I	GAATGC	1 cut(s)	565
MvaI	CCWGG	1 cut(s)	354
MwoI	GCNNNNNNNGC	2 cut(s)	170, 397
NcoI	CCATGG	1 cut(s)	177
NdeII	GATC	1 cut(s)	384
NheI	GCTAGC	1 cut(s)	85
NlaIII	CATG	2 cut(s)	181, 266
NmuCI	GTSAC	1 cut(s)	417
NspV	TTCGAA	1 cut(s)	337
PctI	GAATGC	1 cut(s)	565
PkrI	GCNGC	3 cut(s)	49, 283, 565
PshAI	GACNNNNGTC	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	352
PspFI	CCCAGC	2 cut(s)	186, 391
PspGI	CCWGG	1 cut(s)	352
SatI	GCNGC	3 cut(s)	48, 282, 564
Sau3AI	GATC	1 cut(s)	384
ScrFI	CCNGG	1 cut(s)	354
SduI	GDGCHC	1 cut(s)	139
SetI	ASST	8 cut(s)	91, 99, 175, 220, 228, 276, 355, 393
SexAI	ACCWGGT	1 cut(s)	352
SfaNI	GCATC	2 cut(s)	293, 295
SfuI	TTCGAA	1 cut(s)	337
SmlI	CTYRAG	1 cut(s)	502
SmoI	CTYRAG	1 cut(s)	502
Sse9I	AATT	3 cut(s)	73, 319, 462
SsiI	CCGC	3 cut(s)	279, 292, 489
SspMI	CTAG	3 cut(s)	86, 380, 583
StyD4I	CCNGG	1 cut(s)	352
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	2 cut(s)	417, 548
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	3 cut(s)	133, 337, 429
TasI	AATT	3 cut(s)	73, 319, 462
TscAI	CASTG	1 cut(s)	426
TseFI	GTSAC	1 cut(s)	417
TseI	GCWGC	3 cut(s)	47, 281, 563
Tsp45I	GTSAC	1 cut(s)	417
TspDTI	ATGAA	3 cut(s)	30, 236, 389
TspRI	CASTG	1 cut(s)	426
XmiI	GTMKAC	1 cut(s)	570
XspI	CTAG	3 cut(s)	86, 380, 583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.