Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007816.1

Orthogroup ID

OG0007945

Physical Location & Seq

Genomic Coordinates Forward (+)

13275 .. 15174

Gene Structure 1900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007816.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgacggcctgcttgttcctaaatctgccagtttcttcttcatctgcttcctttacttctcaaactaataagaaaaacccagcagtttcttcacactcacttctcactctaatcccaacccaattccctcttcgaacccctcgattctcacgccaagtcagagccgcatcgattgccatggaagcccagaaaagtgagaccagcggctcagctcaacctatgaagctcttgttcgtggagatgggtgtgggctatgaccaacatgggcaagatgttacgtccgcagcaatgcgggcttgtagagatgccatcacttccaattcgatccctgcttttcgaagagggtcaatacctggagttacatttgaggagatgaaactacagatcaagctgggagtgcctcatatactacaacagtcgctcgatgtcgagaaggtcaaatcagtctttccatatggaaagattttgaatgttgaagttgttgatggtggactgatatgctcaagtggtgtggttgtagaagatatgggagataagaatgatgactgttacatagtgaatgcagcagtttatattggttactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lin0512_fam

Protein Analysis

194

Amino Acids

20.96

Weight (kDa)

7.66

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29040 AT1G29040 AT1G29040 AT1G29040 AT1G29040
fragaria_vesca	FvH4_3g07991
malus_domestica	MD10G1282600.v1.1
prunus_persica	Prupe.4G059300_v2.0.a1
pyrus_communis	pycom10g23570
rosa_chinensis	RchiOBHm_Chr5g0010321
rosa_laevigata	RLG00000031737
rosa_multiflora	Rmu_sc0007816.1_g000001 Rmu_sc0012578.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065930
rosa_rugosa	Rorug04G0450100 Rorug05G0222000
rosa_samantha	Rh5AG081300 Rh5CG089500 Rh5DG076900 Rh7BG024200 Rh7BG282600 Rh7BG456500 Rh7CG471700
rosa_wichuraiana	Rw5G007530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	165, 204, 282, 292
AclWI	GGATC	1 cut(s)	319
AgsI	TTSAA	2 cut(s)	469, 476
AjnI	CCWGG	1 cut(s)	352
AjuI	GAANNNNNNNTTGG	2 cut(s)	114, 146
AluBI	AGCT	3 cut(s)	212, 226, 391
AluI	AGCT	3 cut(s)	212, 226, 391
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	1 cut(s)	319
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	2 cut(s)	284, 563
AsuII	TTCGAA	2 cut(s)	133, 337
BbvI	GCAGC	2 cut(s)	296, 575
BccI	CCATC	3 cut(s)	235, 317, 479
BceAI	ACGGC	1 cut(s)	21
BciT130I	CCWGG	1 cut(s)	354
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	1 cut(s)	583
BfmI	CTRYAG	1 cut(s)	380
BisI	GCNGC	4 cut(s)	165, 205, 285, 564
BlpI	GCTNAGC	1 cut(s)	208
BlsI	GCNGC	4 cut(s)	166, 206, 286, 565
Bme1390I	CCNGG	1 cut(s)	354
BmrFI	CCNGG	1 cut(s)	354
BmsI	GCATC	2 cut(s)	176, 295
BpmI	CTGGAG	1 cut(s)	375
Bpu1102I	GCTNAGC	1 cut(s)	208
Bpu14I	TTCGAA	2 cut(s)	133, 337
BpuEI	CTTGAG	1 cut(s)	487
Bsa29I	ATCGAT	1 cut(s)	170
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	177
Bse1I	ACTGG	1 cut(s)	29
Bse3DI	GCAATG	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	354
BseCI	ATCGAT	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	177
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	29
BseRI	GAGGAG	1 cut(s)	383
BseXI	GCAGC	2 cut(s)	296, 575
BseYI	CCCAGC	2 cut(s)	79, 391
BshFI	GGCC	1 cut(s)	8
BshVI	ATCGAT	1 cut(s)	170
BsmAI	GTCTC	1 cut(s)	191
BsmI	GAATGC	1 cut(s)	565
BsnI	GGCC	1 cut(s)	8
Bso31I	GGTCTC	1 cut(s)	191
Bsp119I	TTCGAA	2 cut(s)	133, 337
Bsp143I	GATC	2 cut(s)	324, 384
Bsp1720I	GCTNAGC	1 cut(s)	208
Bsp19I	CCATGG	1 cut(s)	177
BspACI	CCGC	4 cut(s)	165, 204, 282, 292
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	221
BspDI	ATCGAT	1 cut(s)	170
BspPI	GGATC	1 cut(s)	319
BspT104I	TTCGAA	2 cut(s)	133, 337
BspTNI	GGTCTC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	294
BsrI	ACTGG	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	2 cut(s)	324, 384
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	2 cut(s)	417, 548
Bst6I	CTCTTC	2 cut(s)	135, 334
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstBI	TTCGAA	2 cut(s)	133, 337
BstC8I	GCNNGC	2 cut(s)	10, 294
BstDEI	CTNAG	1 cut(s)	208
BstDSI	CCRYGG	1 cut(s)	177
BstKTI	GATC	2 cut(s)	327, 387
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	2 cut(s)	324, 384
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 182, 293, 397
BstNI	CCWGG	1 cut(s)	354
BstSCI	CCNGG	1 cut(s)	352
BstSFI	CTRYAG	1 cut(s)	380
BstV1I	GCAGC	2 cut(s)	296, 575
Bsu15I	ATCGAT	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	8
BsuTUI	ATCGAT	1 cut(s)	170
BtgI	CCRYGG	1 cut(s)	177
Cac8I	GCNNGC	2 cut(s)	10, 294
ClaI	ATCGAT	1 cut(s)	170
CspCI	CAANNNNNGTGG	2 cut(s)	492, 527
CviAII	CATG	2 cut(s)	178, 263
CviJI	RGCY	9 cut(s)	8, 164, 185, 207, 212, 226, 252, 296, 391
CviKI_1	RGCY	9 cut(s)	8, 164, 185, 207, 212, 226, 252, 296, 391
DdeI	CTNAG	1 cut(s)	208
DpnI	GATC	2 cut(s)	326, 386
DpnII	GATC	2 cut(s)	324, 384
Eam1104I	CTCTTC	2 cut(s)	135, 334
EarI	CTCTTC	2 cut(s)	135, 334
Eco130I	CCWWGG	1 cut(s)	177
Eco31I	GGTCTC	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	352
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	2 cut(s)	181, 266
FatI	CATG	2 cut(s)	177, 262
FauI	CCCGC	1 cut(s)	285
FauNDI	CATATG	1 cut(s)	454
Fnu4HI	GCNGC	4 cut(s)	165, 205, 285, 564
Fsp4HI	GCNGC	4 cut(s)	165, 205, 285, 564
FspBI	CTAG	1 cut(s)	583
GluI	GCNGC	4 cut(s)	165, 205, 285, 564
GsaI	CCCAGC	2 cut(s)	83, 395
GsuI	CTGGAG	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	8
Hin1II	CATG	2 cut(s)	181, 266
HinfI	GANTC	1 cut(s)	144
Hpy166II	GTNNAC	1 cut(s)	491
Hpy188I	TCNGA	1 cut(s)	161
Hpy188III	TCNNGA	1 cut(s)	430
Hpy8I	GTNNAC	1 cut(s)	491
HpyAV	CCTTC	1 cut(s)	427
HpyCH4III	ACNGT	2 cut(s)	417, 548
HpyCH4IV	ACGT	1 cut(s)	278
HpyCH4V	TGCA	1 cut(s)	563
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 182, 293, 397
HpyF3I	CTNAG	1 cut(s)	208
HpySE526I	ACGT	1 cut(s)	278
Hsp92II	CATG	2 cut(s)	181, 266
Kzo9I	GATC	2 cut(s)	324, 384
LpnPI	CCDG	9 cut(s)	22, 42, 93, 200, 214, 339, 342, 366, 377
Lsp1109I	GCAGC	2 cut(s)	296, 575
LweI	GCATC	2 cut(s)	176, 295
MaeI	CTAG	1 cut(s)	583
MaeII	ACGT	1 cut(s)	278
MaeIII	GTNAC	4 cut(s)	274, 358, 548, 578
MalI	GATC	2 cut(s)	326, 386
MboI	GATC	2 cut(s)	324, 384
MboII	GAAGA	6 cut(s)	27, 30, 81, 122, 351, 533
MluCI	AATT	2 cut(s)	122, 319
MnlI	CCTC	5 cut(s)	138, 150, 335, 361, 411
MspA1I	CMGCKG	1 cut(s)	204
MspR9I	CCNGG	1 cut(s)	354
Mva1269I	GAATGC	1 cut(s)	565
MvaI	CCWGG	1 cut(s)	354
MwoI	GCNNNNNNNGC	4 cut(s)	173, 182, 293, 397
NcoI	CCATGG	1 cut(s)	177
NdeI	CATATG	1 cut(s)	454
NdeII	GATC	2 cut(s)	324, 384
NlaIII	CATG	2 cut(s)	181, 266
NspV	TTCGAA	2 cut(s)	133, 337
PcsI	WCGNNNNNNNCGW	1 cut(s)	139
PctI	GAATGC	1 cut(s)	565
PfeI	GAWTC	1 cut(s)	144
PkrI	GCNGC	4 cut(s)	166, 206, 286, 565
Psp6I	CCWGG	1 cut(s)	352
PspFI	CCCAGC	2 cut(s)	79, 391
PspGI	CCWGG	1 cut(s)	352
SatI	GCNGC	4 cut(s)	165, 205, 285, 564
Sau3AI	GATC	2 cut(s)	324, 384
ScrFI	CCNGG	1 cut(s)	354
SetI	ASST	7 cut(s)	214, 220, 228, 281, 355, 393, 438
SfaNI	GCATC	2 cut(s)	176, 295
SfcI	CTRYAG	1 cut(s)	380
SfuI	TTCGAA	2 cut(s)	133, 337
SmlI	CTYRAG	1 cut(s)	502
SmoI	CTYRAG	1 cut(s)	502
Sse9I	AATT	2 cut(s)	122, 319
SsiI	CCGC	4 cut(s)	165, 204, 282, 292
SspMI	CTAG	1 cut(s)	583
StyD4I	CCNGG	1 cut(s)	352
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	2 cut(s)	417, 548
TaiI	ACGT	1 cut(s)	281
TaqI	TCGA	7 cut(s)	133, 142, 170, 323, 337, 423, 429
TasI	AATT	2 cut(s)	122, 319
TauI	GCSGC	2 cut(s)	167, 207
TfiI	GAWTC	1 cut(s)	144
TseI	GCWGC	2 cut(s)	284, 563
TspDTI	ATGAA	3 cut(s)	30, 236, 389
XspI	CTAG	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.