Rroxscaffold_1G00065930

Conserved hypothetical protein (Lin0512_fam)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0007945
Physical Location & Seq
Reverse (-)
87468444 .. 87470782
2339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00065930.1

Sequence Viewer

Length: 618 bp
ATGAAACTTTTGTTTTCTGGGAAAAGAAAGAAAATGACGGCCTGCTTGTTCCTAAATCTGCAACTTTCTTCTTCATCTGCTTCCTTTACTTCTCAAACTAATAAGAATAACCCAGCAGTTTCTTCATACTCACTTCTCACTCTAATCCCAACCCAATTCCCTCTTCGAACCCCTCGATTCTCACGCCAAGTCAGAGCCGCATCGACTGCCATGGAAGCCCAGAAAAGTGAGACCAGCGGCTCAGCTCAACCTATGAAGCTCTTGTTCGTGGAGATGGGTGTGGGCTACGACCAACATGGGCAAGATGTTACGTCCGCAGCAATGCGGGCTTGTAGAGATGCCATCACTTCCAATTCGATCCCCGCTTTTCGAAGAGGGTCAATACCTGGTGTTACATTTGAGGAGATGAAACTACAGATCAAGCTGGGAGTGCCTCATATACTACAACAGTCGCTTGATGTCGAGAAGGTCAAATCAGTCTTTCCATATGGAAAGATTTTGAATGTTGAAGTTGTTGATGGTGGACTGATATGCTCAAGTGGCGTGGTTGTAGAAGATATGGGAGATAAGAATGATGACTGTTATATAGTGAATGCAGCAGTTTATATTGGCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lin0512_fam

Protein Analysis

205

Amino Acids

22.33

Weight (kDa)

9.05

Isoelectric Point (pI)

42.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lin0512_fam PF09585 88 - 202 1.3e-38 Conserved hypothetical protein (Lin0512_fam)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 198, 237, 315, 325, 363
AclWI GGATC 1 cut(s) 352
AgsI TTSAA 2 cut(s) 502, 509
AjnI CCWGG 1 cut(s) 385
AjuI GAANNNNNNNTTGG 2 cut(s) 147, 179
AluBI AGCT 3 cut(s) 245, 259, 424
AluI AGCT 3 cut(s) 245, 259, 424
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 1 cut(s) 352
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 2 cut(s) 317, 596
AsuII TTCGAA 2 cut(s) 166, 370
BbvI GCAGC 2 cut(s) 329, 608
BccI CCATC 3 cut(s) 268, 350, 512
BceAI ACGGC 1 cut(s) 54
BciT130I CCWGG 1 cut(s) 387
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 1 cut(s) 616
BfmI CTRYAG 1 cut(s) 413
BisI GCNGC 4 cut(s) 198, 238, 318, 597
BlpI GCTNAGC 1 cut(s) 241
BlsI GCNGC 4 cut(s) 199, 239, 319, 598
Bme1390I CCNGG 1 cut(s) 387
BmrFI CCNGG 1 cut(s) 387
BmsI GCATC 2 cut(s) 209, 328
Bpu1102I GCTNAGC 1 cut(s) 241
Bpu14I TTCGAA 2 cut(s) 166, 370
BpuEI CTTGAG 1 cut(s) 520
BsaI GGTCTC 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 210
Bse3DI GCAATG 1 cut(s) 327
BseBI CCWGG 1 cut(s) 387
BseDI CCNNGG 1 cut(s) 210
BseMI GCAATG 1 cut(s) 327
BseMII CTCAG 1 cut(s) 255
BseRI GAGGAG 1 cut(s) 416
BseXI GCAGC 2 cut(s) 329, 608
BseYI CCCAGC 2 cut(s) 112, 424
BshFI GGCC 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 224
BsmI GAATGC 1 cut(s) 598
BsnI GGCC 1 cut(s) 41
Bso31I GGTCTC 1 cut(s) 224
Bsp119I TTCGAA 2 cut(s) 166, 370
Bsp143I GATC 2 cut(s) 357, 417
Bsp1720I GCTNAGC 1 cut(s) 241
Bsp19I CCATGG 1 cut(s) 210
BspACI CCGC 5 cut(s) 198, 237, 315, 325, 363
BspANI GGCC 1 cut(s) 41
BspCNI CTCAG 1 cut(s) 254
BspPI GGATC 1 cut(s) 352
BspT104I TTCGAA 2 cut(s) 166, 370
BspTNI GGTCTC 1 cut(s) 224
BsrDI GCAATG 1 cut(s) 327
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 2 cut(s) 357, 417
BssT1I CCWWGG 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 387
Bst4CI ACNGT 2 cut(s) 450, 581
Bst6I CTCTTC 2 cut(s) 168, 367
BstAPI GCANNNNNTGC 1 cut(s) 206
BstBI TTCGAA 2 cut(s) 166, 370
BstC8I GCNNGC 2 cut(s) 43, 327
BstDEI CTNAG 1 cut(s) 241
BstDSI CCRYGG 1 cut(s) 210
BstKTI GATC 2 cut(s) 360, 420
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 2 cut(s) 357, 417
BstMWI GCNNNNNNNGC 5 cut(s) 206, 215, 326, 430, 540
BstNI CCWGG 1 cut(s) 387
BstSCI CCNGG 1 cut(s) 385
BstSFI CTRYAG 1 cut(s) 413
BstV1I GCAGC 2 cut(s) 329, 608
BsuRI GGCC 1 cut(s) 41
BtgI CCRYGG 1 cut(s) 210
Cac8I GCNNGC 2 cut(s) 43, 327
CsiI ACCWGGT 1 cut(s) 385
CspCI CAANNNNNGTGG 2 cut(s) 525, 560
CviAII CATG 2 cut(s) 211, 296
DdeI CTNAG 1 cut(s) 241
DpnI GATC 2 cut(s) 359, 419
DpnII GATC 2 cut(s) 357, 417
Eam1104I CTCTTC 2 cut(s) 168, 367
EarI CTCTTC 2 cut(s) 168, 367
Eco130I CCWWGG 1 cut(s) 210
Eco31I GGTCTC 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 385
EcoT14I CCWWGG 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 2 cut(s) 214, 299
FatI CATG 2 cut(s) 210, 295
FauI CCCGC 2 cut(s) 318, 370
FauNDI CATATG 1 cut(s) 487
Fnu4HI GCNGC 4 cut(s) 198, 238, 318, 597
Fsp4HI GCNGC 4 cut(s) 198, 238, 318, 597
FspBI CTAG 1 cut(s) 616
GluI GCNGC 4 cut(s) 198, 238, 318, 597
GsaI CCCAGC 2 cut(s) 116, 428
HaeIII GGCC 1 cut(s) 41
Hin1II CATG 2 cut(s) 214, 299
HinfI GANTC 1 cut(s) 177
Hpy166II GTNNAC 1 cut(s) 524
Hpy188I TCNGA 1 cut(s) 194
Hpy188III TCNNGA 1 cut(s) 463
Hpy8I GTNNAC 1 cut(s) 524
HpyAV CCTTC 1 cut(s) 460
HpyCH4III ACNGT 2 cut(s) 450, 581
HpyCH4IV ACGT 1 cut(s) 311
HpyCH4V TGCA 2 cut(s) 61, 596
HpyF10VI GCNNNNNNNGC 5 cut(s) 206, 215, 326, 430, 540
HpyF3I CTNAG 1 cut(s) 241
HpySE526I ACGT 1 cut(s) 311
Hsp92II CATG 2 cut(s) 214, 299
Kzo9I GATC 2 cut(s) 357, 417
LpnPI CCDG 8 cut(s) 3, 55, 126, 233, 247, 372, 399, 410
Lsp1109I GCAGC 2 cut(s) 329, 608
LweI GCATC 2 cut(s) 209, 328
MabI ACCWGGT 1 cut(s) 385
MaeI CTAG 1 cut(s) 616
MaeII ACGT 1 cut(s) 311
MaeIII GTNAC 2 cut(s) 307, 391
MalI GATC 2 cut(s) 359, 419
MboI GATC 2 cut(s) 357, 417
MboII GAAGA 6 cut(s) 60, 63, 114, 155, 384, 566
MluCI AATT 2 cut(s) 155, 352
MnlI CCTC 5 cut(s) 171, 183, 368, 394, 444
MspA1I CMGCKG 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 387
Mva1269I GAATGC 1 cut(s) 598
MvaI CCWGG 1 cut(s) 387
MwoI GCNNNNNNNGC 5 cut(s) 206, 215, 326, 430, 540
NcoI CCATGG 1 cut(s) 210
NdeI CATATG 1 cut(s) 487
NdeII GATC 2 cut(s) 357, 417
NlaIII CATG 2 cut(s) 214, 299
NspV TTCGAA 2 cut(s) 166, 370
PcsI WCGNNNNNNNCGW 1 cut(s) 172
PctI GAATGC 1 cut(s) 598
PfeI GAWTC 1 cut(s) 177
PkrI GCNGC 4 cut(s) 199, 239, 319, 598
Psp6I CCWGG 1 cut(s) 385
PspFI CCCAGC 2 cut(s) 112, 424
PspGI CCWGG 1 cut(s) 385
SatI GCNGC 4 cut(s) 198, 238, 318, 597
Sau3AI GATC 2 cut(s) 357, 417
ScrFI CCNGG 1 cut(s) 387
SetI ASST 7 cut(s) 247, 253, 261, 314, 388, 426, 471
SexAI ACCWGGT 1 cut(s) 385
SfaNI GCATC 2 cut(s) 209, 328
SfcI CTRYAG 1 cut(s) 413
SfuI TTCGAA 2 cut(s) 166, 370
SmlI CTYRAG 1 cut(s) 535
SmoI CTYRAG 1 cut(s) 535
Sse9I AATT 2 cut(s) 155, 352
SsiI CCGC 5 cut(s) 198, 237, 315, 325, 363
SspMI CTAG 1 cut(s) 616
StyD4I CCNGG 1 cut(s) 385
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 2 cut(s) 450, 581
TaiI ACGT 1 cut(s) 314
TaqI TCGA 6 cut(s) 166, 175, 203, 356, 370, 462
TasI AATT 2 cut(s) 155, 352
TauI GCSGC 2 cut(s) 200, 240
TfiI GAWTC 1 cut(s) 177
TseI GCWGC 2 cut(s) 317, 596
TspDTI ATGAA 5 cut(s) 17, 63, 114, 269, 422
XspI CTAG 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.