FvH4_3g07991

Conserved hypothetical protein (Lin0512_fam)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007945
Physical Location & Seq
Reverse (-)
4708699 .. 4711784
3086 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g07991.t1

Sequence Viewer

Length: 585 bp
ATGACGGCCTGCTTTTTCCTAAATCTCACACTTCATTCTTCATCTGCTTCCTTTACTTCTCAAACTAACAAGAAAAACCCAGCAGTTTCTTCACACTCACTTCTCACTCTAACCCCAACCCAGTTCCCTCTTCGAACCCCTCGATTCTCACGCCAAGTCAGAGTCGCATCGACTGCCATGGAAGCCCAGAAAGCTGAGAGCTGCGGTTCAGCTCAAGCTATGAAGCTCTTGTTCGTGGAGATGGGTGTGGGCTATGACCAACATGGGCAAGATGTTACTTCTGCAGCAATGCGGGCTTGTAGAGATGCCATCACTTCCAATTCGATCCCTGCTTTTCGAAGAGGGTCAATACCTGGTGTTACATTTGGGGAGATGAAGCTACAGATCAAGCTGGGAGTGCCTCATATACTACAACAGTCACTTGATATCGAGAAGGTCAAATCAGTCTTTCCTTATGGGAAGATTTTGAATGTTGAAGTTGTTGATGGTGGACTTATATGCTCAAGTGGCGTGGTTGTAGAAGATATGGGAGATAAAAATGATGACTGTTATATAGTGAATGCAGCTGTTTATATTGGTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lin0512_fam

Protein Analysis

195

Amino Acids

20.97

Weight (kDa)

8.28

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lin0512_fam PF09585 77 - 191 2.8e-38 Conserved hypothetical protein (Lin0512_fam)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 204, 292
AclWI GGATC 1 cut(s) 319
AgsI TTSAA 2 cut(s) 469, 476
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 8 cut(s) 194, 201, 212, 218, 226, 379, 391, 566
AluI AGCT 8 cut(s) 194, 201, 212, 218, 226, 379, 391, 566
AlwI GGATC 1 cut(s) 319
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 3 cut(s) 201, 284, 563
AsuII TTCGAA 2 cut(s) 133, 337
BbvI GCAGC 3 cut(s) 188, 296, 575
BccI CCATC 3 cut(s) 235, 317, 479
BceAI ACGGC 1 cut(s) 21
BciT130I CCWGG 1 cut(s) 354
BfaI CTAG 1 cut(s) 583
BfmI CTRYAG 2 cut(s) 282, 380
BisI GCNGC 3 cut(s) 202, 285, 564
BlsI GCNGC 3 cut(s) 203, 286, 565
Bme1390I CCNGG 1 cut(s) 354
BmrFI CCNGG 1 cut(s) 354
BmrI ACTGGG 1 cut(s) 115
BmsI GCATC 2 cut(s) 176, 295
BmuI ACTGGG 1 cut(s) 115
Bpu14I TTCGAA 2 cut(s) 133, 337
BpuEI CTTGAG 2 cut(s) 198, 487
BsaJI CCNNGG 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 121
Bse3DI GCAATG 1 cut(s) 294
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 177
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 121
BseXI GCAGC 3 cut(s) 188, 296, 575
BseYI CCCAGC 2 cut(s) 79, 391
BshFI GGCC 1 cut(s) 8
BsmI GAATGC 1 cut(s) 565
BsnI GGCC 1 cut(s) 8
Bsp119I TTCGAA 2 cut(s) 133, 337
Bsp143I GATC 2 cut(s) 324, 384
Bsp19I CCATGG 1 cut(s) 177
BspACI CCGC 2 cut(s) 204, 292
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 187
BspMAI CTGCAG 1 cut(s) 286
BspPI GGATC 1 cut(s) 319
BspT104I TTCGAA 2 cut(s) 133, 337
BsrDI GCAATG 1 cut(s) 294
BsrI ACTGG 1 cut(s) 121
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 2 cut(s) 324, 384
BssT1I CCWWGG 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 2 cut(s) 417, 548
Bst6I CTCTTC 2 cut(s) 135, 334
BstAPI GCANNNNNTGC 1 cut(s) 173
BstBI TTCGAA 2 cut(s) 133, 337
BstC8I GCNNGC 2 cut(s) 10, 294
BstDEI CTNAG 1 cut(s) 195
BstDSI CCRYGG 1 cut(s) 177
BstKTI GATC 2 cut(s) 327, 387
BstMBI GATC 2 cut(s) 324, 384
BstMWI GCNNNNNNNGC 6 cut(s) 173, 182, 191, 293, 397, 507
BstNI CCWGG 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 352
BstSFI CTRYAG 2 cut(s) 282, 380
BstV1I GCAGC 3 cut(s) 188, 296, 575
BsuRI GGCC 1 cut(s) 8
BtgI CCRYGG 1 cut(s) 177
Cac8I GCNNGC 2 cut(s) 10, 294
CsiI ACCWGGT 1 cut(s) 352
CspCI CAANNNNNGTGG 2 cut(s) 492, 527
CviAII CATG 2 cut(s) 178, 263
DdeI CTNAG 1 cut(s) 195
DpnI GATC 2 cut(s) 326, 386
DpnII GATC 2 cut(s) 324, 384
Eam1104I CTCTTC 2 cut(s) 135, 334
EarI CTCTTC 2 cut(s) 135, 334
Eco130I CCWWGG 1 cut(s) 177
Eco32I GATATC 1 cut(s) 427
EcoRII CCWGG 1 cut(s) 352
EcoRV GATATC 1 cut(s) 427
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 2 cut(s) 181, 266
FatI CATG 2 cut(s) 177, 262
FauI CCCGC 1 cut(s) 285
Fnu4HI GCNGC 3 cut(s) 202, 285, 564
Fsp4HI GCNGC 3 cut(s) 202, 285, 564
FspBI CTAG 1 cut(s) 583
GluI GCNGC 3 cut(s) 202, 285, 564
GsaI CCCAGC 2 cut(s) 83, 395
HaeIII GGCC 1 cut(s) 8
Hin1II CATG 2 cut(s) 181, 266
HinfI GANTC 2 cut(s) 144, 162
Hpy166II GTNNAC 1 cut(s) 491
Hpy188I TCNGA 1 cut(s) 161
Hpy188III TCNNGA 1 cut(s) 430
Hpy8I GTNNAC 1 cut(s) 491
HpyAV CCTTC 1 cut(s) 427
HpyCH4III ACNGT 2 cut(s) 417, 548
HpyCH4V TGCA 2 cut(s) 284, 563
HpyF10VI GCNNNNNNNGC 6 cut(s) 173, 182, 191, 293, 397, 507
HpyF3I CTNAG 1 cut(s) 195
Hsp92II CATG 2 cut(s) 181, 266
Kzo9I GATC 2 cut(s) 324, 384
LpnPI CCDG 8 cut(s) 22, 93, 134, 200, 339, 342, 366, 377
Lsp1109I GCAGC 3 cut(s) 188, 296, 575
LweI GCATC 2 cut(s) 176, 295
MabI ACCWGGT 1 cut(s) 352
MaeI CTAG 1 cut(s) 583
MaeIII GTNAC 4 cut(s) 274, 358, 417, 578
MalI GATC 2 cut(s) 326, 386
MboI GATC 2 cut(s) 324, 384
MboII GAAGA 6 cut(s) 30, 81, 122, 351, 472, 533
MluCI AATT 1 cut(s) 319
MlyI GAGTC 1 cut(s) 171
MnlI CCTC 4 cut(s) 138, 150, 335, 411
MspA1I CMGCKG 1 cut(s) 566
MspR9I CCNGG 1 cut(s) 354
Mva1269I GAATGC 1 cut(s) 565
MvaI CCWGG 1 cut(s) 354
MwoI GCNNNNNNNGC 6 cut(s) 173, 182, 191, 293, 397, 507
NcoI CCATGG 1 cut(s) 177
NdeII GATC 2 cut(s) 324, 384
NlaIII CATG 2 cut(s) 181, 266
NmuCI GTSAC 1 cut(s) 417
NspV TTCGAA 2 cut(s) 133, 337
PcsI WCGNNNNNNNCGW 1 cut(s) 139
PctI GAATGC 1 cut(s) 565
PfeI GAWTC 1 cut(s) 144
PkrI GCNGC 3 cut(s) 203, 286, 565
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
Psp6I CCWGG 1 cut(s) 352
PspFI CCCAGC 2 cut(s) 79, 391
PspGI CCWGG 1 cut(s) 352
PstI CTGCAG 1 cut(s) 286
PvuII CAGCTG 1 cut(s) 566
SatI GCNGC 3 cut(s) 202, 285, 564
Sau3AI GATC 2 cut(s) 324, 384
SchI GAGTC 1 cut(s) 171
ScrFI CCNGG 1 cut(s) 354
SexAI ACCWGGT 1 cut(s) 352
SfaNI GCATC 2 cut(s) 176, 295
SfcI CTRYAG 2 cut(s) 282, 380
SfuI TTCGAA 2 cut(s) 133, 337
SmlI CTYRAG 2 cut(s) 213, 502
SmoI CTYRAG 2 cut(s) 213, 502
Sse9I AATT 1 cut(s) 319
SsiI CCGC 2 cut(s) 204, 292
SspMI CTAG 1 cut(s) 583
StyD4I CCNGG 1 cut(s) 352
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 2 cut(s) 417, 548
TaqI TCGA 6 cut(s) 133, 142, 170, 323, 337, 429
TasI AATT 1 cut(s) 319
TfiI GAWTC 1 cut(s) 144
TseFI GTSAC 1 cut(s) 417
TseI GCWGC 3 cut(s) 201, 284, 563
Tsp45I GTSAC 1 cut(s) 417
TspDTI ATGAA 4 cut(s) 23, 30, 236, 389
XspI CTAG 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.