Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014308

Physical Location & Seq

Genomic Coordinates Forward (+)

10375599 .. 10377871

Gene Structure 2273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G29670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGAGAGTTACTTAACGAAATGGTGTGTAGTGCTTGTGTTGTTGTGTTTCGGGTTTAGTGTAGTAAAAGCACAAGCACAAGCTCAAGTTCCATGTTTCTTTGTTTTTGGTGACTCTTTGGTTGACAATGGAAACAACAACGGTCTTATTTCTATTGCAAGATCCAATTACTTCCCTTACGGTATCGATTTCGGCGGCCCTACCGGCCGTTTCTCCAACGGCAAGACTACTGTTGATGTGATCGCTGAGCTACTTGGATTTAATGGCTACATTCCTGCGTACAATACTGTGAGTGGTCGGCAAATACTCTCCGGAGTTAACTACGCTTCCGCAGCTGCTGGAATCCGAGAAGAAACCGGTCGACAATTGGGACAAAGGATAAGCTTTAGTGGACAAGTTAGGAACTACCAGACCACAGTATCGCAAGTTGTGCAGCTTCTAGGAGACGAGACTCGTGCAGCTGATTACCTCAAGAGATGTATTTACTCTGTTGGTTTAGGAAGCAACGACTATCTCAACAACTACTTCATGCCTACGTTTTACTCTTCTAGCAGACAATTCACACCCGAACAATACGCTAACGATCTCATCAGTCGCTACAGCACCCAGCTCAATGCATTATACAACTATGGGGCTCGAAAGTTTGCATTGAGTGGAATTGGAGCAGTTGGTTGTAGTCCTAACGCGCTCGCAGGCAGTCCCGACGGTAGGACTTGCGTAGACCGCATCAACTCAGCAAACCAGATCTTCAACAACAAGCTAAGATCTCTTGTTGATCAGCTCAACAACAATCACCCTGATGCAAAGTTCATCTACATCAATGCTTATGGCATTTTCCAGGACATGATCACAAATCCTGCCAGATTTGGGTTTAGAGTGACGAACGCGGGATGTTGCGGTATTGGGAGGAATGCTGGACAGATCACATGTTTACCGGGACAGAGACCGTGTAGAGACCGCAATGCGTACGTGTTCTGGGACGCATTTCACCCTACTGAAGCCGCAAATGTGATCATCGCAAGGAGATCGTACAATGCACAATCGGCTTCAGACGCTTACCCTATGGATATTTCAAGGCTGGCACAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0030312 GO:0031976 GO:0031984 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

363

Amino Acids

39.87

Weight (kDa)

8.85

Isoelectric Point (pI)

25.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	34 - 341	1e-39	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29670 AT1G29670 AT5G45670
fragaria_vesca	FvH4_3g06610
malus_domestica	MD00G1093600.v1.1 MD10G1270600.v1.1
prunus_persica	Prupe.4G071100_v2.0.a1
pyrus_communis	pycom05g27060 pycom10g22640
rosa_chinensis	RchiOBHm_Chr5g0012531
rosa_laevigata	RLG00000031922
rosa_multiflora	Rmu_sc0001889.1_g000034
rosa_roxburghii	Rroxscaffold_1G00064160
rosa_rugosa	Rorug05G0002200
rosa_samantha	Rh5AG096200 Rh5CG105300
rosa_wichuraiana	Rw5G008420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	361, 720
AccII	CGCG	2 cut(s)	686, 887
AccIII	TCCGGA	1 cut(s)	311
AciI	CCGC	7 cut(s)	195, 330, 724, 887, 897, 958, 1002
AclWI	GGATC	1 cut(s)	156
AcoI	YGGCCR	1 cut(s)	205
AcuI	CTGAAG	2 cut(s)	1017, 1032
AfaI	GTAC	3 cut(s)	281, 968, 1031
AfiI	CCNNNNNNNGG	2 cut(s)	708, 867
AflIII	ACRYGT	2 cut(s)	926, 969
AgeI	ACCGGT	1 cut(s)	356
AgsI	TTSAA	2 cut(s)	751, 1074
AjnI	CCWGG	1 cut(s)	837
Alw26I	GTCTC	4 cut(s)	438, 443, 937, 948
AlwI	GGATC	1 cut(s)	156
AlwNI	CAGNNNCTG	1 cut(s)	338
Aor13HI	TCCGGA	1 cut(s)	311
AoxI	GGCC	2 cut(s)	196, 205
ApeKI	GCWGC	4 cut(s)	332, 335, 433, 458
AsiGI	ACCGGT	1 cut(s)	356
AspLEI	GCGC	1 cut(s)	688
AspS9I	GGNCC	1 cut(s)	197
AsuC2I	CCSGG	1 cut(s)	936
AsuHPI	GGTGA	3 cut(s)	122, 785, 980
BaeI	ACNNNNGTAYC	2 cut(s)	402, 435
BanII	GRGCYC	1 cut(s)	637
BauI	CACGAG	1 cut(s)	453
BbvI	GCAGC	4 cut(s)	322, 344, 445, 470
BceAI	ACGGC	2 cut(s)	192, 235
BcgI	CGANNNNNNTGC	4 cut(s)	437, 471, 1008, 1042
BciT130I	CCWGG	1 cut(s)	839
BclI	TGATCA	3 cut(s)	775, 846, 1011
BcnI	CCSGG	1 cut(s)	936
BcoDI	GTCTC	4 cut(s)	438, 443, 937, 948
BfaI	CTAG	2 cut(s)	440, 549
BfmI	CTRYAG	1 cut(s)	598
BglI	GCCNNNNNGGC	1 cut(s)	204
BglII	AGATCT	2 cut(s)	744, 764
BisI	GCNGC	6 cut(s)	196, 333, 336, 434, 459, 1002
BlpI	GCTNAGC	1 cut(s)	246
BlsI	GCNGC	6 cut(s)	197, 334, 337, 435, 460, 1003
Bme1390I	CCNGG	2 cut(s)	839, 936
BmgT120I	GGNCC	1 cut(s)	197
BmrFI	CCNGG	2 cut(s)	839, 936
BmsI	GCATC	2 cut(s)	735, 790
Bpu1102I	GCTNAGC	1 cut(s)	246
BpuEI	CTTGAG	2 cut(s)	69, 455
BpuMI	CCSGG	1 cut(s)	936
Bsa29I	ATCGAT	1 cut(s)	186
BsaAI	YACGTR	1 cut(s)	970
BsaI	GGTCTC	2 cut(s)	937, 948
BsaWI	WCCGGW	2 cut(s)	311, 356
Bsc4I	CCNNNNNNNGG	2 cut(s)	708, 867
Bse118I	RCCGGY	2 cut(s)	203, 356
Bse3DI	GCAATG	1 cut(s)	967
BseAI	TCCGGA	1 cut(s)	311
BseBI	CCWGG	1 cut(s)	839
BseCI	ATCGAT	1 cut(s)	186
BseGI	GGATG	1 cut(s)	896
BseLI	CCNNNNNNNGG	2 cut(s)	708, 867
BseMI	GCAATG	1 cut(s)	967
BseMII	CTCAG	2 cut(s)	237, 747
BseX3I	CGGCCG	1 cut(s)	205
BseXI	GCAGC	4 cut(s)	322, 344, 445, 470
BseYI	CCCAGC	1 cut(s)	606
BsgI	GTGCAG	2 cut(s)	452, 477
Bsh1236I	CGCG	2 cut(s)	686, 887
Bsh1285I	CGRYCG	2 cut(s)	208, 361
BshFI	GGCC	2 cut(s)	198, 207
BshTI	ACCGGT	1 cut(s)	356
BshVI	ATCGAT	1 cut(s)	186
BsiEI	CGRYCG	2 cut(s)	208, 361
BsiSI	CCGG	4 cut(s)	204, 312, 357, 935
BsiWI	CGTACG	1 cut(s)	966
BslFI	GGGAC	4 cut(s)	384, 684, 951, 992
BslI	CCNNNNNNNGG	2 cut(s)	708, 867
BsmAI	GTCTC	4 cut(s)	438, 443, 937, 948
BsmBI	CGTCTC	1 cut(s)	438
BsmFI	GGGAC	4 cut(s)	384, 684, 951, 992
BsmI	GAATGC	1 cut(s)	916
BsnI	GGCC	2 cut(s)	198, 207
Bso31I	GGTCTC	2 cut(s)	937, 948
Bsp1286I	GDGCHC	1 cut(s)	637
Bsp13I	TCCGGA	1 cut(s)	311
Bsp1720I	GCTNAGC	1 cut(s)	246
BspACI	CCGC	7 cut(s)	195, 330, 724, 887, 897, 958, 1002
BspANI	GGCC	2 cut(s)	198, 207
BspCNI	CTCAG	2 cut(s)	238, 746
BspDI	ATCGAT	1 cut(s)	186
BspEI	TCCGGA	1 cut(s)	311
BspFNI	CGCG	2 cut(s)	686, 887
BspPI	GGATC	1 cut(s)	156
BspTNI	GGTCTC	2 cut(s)	937, 948
BsrDI	GCAATG	1 cut(s)	967
BsrFI	RCCGGY	2 cut(s)	203, 356
BssAI	RCCGGY	2 cut(s)	203, 356
BssSI	CACGAG	1 cut(s)	453
Bst2BI	CACGAG	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	839
Bst4CI	ACNGT	7 cut(s)	143, 182, 232, 289, 418, 707, 948
Bst6I	CTCTTC	1 cut(s)	550
BstAPI	GCANNNNNTGC	1 cut(s)	430
BstBAI	YACGTR	1 cut(s)	970
BstC8I	GCNNGC	3 cut(s)	690, 694, 1080
BstDEI	CTNAG	3 cut(s)	246, 733, 761
BstF5I	GGATG	1 cut(s)	896
BstFNI	CGCG	2 cut(s)	686, 887
BstHHI	GCGC	1 cut(s)	688
BstMAI	GTCTC	4 cut(s)	438, 443, 937, 948
BstMCI	CGRYCG	2 cut(s)	208, 361
BstMWI	GCNNNNNNNGC	7 cut(s)	204, 332, 430, 723, 1043, 1052, 1084
BstNI	CCWGG	1 cut(s)	839
BstNSI	RCATGY	1 cut(s)	930
BstSCI	CCNGG	2 cut(s)	837, 934
BstSFI	CTRYAG	1 cut(s)	598
BstUI	CGCG	2 cut(s)	686, 887
BstV1I	GCAGC	4 cut(s)	322, 344, 445, 470
BstX2I	RGATCY	3 cut(s)	161, 744, 764
BstYI	RGATCY	3 cut(s)	161, 744, 764
BstZI	CGGCCG	1 cut(s)	205
Bsu15I	ATCGAT	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	198, 207
BsuTUI	ATCGAT	1 cut(s)	186
BtgZI	GCGATG	1 cut(s)	1000
BtsCI	GGATG	1 cut(s)	896
Cac8I	GCNNGC	3 cut(s)	690, 694, 1080
CaiI	CAGNNNCTG	1 cut(s)	338
CfoI	GCGC	1 cut(s)	688
Cfr10I	RCCGGY	2 cut(s)	203, 356
Cfr13I	GGNCC	1 cut(s)	197
ClaI	ATCGAT	1 cut(s)	186
CseI	GACGC	2 cut(s)	989, 1061
Csp6I	GTAC	3 cut(s)	280, 967, 1030
CspAI	ACCGGT	1 cut(s)	356
CviAII	CATG	4 cut(s)	93, 529, 844, 927
CviQI	GTAC	3 cut(s)	280, 967, 1030
DdeI	CTNAG	3 cut(s)	246, 733, 761
EaeI	YGGCCR	1 cut(s)	205
EagI	CGGCCG	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	550
EarI	CTCTTC	1 cut(s)	550
EclXI	CGGCCG	1 cut(s)	205
Eco24I	GRGCYC	1 cut(s)	637
Eco31I	GGTCTC	2 cut(s)	937, 948
Eco52I	CGGCCG	1 cut(s)	205
Eco57I	CTGAAG	2 cut(s)	1017, 1032
EcoRII	CCWGG	1 cut(s)	837
EcoT22I	ATGCAT	1 cut(s)	619
EcoT38I	GRGCYC	1 cut(s)	637
Esp3I	CGTCTC	1 cut(s)	438
FaeI	CATG	4 cut(s)	96, 532, 847, 930
FaiI	YATR	8 cut(s)	94, 530, 622, 630, 828, 845, 928, 1064
FaqI	GGGAC	4 cut(s)	384, 684, 951, 992
FatI	CATG	4 cut(s)	92, 528, 843, 926
FauI	CCCGC	1 cut(s)	880
FbaI	TGATCA	3 cut(s)	775, 846, 1011
FblI	GTMKAC	2 cut(s)	361, 720
Fnu4HI	GCNGC	6 cut(s)	196, 333, 336, 434, 459, 1002
FokI	GGATG	1 cut(s)	903
FriOI	GRGCYC	1 cut(s)	637
Fsp4HI	GCNGC	6 cut(s)	196, 333, 336, 434, 459, 1002
FspBI	CTAG	2 cut(s)	440, 549
GlaI	GCGC	1 cut(s)	687
GluI	GCNGC	6 cut(s)	196, 333, 336, 434, 459, 1002
GsaI	CCCAGC	1 cut(s)	610
HaeIII	GGCC	2 cut(s)	198, 207
HapII	CCGG	4 cut(s)	204, 312, 357, 935
HgaI	GACGC	2 cut(s)	989, 1061
HhaI	GCGC	1 cut(s)	688
Hin1II	CATG	4 cut(s)	96, 532, 847, 930
Hin6I	GCGC	1 cut(s)	686
HinP1I	GCGC	1 cut(s)	686
HincII	GTYRAC	3 cut(s)	124, 319, 362
HindII	GTYRAC	3 cut(s)	124, 319, 362
HindIII	AAGCTT	1 cut(s)	382
HinfI	GANTC	3 cut(s)	113, 342, 451
HpaI	GTTAAC	1 cut(s)	319
HpaII	CCGG	4 cut(s)	204, 312, 357, 935
HphI	GGTGA	3 cut(s)	122, 785, 980
Hpy166II	GTNNAC	6 cut(s)	124, 319, 362, 392, 721, 932
Hpy188I	TCNGA	2 cut(s)	347, 1051
Hpy188III	TCNNGA	3 cut(s)	312, 472, 701
Hpy8I	GTNNAC	6 cut(s)	124, 319, 362, 392, 721, 932
Hpy99I	CGWCG	1 cut(s)	707
HpyCH4III	ACNGT	7 cut(s)	143, 182, 232, 289, 418, 707, 948
HpyCH4IV	ACGT	2 cut(s)	536, 969
HpyCH4V	TGCA	7 cut(s)	158, 433, 458, 617, 647, 803, 1037
HpyF10VI	GCNNNNNNNGC	7 cut(s)	204, 332, 430, 723, 1043, 1052, 1084
HpyF3I	CTNAG	3 cut(s)	246, 733, 761
HpySE526I	ACGT	2 cut(s)	536, 969
Hsp92II	CATG	4 cut(s)	96, 532, 847, 930
HspAI	GCGC	1 cut(s)	686
Kpn2I	TCCGGA	1 cut(s)	311
Ksp22I	TGATCA	3 cut(s)	775, 846, 1011
KspAI	GTTAAC	1 cut(s)	319
LmnI	GCTCC	1 cut(s)	662
Lsp1109I	GCAGC	4 cut(s)	322, 344, 445, 470
LweI	GCATC	2 cut(s)	735, 790
MaeI	CTAG	2 cut(s)	440, 549
MaeII	ACGT	2 cut(s)	536, 969
MaeIII	GTNAC	3 cut(s)	8, 110, 877
MboII	GAAGA	3 cut(s)	362, 537, 739
MfeI	CAATTG	1 cut(s)	365
MflI	RGATCY	3 cut(s)	161, 744, 764
MhlI	GDGCHC	1 cut(s)	637
MluCI	AATT	4 cut(s)	166, 365, 557, 657
MlyI	GAGTC	2 cut(s)	107, 445
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	2 cut(s)	479, 900
Mph1103I	ATGCAT	1 cut(s)	619
MroI	TCCGGA	1 cut(s)	311
MseI	TTAA	3 cut(s)	14, 261, 318
MslI	CAYNNNNRTG	1 cut(s)	798
MspA1I	CMGCKG	2 cut(s)	335, 461
MspI	CCGG	4 cut(s)	204, 312, 357, 935
MspR9I	CCNGG	2 cut(s)	839, 936
MunI	CAATTG	1 cut(s)	365
Mva1269I	GAATGC	1 cut(s)	916
MvaI	CCWGG	1 cut(s)	839
MvnI	CGCG	2 cut(s)	686, 887
MwoI	GCNNNNNNNGC	7 cut(s)	204, 332, 430, 723, 1043, 1052, 1084
NciI	CCSGG	1 cut(s)	936
NlaIII	CATG	4 cut(s)	96, 532, 847, 930
NmuCI	GTSAC	2 cut(s)	110, 877
NsiI	ATGCAT	1 cut(s)	619
NspI	RCATGY	1 cut(s)	930
PciI	ACATGT	1 cut(s)	926
PctI	GAATGC	1 cut(s)	916
PfeI	GAWTC	1 cut(s)	342
Pfl23II	CGTACG	1 cut(s)	966
PfoI	TCCNGGA	1 cut(s)	837
PinAI	ACCGGT	1 cut(s)	356
PkrI	GCNGC	6 cut(s)	197, 334, 337, 435, 460, 1003
PleI	GAGTC	2 cut(s)	107, 445
PpsI	GAGTC	2 cut(s)	107, 445
Ppu21I	YACGTR	1 cut(s)	970
PscI	ACATGT	1 cut(s)	926
Psp6I	CCWGG	1 cut(s)	837
PspFI	CCCAGC	1 cut(s)	606
PspGI	CCWGG	1 cut(s)	837
PspLI	CGTACG	1 cut(s)	966
PspPI	GGNCC	1 cut(s)	197
PstNI	CAGNNNCTG	1 cut(s)	338
PsuI	RGATCY	3 cut(s)	161, 744, 764
PvuII	CAGCTG	2 cut(s)	335, 461
RsaI	GTAC	3 cut(s)	281, 968, 1031
RsaNI	GTAC	3 cut(s)	280, 967, 1030
RseI	CAYNNNNRTG	1 cut(s)	798
SalI	GTCGAC	1 cut(s)	360
SaqAI	TTAA	3 cut(s)	14, 261, 318
SatI	GCNGC	6 cut(s)	196, 333, 336, 434, 459, 1002
Sau96I	GGNCC	1 cut(s)	197
SchI	GAGTC	2 cut(s)	107, 445
ScrFI	CCNGG	2 cut(s)	839, 936
SduI	GDGCHC	1 cut(s)	637
SfaNI	GCATC	2 cut(s)	735, 790
SfcI	CTRYAG	1 cut(s)	598
SfiI	GGCCNNNNNGGCC	1 cut(s)	204
SmiMI	CAYNNNNRTG	1 cut(s)	798
SmlI	CTYRAG	2 cut(s)	84, 470
SmoI	CTYRAG	2 cut(s)	84, 470
Sse9I	AATT	4 cut(s)	166, 365, 557, 657
SsiI	CCGC	7 cut(s)	195, 330, 724, 887, 897, 958, 1002
SspMI	CTAG	2 cut(s)	440, 549
StyD4I	CCNGG	2 cut(s)	837, 934
TaaI	ACNGT	7 cut(s)	143, 182, 232, 289, 418, 707, 948
TaiI	ACGT	2 cut(s)	539, 972
TaqI	TCGA	3 cut(s)	186, 361, 637
TasI	AATT	4 cut(s)	166, 365, 557, 657
TauI	GCSGC	2 cut(s)	198, 1004
TfiI	GAWTC	1 cut(s)	342
Tru1I	TTAA	3 cut(s)	14, 261, 318
Tru9I	TTAA	3 cut(s)	14, 261, 318
TseFI	GTSAC	2 cut(s)	110, 877
TseI	GCWGC	4 cut(s)	332, 335, 433, 458
Tsp45I	GTSAC	2 cut(s)	110, 877
TspDTI	ATGAA	2 cut(s)	517, 799
XceI	RCATGY	1 cut(s)	930
XmiI	GTMKAC	2 cut(s)	361, 720
XspI	CTAG	2 cut(s)	440, 549
Zsp2I	ATGCAT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.