Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0014308

Physical Location & Seq

Genomic Coordinates Reverse (-)

3484080 .. 3487041

Gene Structure 2962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G071100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGTGAACAAAATGTGGGCGGTGTGTGTGGTTGTGGTTTTGGCGTTGAACTTGTGGTGCAATATTGGGGTTAGAGCTGCACCACAAGTGCCTTGCTACTTCATATTTGGAGACTCCTTGGTCGATAATGGCAATAATAACCAGCTTCAGTCCTTGGCCAGAGCTGATTATTTGCCTTATGGGATCGACTTTGGTGGACCTACTGGAAGATTTTCCAACGGCAAAACCACTGTTGATGTTGTTGCTGAGCTTTTGGGTTTTGATGATTATATTCCACCCTATGCAACTGCTAGAGGCCAAGACATACTCAAAGGAGTAAACTTTGCATCTGCAGCTGCTGGGATTAGAGAGGAAACTGGACGTCAATTGGGAGGCCGGATTACATTTAGTGGTCAGGTAAAGAATTACCAGAACGTAGTGTCCCAAGTTGTAAACTTACTTGGCGATGAGGACCAAGCTGCAAATTATCTGGGCAAATGCATATACTCAGTTGGGTTAGGCAGCAACGATTACCTCAACAACTATTTCATGCCACAATTTTACTCCACCGGCAACCAATTTACTACCGAGGAATATGCTACTTCTCTTATCCAAGATTACAGTCAGCAACTAAGGATTTTGTACAATTATGGAGCAAGGAAGATTGTGTTGTTTGGAATTGGTCAAATAGGTTGCAGTCCAAATGAATTGGCCCAAAATAGCCCAGATGGTGCATCATGCGTAGAAAAAATAAACTCCGCAAACCAAATTTTCAATAGCAAGCTGAAGGCACTTGCCAATGAATTCAACACTAATCTATCAGATGCAAGAGTTATCTTCGTAGACTCTTATGGCATTTTCCAGGACATAATAACCAGCCCTGCACAATATGGATTTAGAGTTACAAACGCAGGGTGCTGTGGGGTAGGGAGGAACAATGGCCAAATTACATGTCTTCCTCTCCAAACTCCATGCCAAAATAGGAATGAGTATCTGTTTTGGGATGCATTTCATCCAACTGAGGCCGGAAACAACGTCGTAGCAAGGAGAGCATACAGCGCTGTTCGTCCCTCGGACGCTTACCCTGTCGATATTCGCCGGCTCGCTCTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0030312 GO:0031976 GO:0031984 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

365

Amino Acids

39.91

Weight (kDa)

5.34

Isoelectric Point (pI)

30.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29670 AT1G29670 AT5G45670
fragaria_vesca	FvH4_3g06610
malus_domestica	MD00G1093600.v1.1 MD10G1270600.v1.1
prunus_persica	Prupe.4G071100_v2.0.a1
pyrus_communis	pycom05g27060 pycom10g22640
rosa_chinensis	RchiOBHm_Chr5g0012531
rosa_laevigata	RLG00000031922
rosa_multiflora	Rmu_sc0001889.1_g000034
rosa_roxburghii	Rroxscaffold_1G00064160
rosa_rugosa	Rorug05G0002200
rosa_samantha	Rh5AG096200 Rh5CG105300
rosa_wichuraiana	Rw5G008420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
AatII	GACGTC	1 cut(s)	364
AccI	GTMKAC	1 cut(s)	822
AciI	CCGC	2 cut(s)	20, 738
AclWI	GGATC	1 cut(s)	191
AcoI	YGGCCR	2 cut(s)	156, 919
AcsI	RAATTY	2 cut(s)	747, 782
AcuI	CTGAAG	2 cut(s)	131, 785
AcyI	GRCGYC	1 cut(s)	361
AfaI	GTAC	1 cut(s)	623
AfeI	AGCGCT	1 cut(s)	1039
AflIII	ACRYGT	1 cut(s)	929
AgsI	TTSAA	3 cut(s)	49, 754, 787
AjnI	CCWGG	1 cut(s)	840
AloI	GAACNNNNNNTCC	2 cut(s)	404, 436
AluBI	AGCT	7 cut(s)	77, 145, 164, 250, 335, 458, 763
AluI	AGCT	7 cut(s)	77, 145, 164, 250, 335, 458, 763
Alw26I	GTCTC	1 cut(s)	105
AlwI	GGATC	1 cut(s)	191
AlwNI	CAGNNNCTG	1 cut(s)	338
Aor51HI	AGCGCT	1 cut(s)	1039
AoxI	GGCC	6 cut(s)	156, 295, 373, 690, 919, 1002
ApeKI	GCWGC	5 cut(s)	77, 332, 335, 458, 501
ApoI	RAATTY	2 cut(s)	747, 782
ArsI	GACNNNNNNTTYG	2 cut(s)	916, 948
Asp700I	GAANNNNTTC	1 cut(s)	211
AspLEI	GCGC	1 cut(s)	1040
AspS9I	GGNCC	3 cut(s)	197, 451, 691
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	2 cut(s)	197, 451
BalI	TGGCCA	2 cut(s)	158, 921
BbsI	GAAGAC	1 cut(s)	926
BbvI	GCAGC	5 cut(s)	64, 322, 344, 445, 513
BccI	CCATC	1 cut(s)	701
BceAI	ACGGC	1 cut(s)	235
BcgI	CGANNNNNNTGC	2 cut(s)	557, 591
BciT130I	CCWGG	1 cut(s)	842
BcoDI	GTCTC	1 cut(s)	105
BfaI	CTAG	1 cut(s)	291
BfmI	CTRYAG	1 cut(s)	330
BfoI	RGCGCY	1 cut(s)	1041
BisI	GCNGC	5 cut(s)	78, 333, 336, 459, 502
BlpI	GCTNAGC	1 cut(s)	246
BlsI	GCNGC	5 cut(s)	79, 334, 337, 460, 503
Bme1390I	CCNGG	1 cut(s)	842
Bme18I	GGWCC	2 cut(s)	197, 451
BmgT120I	GGNCC	3 cut(s)	197, 451, 691
BmrFI	CCNGG	1 cut(s)	842
BmsI	GCATC	4 cut(s)	335, 722, 793, 973
BpiI	GAAGAC	1 cut(s)	926
Bpu1102I	GCTNAGC	1 cut(s)	246
BsaHI	GRCGYC	1 cut(s)	361
BsaJI	CCNNGG	4 cut(s)	117, 153, 567, 1050
Bse118I	RCCGGY	2 cut(s)	548, 1077
Bse1I	ACTGG	2 cut(s)	208, 361
BseBI	CCWGG	1 cut(s)	842
BseDI	CCNNGG	4 cut(s)	117, 153, 567, 1050
BseGI	GGATG	2 cut(s)	988, 991
BseMII	CTCAG	3 cut(s)	237, 501, 990
BseNI	ACTGG	2 cut(s)	208, 361
BseXI	GCAGC	5 cut(s)	64, 322, 344, 445, 513
BseYI	CCCAGC	1 cut(s)	338
BsgI	GTGCAG	2 cut(s)	63, 846
BshFI	GGCC	6 cut(s)	158, 297, 375, 692, 921, 1004
BsiSI	CCGG	4 cut(s)	376, 549, 1005, 1078
BslFI	GGGAC	2 cut(s)	406, 1032
BsmAI	GTCTC	1 cut(s)	105
BsmFI	GGGAC	2 cut(s)	406, 1032
BsnI	GGCC	6 cut(s)	158, 297, 375, 692, 921, 1004
Bsp1407I	TGTACA	1 cut(s)	621
Bsp143I	GATC	1 cut(s)	183
Bsp1720I	GCTNAGC	1 cut(s)	246
BspACI	CCGC	2 cut(s)	20, 738
BspANI	GGCC	6 cut(s)	158, 297, 375, 692, 921, 1004
BspCNI	CTCAG	3 cut(s)	238, 500, 991
BspMAI	CTGCAG	1 cut(s)	334
BspPI	GGATC	1 cut(s)	191
BsrFI	RCCGGY	2 cut(s)	548, 1077
BsrGI	TGTACA	1 cut(s)	621
BsrI	ACTGG	2 cut(s)	208, 361
BssAI	RCCGGY	2 cut(s)	548, 1077
BssECI	CCNNGG	4 cut(s)	117, 153, 567, 1050
BssMI	GATC	1 cut(s)	183
BssNI	GRCGYC	1 cut(s)	361
BssT1I	CCWWGG	2 cut(s)	117, 153
Bst2UI	CCWGG	1 cut(s)	842
Bst4CI	ACNGT	2 cut(s)	232, 602
BstACI	GRCGYC	1 cut(s)	361
BstAUI	TGTACA	1 cut(s)	621
BstC8I	GCNNGC	3 cut(s)	761, 1079, 1083
BstDEI	CTNAG	4 cut(s)	246, 487, 611, 999
BstF5I	GGATG	2 cut(s)	988, 991
BstH2I	RGCGCY	1 cut(s)	1041
BstHHI	GCGC	1 cut(s)	1040
BstKTI	GATC	1 cut(s)	186
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	1 cut(s)	183
BstMWI	GCNNNNNNNGC	4 cut(s)	332, 1028, 1037, 1087
BstNI	CCWGG	1 cut(s)	842
BstNSI	RCATGY	1 cut(s)	933
BstSCI	CCNGG	1 cut(s)	840
BstSFI	CTRYAG	1 cut(s)	330
BstV1I	GCAGC	5 cut(s)	64, 322, 344, 445, 513
BstV2I	GAAGAC	1 cut(s)	926
BsuRI	GGCC	6 cut(s)	158, 297, 375, 692, 921, 1004
BtgZI	GCGATG	1 cut(s)	459
BtsCI	GGATG	2 cut(s)	988, 991
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	3 cut(s)	761, 1079, 1083
CaiI	CAGNNNCTG	1 cut(s)	338
CfoI	GCGC	1 cut(s)	1040
Cfr10I	RCCGGY	2 cut(s)	548, 1077
Cfr13I	GGNCC	3 cut(s)	197, 451, 691
CseI	GACGC	1 cut(s)	1064
Csp6I	GTAC	1 cut(s)	622
CviAII	CATG	4 cut(s)	529, 717, 930, 951
CviQI	GTAC	1 cut(s)	622
DdeI	CTNAG	4 cut(s)	246, 487, 611, 999
DpnI	GATC	1 cut(s)	185
DpnII	GATC	1 cut(s)	183
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
EaeI	YGGCCR	2 cut(s)	156, 919
Eco130I	CCWWGG	2 cut(s)	117, 153
Eco47I	GGWCC	2 cut(s)	197, 451
Eco47III	AGCGCT	1 cut(s)	1039
Eco57I	CTGAAG	2 cut(s)	131, 785
EcoRI	GAATTC	1 cut(s)	782
EcoRII	CCWGG	1 cut(s)	840
EcoT14I	CCWWGG	2 cut(s)	117, 153
EcoT22I	ATGCAT	2 cut(s)	482, 988
ErhI	CCWWGG	2 cut(s)	117, 153
FaeI	CATG	4 cut(s)	532, 720, 933, 954
FaqI	GGGAC	2 cut(s)	406, 1032
FatI	CATG	4 cut(s)	528, 716, 929, 950
FblI	GTMKAC	1 cut(s)	822
Fnu4HI	GCNGC	5 cut(s)	78, 333, 336, 459, 502
FokI	GGATG	2 cut(s)	978, 995
Fsp4HI	GCNGC	5 cut(s)	78, 333, 336, 459, 502
FspBI	CTAG	1 cut(s)	291
GlaI	GCGC	1 cut(s)	1039
GluI	GCNGC	5 cut(s)	78, 333, 336, 459, 502
GsaI	CCCAGC	1 cut(s)	342
HaeII	RGCGCY	1 cut(s)	1041
HaeIII	GGCC	6 cut(s)	158, 297, 375, 692, 921, 1004
HapII	CCGG	4 cut(s)	376, 549, 1005, 1078
HgaI	GACGC	1 cut(s)	1064
HhaI	GCGC	1 cut(s)	1040
Hin1I	GRCGYC	1 cut(s)	361
Hin1II	CATG	4 cut(s)	532, 720, 933, 954
Hin6I	GCGC	1 cut(s)	1038
HinP1I	GCGC	1 cut(s)	1038
HinfI	GANTC	2 cut(s)	113, 824
HpaII	CCGG	4 cut(s)	376, 549, 1005, 1078
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	5 cut(s)	7, 197, 319, 433, 823
Hpy188I	TCNGA	2 cut(s)	802, 1054
Hpy8I	GTNNAC	5 cut(s)	7, 197, 319, 433, 823
Hpy99I	CGWCG	1 cut(s)	1019
HpyAV	CCTTC	1 cut(s)	760
HpyCH4III	ACNGT	2 cut(s)	232, 602
HpyCH4IV	ACGT	3 cut(s)	361, 414, 1014
HpyF10VI	GCNNNNNNNGC	4 cut(s)	332, 1028, 1037, 1087
HpyF3I	CTNAG	4 cut(s)	246, 487, 611, 999
HpySE526I	ACGT	3 cut(s)	361, 414, 1014
Hsp92I	GRCGYC	1 cut(s)	361
Hsp92II	CATG	4 cut(s)	532, 720, 933, 954
HspAI	GCGC	1 cut(s)	1038
KroI	GCCGGC	1 cut(s)	1077
KroNI	GCCGGC	1 cut(s)	1079
Kzo9I	GATC	1 cut(s)	183
LmnI	GCTCC	1 cut(s)	632
Lsp1109I	GCAGC	5 cut(s)	64, 322, 344, 445, 513
LweI	GCATC	4 cut(s)	335, 722, 793, 973
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	3 cut(s)	361, 414, 1014
MaeIII	GTNAC	1 cut(s)	880
MalI	GATC	1 cut(s)	185
MboI	GATC	1 cut(s)	183
MboII	GAAGA	4 cut(s)	219, 652, 808, 926
MfeI	CAATTG	1 cut(s)	365
MlsI	TGGCCA	2 cut(s)	158, 921
MluNI	TGGCCA	2 cut(s)	158, 921
MlyI	GAGTC	2 cut(s)	107, 818
MmeI	TCCRAC	2 cut(s)	240, 1019
Mox20I	TGGCCA	2 cut(s)	158, 921
Mph1103I	ATGCAT	2 cut(s)	482, 988
MroNI	GCCGGC	1 cut(s)	1077
MroXI	GAANNNNTTC	1 cut(s)	211
MscI	TGGCCA	2 cut(s)	158, 921
MseI	TTAA	1 cut(s)	1093
Msp20I	TGGCCA	2 cut(s)	158, 921
MspA1I	CMGCKG	1 cut(s)	335
MspI	CCGG	4 cut(s)	376, 549, 1005, 1078
MspR9I	CCNGG	1 cut(s)	842
MunI	CAATTG	1 cut(s)	365
MvaI	CCWGG	1 cut(s)	842
MwoI	GCNNNNNNNGC	4 cut(s)	332, 1028, 1037, 1087
NaeI	GCCGGC	1 cut(s)	1079
NdeII	GATC	1 cut(s)	183
NgoMIV	GCCGGC	1 cut(s)	1077
NlaIII	CATG	4 cut(s)	532, 720, 933, 954
NsiI	ATGCAT	2 cut(s)	482, 988
NspI	RCATGY	1 cut(s)	933
PciI	ACATGT	1 cut(s)	929
PdiI	GCCGGC	1 cut(s)	1079
PdmI	GAANNNNTTC	1 cut(s)	211
PfoI	TCCNGGA	1 cut(s)	840
PkrI	GCNGC	5 cut(s)	79, 334, 337, 460, 503
PleI	GAGTC	2 cut(s)	107, 818
PpsI	GAGTC	2 cut(s)	107, 818
PscI	ACATGT	1 cut(s)	929
Psp6I	CCWGG	1 cut(s)	840
PspFI	CCCAGC	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	840
PspPI	GGNCC	3 cut(s)	197, 451, 691
PstI	CTGCAG	1 cut(s)	334
PstNI	CAGNNNCTG	1 cut(s)	338
PvuII	CAGCTG	1 cut(s)	335
RsaI	GTAC	1 cut(s)	623
RsaNI	GTAC	1 cut(s)	622
SaqAI	TTAA	1 cut(s)	1093
SatI	GCNGC	5 cut(s)	78, 333, 336, 459, 502
Sau3AI	GATC	1 cut(s)	183
Sau96I	GGNCC	3 cut(s)	197, 451, 691
SchI	GAGTC	2 cut(s)	107, 818
ScrFI	CCNGG	1 cut(s)	842
SfaNI	GCATC	4 cut(s)	335, 722, 793, 973
SfcI	CTRYAG	1 cut(s)	330
SinI	GGWCC	2 cut(s)	197, 451
SsiI	CCGC	2 cut(s)	20, 738
SspI	AATATT	1 cut(s)	64
SspMI	CTAG	1 cut(s)	291
StyD4I	CCNGG	1 cut(s)	840
StyI	CCWWGG	2 cut(s)	117, 153
TaaI	ACNGT	2 cut(s)	232, 602
TaiI	ACGT	3 cut(s)	364, 417, 1017
TaqI	TCGA	3 cut(s)	123, 186, 1068
TatI	WGTACW	1 cut(s)	621
Tru1I	TTAA	1 cut(s)	1093
Tru9I	TTAA	1 cut(s)	1093
TscAI	CASTG	1 cut(s)	235
TseI	GCWGC	5 cut(s)	77, 332, 335, 458, 501
TspDTI	ATGAA	5 cut(s)	91, 517, 699, 795, 980
TspRI	CASTG	1 cut(s)	235
VpaK11BI	GGWCC	2 cut(s)	197, 451
XapI	RAATTY	2 cut(s)	747, 782
XceI	RCATGY	1 cut(s)	933
XmiI	GTMKAC	1 cut(s)	822
XmnI	GAANNNNTTC	1 cut(s)	211
XspI	CTAG	1 cut(s)	291
ZraI	GACGTC	1 cut(s)	362
Zsp2I	ATGCAT	2 cut(s)	482, 988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.