Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0014308

Physical Location & Seq

Genomic Coordinates Forward (+)

24970915 .. 24973846

Gene Structure 2932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g22640.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGATGGCGGGAACGGCGAGGAGAATGTGGTTGGTTTCCGTGGTGGTTTTGGCCGTGAGCCTGTGGTGGAGTGGCACTAGGGCTGAACCACAAGTGCCTTGCTACTTCATTTTTGGGGACTCTTTGGTTGACAATGGTAATAACAACCAGCTTCAGTCCTTGGCCAGAGCTGACTACTTGCCTTATGGGGTCGACTTTGGTGGACCAACCGGAAGATTTTCCAACGGAAAAACCACCGTTGATGTTGTTGCTGAGCTTCTGGGTTTTGATGATTTCATCCCTCCCTATGCAACTGCTAGAGGCCAAGATGTACTCAAAGGAGTTAACTTTGCATCTGCAGCTGCTGGAATTAGAGAGGAAACTGGACGCCAATTGGGTGATCGGATTACATTTAGTGGTCAGGTAAAGAATTACCAAAACACAGTGTCTCAAGTGGTCAACTTACTAGGTGATGAGGACCAAGCTGCAAATTATCTGAGCAAATGCATATACTCAGTTGGATTAGGCAGCAACGATTACCTTAACAACTATTTCATGCCCCAGTTTTACTCCACCGGCAACCAATTTACCCCGGAGGAATATGCTGATTCGCTCATTCACGATTACGGTCAACAGCTGACGATTTTGTACAATTATGGAGCAAGGAAGGTTGTGTTGTTTGGAATTGGTCAAATAGGTTGCAGTCCAAATGAATTGGCACAAAATAGCCCAGATGGTTCTTCATGCGTACAAAAAATAAACTCTGCAAACCAAATTTTCAATAGCAAGCTCAAGGCACTTGCCAATGAATTCAACACTAATCTAGCAGATGCAAGATTTATCTTCGTAGACTCTTATGGCATTTTCCAGGACATAATAAGCAACCCTGCACAATATGGATTTAGAGTTACAAACGCAGGGTGCTGTGGGGTAGGGAGGAACAATGGCCAAATTACATGTCTTCCTTTCCAAACTCCATGCCAAAATAGGGATGAGTATCTATTTTGGGATGCATTTCATCCAACTGAAGCTGGCAATGCTGTTGTAGCAAGGAGAGCATACAGCGCCGTTCAGGCCTCGGACGCTTACCCTGTCGATATACGCCGGCTTGCCCTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0030312 GO:0031976 GO:0031984 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

367

Amino Acids

40.17

Weight (kDa)

4.95

Isoelectric Point (pI)

25.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29670 AT1G29670 AT5G45670
fragaria_vesca	FvH4_3g06610
malus_domestica	MD00G1093600.v1.1 MD10G1270600.v1.1
prunus_persica	Prupe.4G071100_v2.0.a1
pyrus_communis	pycom05g27060 pycom10g22640
rosa_chinensis	RchiOBHm_Chr5g0012531
rosa_laevigata	RLG00000031922
rosa_multiflora	Rmu_sc0001889.1_g000034
rosa_roxburghii	Rroxscaffold_1G00064160
rosa_rugosa	Rorug05G0002200
rosa_samantha	Rh5AG096200 Rh5CG105300
rosa_wichuraiana	Rw5G008420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	192, 828
AciI	CCGC	1 cut(s)	8
AcoI	YGGCCR	3 cut(s)	51, 162, 925
AcsI	RAATTY	2 cut(s)	753, 788
AcuI	CTGAAG	2 cut(s)	137, 1026
AcyI	GRCGYC	1 cut(s)	367
AfaI	GTAC	3 cut(s)	312, 629, 729
AfiI	CCNNNNNNNGG	1 cut(s)	967
AflIII	ACRYGT	1 cut(s)	935
AgsI	TTSAA	2 cut(s)	760, 793
AjnI	CCWGG	1 cut(s)	846
AluBI	AGCT	8 cut(s)	151, 170, 256, 341, 464, 616, 769, 1010
AluI	AGCT	8 cut(s)	151, 170, 256, 341, 464, 616, 769, 1010
Alw26I	GTCTC	1 cut(s)	432
AlwNI	CAGNNNCTG	1 cut(s)	344
AoxI	GGCC	5 cut(s)	51, 162, 301, 925, 1053
ApeKI	GCWGC	4 cut(s)	338, 341, 464, 507
ApoI	RAATTY	2 cut(s)	753, 788
ArsI	GACNNNNNNTTYG	2 cut(s)	922, 954
Asp700I	GAANNNNTTC	1 cut(s)	217
AspLEI	GCGC	1 cut(s)	1046
AspS9I	GGNCC	2 cut(s)	203, 457
AsuC2I	CCSGG	1 cut(s)	572
AsuHPI	GGTGA	2 cut(s)	389, 461
AvaII	GGWCC	2 cut(s)	203, 457
BalI	TGGCCA	2 cut(s)	164, 927
BbsI	GAAGAC	1 cut(s)	932
BbvI	GCAGC	4 cut(s)	328, 350, 451, 519
BccI	CCATC	1 cut(s)	707
BceAI	ACGGC	3 cut(s)	30, 38, 1031
BciT130I	CCWGG	1 cut(s)	848
BcnI	CCSGG	1 cut(s)	572
BcoDI	GTCTC	1 cut(s)	432
BfaI	CTAG	4 cut(s)	78, 297, 446, 803
BfmI	CTRYAG	1 cut(s)	336
BfoI	RGCGCY	1 cut(s)	1047
BglI	GCCNNNNNGGC	1 cut(s)	1052
BisI	GCNGC	4 cut(s)	339, 342, 465, 508
BlpI	GCTNAGC	1 cut(s)	252
BlsI	GCNGC	4 cut(s)	340, 343, 466, 509
Bme1390I	CCNGG	2 cut(s)	572, 848
Bme18I	GGWCC	2 cut(s)	203, 457
BmgT120I	GGNCC	2 cut(s)	203, 457
BmrFI	CCNGG	2 cut(s)	572, 848
BmrI	ACTGGG	1 cut(s)	535
BmsI	GCATC	3 cut(s)	341, 799, 979
BmuI	ACTGGG	1 cut(s)	535
BpiI	GAAGAC	1 cut(s)	932
Bpu1102I	GCTNAGC	1 cut(s)	252
BpuEI	CTTGAG	2 cut(s)	414, 755
BpuMI	CCSGG	1 cut(s)	572
BsaBI	GATNNNNATC	1 cut(s)	975
BsaHI	GRCGYC	1 cut(s)	367
BsaJI	CCNNGG	4 cut(s)	39, 159, 570, 1056
BsaWI	WCCGGW	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	1 cut(s)	967
Bse118I	RCCGGY	2 cut(s)	554, 1083
Bse1I	ACTGG	2 cut(s)	367, 541
Bse3DI	GCAATG	1 cut(s)	1021
Bse8I	GATNNNNATC	1 cut(s)	975
BseBI	CCWGG	1 cut(s)	848
BseDI	CCNNGG	4 cut(s)	39, 159, 570, 1056
BseGI	GGATG	4 cut(s)	276, 976, 994, 997
BseJI	GATNNNNATC	1 cut(s)	975
BseLI	CCNNNNNNNGG	1 cut(s)	967
BseMI	GCAATG	1 cut(s)	1021
BseMII	CTCAG	3 cut(s)	243, 467, 507
BseNI	ACTGG	2 cut(s)	367, 541
BseRI	GAGGAG	1 cut(s)	34
BseXI	GCAGC	4 cut(s)	328, 350, 451, 519
BsgI	GTGCAG	1 cut(s)	852
BshFI	GGCC	5 cut(s)	53, 164, 303, 927, 1055
BsiSI	CCGG	4 cut(s)	210, 555, 572, 1084
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	967
BsmAI	GTCTC	1 cut(s)	432
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	5 cut(s)	53, 164, 303, 927, 1055
Bsp1407I	TGTACA	1 cut(s)	627
Bsp143I	GATC	1 cut(s)	379
Bsp1720I	GCTNAGC	1 cut(s)	252
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	5 cut(s)	53, 164, 303, 927, 1055
BspCNI	CTCAG	3 cut(s)	244, 468, 506
BspMAI	CTGCAG	1 cut(s)	340
BsrDI	GCAATG	1 cut(s)	1021
BsrFI	RCCGGY	2 cut(s)	554, 1083
BsrGI	TGTACA	1 cut(s)	627
BsrI	ACTGG	2 cut(s)	367, 541
BssAI	RCCGGY	2 cut(s)	554, 1083
BssECI	CCNNGG	4 cut(s)	39, 159, 570, 1056
BssMI	GATC	1 cut(s)	379
BssNI	GRCGYC	1 cut(s)	367
BssT1I	CCWWGG	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	848
Bst4CI	ACNGT	3 cut(s)	238, 424, 608
BstACI	GRCGYC	1 cut(s)	367
BstAUI	TGTACA	1 cut(s)	627
BstC8I	GCNNGC	4 cut(s)	767, 1012, 1085, 1089
BstDEI	CTNAG	3 cut(s)	252, 476, 493
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	4 cut(s)	276, 976, 994, 997
BstH2I	RGCGCY	1 cut(s)	1047
BstHHI	GCGC	1 cut(s)	1046
BstKTI	GATC	1 cut(s)	382
BstMAI	GTCTC	1 cut(s)	432
BstMBI	GATC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	8 cut(s)	14, 338, 1016, 1025, 1034, 1043, 1052, 1061
BstNI	CCWGG	1 cut(s)	848
BstNSI	RCATGY	1 cut(s)	939
BstSCI	CCNGG	2 cut(s)	570, 846
BstSFI	CTRYAG	1 cut(s)	336
BstV1I	GCAGC	4 cut(s)	328, 350, 451, 519
BstV2I	GAAGAC	1 cut(s)	932
BsuRI	GGCC	5 cut(s)	53, 164, 303, 927, 1055
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	4 cut(s)	276, 976, 994, 997
BtsIMutI	CAGTG	1 cut(s)	429
Cac8I	GCNNGC	4 cut(s)	767, 1012, 1085, 1089
CaiI	CAGNNNCTG	1 cut(s)	344
CfoI	GCGC	1 cut(s)	1046
Cfr10I	RCCGGY	2 cut(s)	554, 1083
Cfr13I	GGNCC	2 cut(s)	203, 457
CseI	GACGC	2 cut(s)	375, 1070
Csp6I	GTAC	3 cut(s)	311, 628, 728
CviAII	CATG	4 cut(s)	535, 723, 936, 957
CviQI	GTAC	3 cut(s)	311, 628, 728
DdeI	CTNAG	3 cut(s)	252, 476, 493
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
EaeI	YGGCCR	3 cut(s)	51, 162, 925
Eco130I	CCWWGG	1 cut(s)	159
Eco147I	AGGCCT	1 cut(s)	1055
Eco47I	GGWCC	2 cut(s)	203, 457
Eco57I	CTGAAG	2 cut(s)	137, 1026
EcoRI	GAATTC	1 cut(s)	788
EcoRII	CCWGG	1 cut(s)	846
EcoT14I	CCWWGG	1 cut(s)	159
EcoT22I	ATGCAT	2 cut(s)	488, 994
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	4 cut(s)	538, 726, 939, 960
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	4 cut(s)	534, 722, 935, 956
FblI	GTMKAC	2 cut(s)	192, 828
Fnu4HI	GCNGC	4 cut(s)	339, 342, 465, 508
FokI	GGATG	4 cut(s)	263, 983, 984, 1001
Fsp4HI	GCNGC	4 cut(s)	339, 342, 465, 508
FspBI	CTAG	4 cut(s)	78, 297, 446, 803
GlaI	GCGC	1 cut(s)	1045
GluI	GCNGC	4 cut(s)	339, 342, 465, 508
HaeII	RGCGCY	1 cut(s)	1047
HaeIII	GGCC	5 cut(s)	53, 164, 303, 927, 1055
HapII	CCGG	4 cut(s)	210, 555, 572, 1084
HgaI	GACGC	2 cut(s)	375, 1070
HhaI	GCGC	1 cut(s)	1046
Hin1I	GRCGYC	1 cut(s)	367
Hin1II	CATG	4 cut(s)	538, 726, 939, 960
Hin6I	GCGC	1 cut(s)	1044
HinP1I	GCGC	1 cut(s)	1044
HincII	GTYRAC	5 cut(s)	130, 193, 325, 439, 611
HindII	GTYRAC	5 cut(s)	130, 193, 325, 439, 611
HinfI	GANTC	3 cut(s)	119, 587, 830
HpaI	GTTAAC	1 cut(s)	325
HpaII	CCGG	4 cut(s)	210, 555, 572, 1084
HphI	GGTGA	2 cut(s)	389, 461
Hpy166II	GTNNAC	7 cut(s)	130, 193, 203, 325, 439, 611, 829
Hpy188I	TCNGA	3 cut(s)	384, 477, 1060
Hpy188III	TCNNGA	1 cut(s)	599
Hpy8I	GTNNAC	7 cut(s)	130, 193, 203, 325, 439, 611, 829
HpyAV	CCTTC	1 cut(s)	640
HpyCH4III	ACNGT	3 cut(s)	238, 424, 608
HpyF10VI	GCNNNNNNNGC	8 cut(s)	14, 338, 1016, 1025, 1034, 1043, 1052, 1061
HpyF3I	CTNAG	3 cut(s)	252, 476, 493
Hsp92I	GRCGYC	1 cut(s)	367
Hsp92II	CATG	4 cut(s)	538, 726, 939, 960
HspAI	GCGC	1 cut(s)	1044
KroI	GCCGGC	1 cut(s)	1083
KroNI	GCCGGC	1 cut(s)	1085
KspAI	GTTAAC	1 cut(s)	325
Kzo9I	GATC	1 cut(s)	379
LmnI	GCTCC	1 cut(s)	638
Lsp1109I	GCAGC	4 cut(s)	328, 350, 451, 519
LweI	GCATC	3 cut(s)	341, 799, 979
MaeI	CTAG	4 cut(s)	78, 297, 446, 803
MaeIII	GTNAC	1 cut(s)	886
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MboII	GAAGA	4 cut(s)	225, 711, 814, 932
MfeI	CAATTG	1 cut(s)	371
MlsI	TGGCCA	2 cut(s)	164, 927
MluNI	TGGCCA	2 cut(s)	164, 927
MlyI	GAGTC	2 cut(s)	113, 824
MmeI	TCCRAC	3 cut(s)	246, 478, 1025
MnlI	CCTC	8 cut(s)	12, 291, 293, 349, 448, 568, 909, 1066
Mox20I	TGGCCA	2 cut(s)	164, 927
Mph1103I	ATGCAT	2 cut(s)	488, 994
MroNI	GCCGGC	1 cut(s)	1083
MroXI	GAANNNNTTC	1 cut(s)	217
MscI	TGGCCA	2 cut(s)	164, 927
MseI	TTAA	3 cut(s)	324, 522, 1099
Msp20I	TGGCCA	2 cut(s)	164, 927
MspA1I	CMGCKG	2 cut(s)	341, 616
MspI	CCGG	4 cut(s)	210, 555, 572, 1084
MspR9I	CCNGG	2 cut(s)	572, 848
MunI	CAATTG	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	848
MwoI	GCNNNNNNNGC	8 cut(s)	14, 338, 1016, 1025, 1034, 1043, 1052, 1061
NaeI	GCCGGC	1 cut(s)	1085
NciI	CCSGG	1 cut(s)	572
NdeII	GATC	1 cut(s)	379
NgoMIV	GCCGGC	1 cut(s)	1083
NlaIII	CATG	4 cut(s)	538, 726, 939, 960
NsiI	ATGCAT	2 cut(s)	488, 994
NspI	RCATGY	1 cut(s)	939
PceI	AGGCCT	1 cut(s)	1055
PciI	ACATGT	1 cut(s)	935
PdiI	GCCGGC	1 cut(s)	1085
PdmI	GAANNNNTTC	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	587
PfoI	TCCNGGA	1 cut(s)	846
PkrI	GCNGC	4 cut(s)	340, 343, 466, 509
PleI	GAGTC	2 cut(s)	113, 824
PpsI	GAGTC	2 cut(s)	113, 824
PscI	ACATGT	1 cut(s)	935
Psp6I	CCWGG	1 cut(s)	846
PspGI	CCWGG	1 cut(s)	846
PspPI	GGNCC	2 cut(s)	203, 457
PstI	CTGCAG	1 cut(s)	340
PstNI	CAGNNNCTG	1 cut(s)	344
PvuII	CAGCTG	2 cut(s)	341, 616
RsaI	GTAC	3 cut(s)	312, 629, 729
RsaNI	GTAC	3 cut(s)	311, 628, 728
SalI	GTCGAC	1 cut(s)	191
SaqAI	TTAA	3 cut(s)	324, 522, 1099
SatI	GCNGC	4 cut(s)	339, 342, 465, 508
Sau3AI	GATC	1 cut(s)	379
Sau96I	GGNCC	2 cut(s)	203, 457
SchI	GAGTC	2 cut(s)	113, 824
ScrFI	CCNGG	2 cut(s)	572, 848
SfaNI	GCATC	3 cut(s)	341, 799, 979
SfcI	CTRYAG	1 cut(s)	336
SinI	GGWCC	2 cut(s)	203, 457
SmlI	CTYRAG	2 cut(s)	429, 770
SmoI	CTYRAG	2 cut(s)	429, 770
SseBI	AGGCCT	1 cut(s)	1055
SsiI	CCGC	1 cut(s)	8
SspMI	CTAG	4 cut(s)	78, 297, 446, 803
StuI	AGGCCT	1 cut(s)	1055
StyD4I	CCNGG	2 cut(s)	570, 846
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	3 cut(s)	238, 424, 608
TaqI	TCGA	2 cut(s)	192, 1074
TatI	WGTACW	2 cut(s)	310, 627
TfiI	GAWTC	1 cut(s)	587
Tru1I	TTAA	3 cut(s)	324, 522, 1099
Tru9I	TTAA	3 cut(s)	324, 522, 1099
TscAI	CASTG	1 cut(s)	429
TseI	GCWGC	4 cut(s)	338, 341, 464, 507
TspDTI	ATGAA	7 cut(s)	97, 265, 523, 705, 711, 801, 986
TspGWI	ACGGA	2 cut(s)	28, 240
TspRI	CASTG	1 cut(s)	429
VpaK11BI	GGWCC	2 cut(s)	203, 457
XapI	RAATTY	2 cut(s)	753, 788
XceI	RCATGY	1 cut(s)	939
XmiI	GTMKAC	2 cut(s)	192, 828
XmnI	GAANNNNTTC	1 cut(s)	217
XspI	CTAG	4 cut(s)	78, 297, 446, 803
Zsp2I	ATGCAT	2 cut(s)	488, 994

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.