Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014308

Physical Location & Seq

Genomic Coordinates Forward (+)

18528267 .. 18530501

Gene Structure 2235 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G45670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGCGAGAATGAGTTTGATGATCATGATGATTATGGTTGCTGTGACCATGATTAACATTGCTAAGAGTGATCCCATTGCACCATGTTACTTCATATTTGGTGACTCTTTGGTTGATAATGGCAACAATAATCAGCTTCAGTCATTAGCTAGAGCTAATTACTTTCCTTACGGTATTGACTTTGCTGCCGGTCCAACCGGTCGGTTTAGCAACGGCTTAACCACTGTCGATGTTATCGCTCAGCTTTTGGGTTTCGAGGACTACATTACACCTTACGCTTCTGCAAGAGGACAAGACATTCTCCGAGGAGTTAACTATGCTTCCGCTGCTGCCGGAATCCGAGACGAAACCGGCAGACAATTGGGAGGTCGAATAGCATTTGCAGGGCAAGTAGCAAATCACGTGAACACTGTGTCACAAGTAGTGAACATACTTGGTGATCAAAACGAAGCCTCGAATTACCTCAGCAAATGCATTTACTCTATCGGATTAGGCAGTAACGATTATCTTAACAACTACTTCATGCCTACTTTTTACTCTACCGGTAACCAGTTCTCCCCCGAATCCTATGCCGACGATCTCGTTGCCCGTTACACCGAACAACTCAGGGTACTGTATACCAATGGAGCGAGGAAGTTTGCGTTGATAGGAGTCGGGGCAATCGGTTGCAGCCCGAACGAGCTAGCTCAAAACAGCAGAGACGGAAGAACGTGTGACGAAAGAATCAACTCAGCGAACAGAATCTTTAACAGCAAACTCATATCTATAGTCGACGCTTTTAACCAGAACACACCAGATGCAAAATTCACTTACATCAACGCTTATGGCATCTTCCAAGACATTATTACAAACCCTGCTCGCTACGGGTTTAGAGTGACAAATGCAGGATGTTGTGGAGTTGGGAGGAACAATGGACAGATAACTTGTCTTCCAGGTCAAGCACCATGTCTAAATAGGAATGAGTATGTGTTTTGGGATGCGTTTCATCCCGGTGAAGCTGCGAATATTGTTATTGGAAGACGATCTTTTAAGCGAGAAGCTGCTTCTGATGCTCATCCTTATGATATTCAGCAGCTAGCATCTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0030312 GO:0031976 GO:0031984 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

362

Amino Acids

39.58

Weight (kDa)

5.96

Isoelectric Point (pI)

28.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	30 - 340	1.1e-36	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29670 AT1G29670 AT5G45670
fragaria_vesca	FvH4_3g06610
malus_domestica	MD00G1093600.v1.1 MD10G1270600.v1.1
prunus_persica	Prupe.4G071100_v2.0.a1
pyrus_communis	pycom05g27060 pycom10g22640
rosa_chinensis	RchiOBHm_Chr5g0012531
rosa_laevigata	RLG00000031922
rosa_multiflora	Rmu_sc0001889.1_g000034
rosa_roxburghii	Rroxscaffold_1G00064160
rosa_rugosa	Rorug05G0002200
rosa_samantha	Rh5AG096200 Rh5CG105300
rosa_wichuraiana	Rw5G008420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	617, 771
AciI	CCGC	1 cut(s)	324
AclWI	GGATC	1 cut(s)	65
AcsI	RAATTY	1 cut(s)	803
AcuI	CTGAAG	1 cut(s)	122
AcvI	CACGTG	1 cut(s)	403
AfaI	GTAC	1 cut(s)	612
AflIII	ACRYGT	1 cut(s)	710
AgeI	ACCGGT	2 cut(s)	197, 542
AjnI	CCWGG	1 cut(s)	931
AluBI	AGCT	9 cut(s)	136, 149, 155, 244, 682, 686, 998, 1040, 1075
AluI	AGCT	9 cut(s)	136, 149, 155, 244, 682, 686, 998, 1040, 1075
Alw26I	GTCTC	2 cut(s)	336, 693
AlwI	GGATC	1 cut(s)	65
ApeKI	GCWGC	7 cut(s)	185, 326, 329, 669, 998, 1040, 1072
ApoI	RAATTY	1 cut(s)	803
AsiGI	ACCGGT	2 cut(s)	197, 542
AspS9I	GGNCC	1 cut(s)	191
AsuC2I	CCSGG	1 cut(s)	990
AsuHPI	GGTGA	3 cut(s)	113, 449, 1004
AsuNHI	GCTAGC	2 cut(s)	682, 1075
AvaII	GGWCC	1 cut(s)	191
BbrPI	CACGTG	1 cut(s)	403
BbsI	GAAGAC	2 cut(s)	920, 1024
BbvCI	CCTCAGC	1 cut(s)	464
BbvI	GCAGC	7 cut(s)	172, 313, 316, 681, 985, 1027, 1084
BceAI	ACGGC	1 cut(s)	229
BcgI	CGANNNNNNTGC	4 cut(s)	551, 566, 585, 600
BciT130I	CCWGG	1 cut(s)	933
BclI	TGATCA	2 cut(s)	21, 439
BcnI	CCSGG	1 cut(s)	990
BcoDI	GTCTC	2 cut(s)	336, 693
BfaI	CTAG	3 cut(s)	150, 683, 1076
BfmI	CTRYAG	1 cut(s)	765
BisI	GCNGC	7 cut(s)	186, 327, 330, 670, 999, 1041, 1073
BlpI	GCTNAGC	1 cut(s)	240
BlsI	GCNGC	7 cut(s)	187, 328, 331, 671, 1000, 1042, 1074
Bme1390I	CCNGG	2 cut(s)	933, 990
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	191
BmrFI	CCNGG	2 cut(s)	933, 990
BmsI	GCATC	4 cut(s)	787, 837, 967, 1039
BmtI	GCTAGC	2 cut(s)	686, 1079
BpiI	GAAGAC	2 cut(s)	920, 1024
Bpu10I	CCTNAGC	1 cut(s)	464
Bpu1102I	GCTNAGC	1 cut(s)	240
BpuMI	CCSGG	1 cut(s)	990
BsaAI	YACGTR	1 cut(s)	403
BsaBI	GATNNNNATC	1 cut(s)	1053
BsaJI	CCNNGG	1 cut(s)	304
BsaWI	WCCGGW	2 cut(s)	197, 542
BsaXI	ACNNNNNCTCC	2 cut(s)	539, 569
Bse118I	RCCGGY	4 cut(s)	188, 197, 350, 542
Bse1I	ACTGG	1 cut(s)	550
Bse3DI	GCAATG	2 cut(s)	57, 75
Bse8I	GATNNNNATC	1 cut(s)	1053
BseBI	CCWGG	1 cut(s)	933
BseDI	CCNNGG	1 cut(s)	304
BseGI	GGATG	4 cut(s)	893, 982, 985, 1054
BseJI	GATNNNNATC	1 cut(s)	1053
BseMI	GCAATG	2 cut(s)	57, 75
BseMII	CTCAG	4 cut(s)	254, 478, 619, 744
BseNI	ACTGG	1 cut(s)	550
BseRI	GAGGAG	1 cut(s)	321
BseXI	GCAGC	7 cut(s)	172, 313, 316, 681, 985, 1027, 1084
Bsh1285I	CGRYCG	1 cut(s)	202
BshTI	ACCGGT	2 cut(s)	197, 542
BsiEI	CGRYCG	1 cut(s)	202
BsiSI	CCGG	6 cut(s)	189, 198, 333, 351, 543, 990
BsmAI	GTCTC	2 cut(s)	336, 693
BsmBI	CGTCTC	2 cut(s)	336, 693
Bsp143I	GATC	5 cut(s)	21, 70, 439, 577, 1022
Bsp1720I	GCTNAGC	1 cut(s)	240
BspACI	CCGC	1 cut(s)	324
BspCNI	CTCAG	4 cut(s)	253, 477, 618, 743
BspHI	TCATGA	1 cut(s)	24
BspOI	GCTAGC	2 cut(s)	686, 1079
BspPI	GGATC	1 cut(s)	65
BsrDI	GCAATG	2 cut(s)	57, 75
BsrFI	RCCGGY	4 cut(s)	188, 197, 350, 542
BsrI	ACTGG	1 cut(s)	550
BssAI	RCCGGY	4 cut(s)	188, 197, 350, 542
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	5 cut(s)	21, 70, 439, 577, 1022
BssNAI	GTATAC	1 cut(s)	618
Bst1107I	GTATAC	1 cut(s)	618
Bst2UI	CCWGG	1 cut(s)	933
Bst4CI	ACNGT	4 cut(s)	173, 226, 412, 615
BstBAI	YACGTR	1 cut(s)	403
BstC8I	GCNNGC	3 cut(s)	684, 859, 1077
BstDEI	CTNAG	5 cut(s)	63, 240, 464, 605, 730
BstEII	GGTNACC	1 cut(s)	545
BstF5I	GGATG	4 cut(s)	893, 982, 985, 1054
BstKTI	GATC	5 cut(s)	24, 73, 442, 580, 1025
BstMAI	GTCTC	2 cut(s)	336, 693
BstMBI	GATC	5 cut(s)	21, 70, 439, 577, 1022
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	2 cut(s)	326, 1049
BstNI	CCWGG	1 cut(s)	933
BstPI	GGTNACC	1 cut(s)	545
BstSCI	CCNGG	2 cut(s)	931, 988
BstSFI	CTRYAG	1 cut(s)	765
BstV1I	GCAGC	7 cut(s)	172, 313, 316, 681, 985, 1027, 1084
BstV2I	GAAGAC	2 cut(s)	920, 1024
BstZ17I	GTATAC	1 cut(s)	618
BtsCI	GGATG	4 cut(s)	893, 982, 985, 1054
BtsIMutI	CAGTG	2 cut(s)	222, 408
Cac8I	GCNNGC	3 cut(s)	684, 859, 1077
CciI	TCATGA	1 cut(s)	24
Cfr10I	RCCGGY	4 cut(s)	188, 197, 350, 542
Cfr13I	GGNCC	1 cut(s)	191
CseI	GACGC	1 cut(s)	782
Csp6I	GTAC	1 cut(s)	611
CspAI	ACCGGT	2 cut(s)	197, 542
CviAII	CATG	5 cut(s)	25, 49, 84, 523, 945
CviQI	GTAC	1 cut(s)	611
DdeI	CTNAG	5 cut(s)	63, 240, 464, 605, 730
DpnI	GATC	5 cut(s)	23, 72, 441, 579, 1024
DpnII	GATC	5 cut(s)	21, 70, 439, 577, 1022
Eco47I	GGWCC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	122
Eco72I	CACGTG	1 cut(s)	403
Eco91I	GGTNACC	1 cut(s)	545
EcoO65I	GGTNACC	1 cut(s)	545
EcoRII	CCWGG	1 cut(s)	931
EcoT22I	ATGCAT	1 cut(s)	476
Esp3I	CGTCTC	2 cut(s)	336, 693
FaeI	CATG	5 cut(s)	28, 52, 87, 526, 948
FalI	AAGNNNNNCTT	2 cut(s)	1009, 1041
FatI	CATG	5 cut(s)	24, 48, 83, 522, 944
FbaI	TGATCA	2 cut(s)	21, 439
FblI	GTMKAC	2 cut(s)	617, 771
Fnu4HI	GCNGC	7 cut(s)	186, 327, 330, 670, 999, 1041, 1073
FokI	GGATG	4 cut(s)	900, 972, 989, 1041
Fsp4HI	GCNGC	7 cut(s)	186, 327, 330, 670, 999, 1041, 1073
FspBI	CTAG	3 cut(s)	150, 683, 1076
GluI	GCNGC	7 cut(s)	186, 327, 330, 670, 999, 1041, 1073
HapII	CCGG	6 cut(s)	189, 198, 333, 351, 543, 990
HgaI	GACGC	1 cut(s)	782
Hin1II	CATG	5 cut(s)	28, 52, 87, 526, 948
HincII	GTYRAC	2 cut(s)	313, 772
HindII	GTYRAC	2 cut(s)	313, 772
HinfI	GANTC	6 cut(s)	104, 336, 563, 651, 723, 741
HpaI	GTTAAC	1 cut(s)	313
HpaII	CCGG	6 cut(s)	189, 198, 333, 351, 543, 990
HphI	GGTGA	3 cut(s)	113, 449, 1004
Hpy166II	GTNNAC	5 cut(s)	313, 406, 427, 618, 772
Hpy188I	TCNGA	4 cut(s)	305, 341, 488, 1048
Hpy188III	TCNNGA	1 cut(s)	25
Hpy8I	GTNNAC	5 cut(s)	313, 406, 427, 618, 772
Hpy99I	CGWCG	2 cut(s)	578, 776
HpyCH4III	ACNGT	4 cut(s)	173, 226, 412, 615
HpyCH4IV	ACGT	2 cut(s)	402, 710
HpyCH4V	TGCA	7 cut(s)	80, 284, 383, 474, 669, 800, 884
HpyF10VI	GCNNNNNNNGC	2 cut(s)	326, 1049
HpyF3I	CTNAG	5 cut(s)	63, 240, 464, 605, 730
HpySE526I	ACGT	2 cut(s)	402, 710
Hsp92II	CATG	5 cut(s)	28, 52, 87, 526, 948
Ksp22I	TGATCA	2 cut(s)	21, 439
KspAI	GTTAAC	1 cut(s)	313
Kzo9I	GATC	5 cut(s)	21, 70, 439, 577, 1022
LmnI	GCTCC	1 cut(s)	626
Lsp1109I	GCAGC	7 cut(s)	172, 313, 316, 681, 985, 1027, 1084
LweI	GCATC	4 cut(s)	787, 837, 967, 1039
MaeI	CTAG	3 cut(s)	150, 683, 1076
MaeII	ACGT	2 cut(s)	402, 710
MaeIII	GTNAC	9 cut(s)	43, 86, 101, 414, 497, 545, 590, 713, 874
MalI	GATC	5 cut(s)	23, 72, 441, 579, 1024
MboI	GATC	5 cut(s)	21, 70, 439, 577, 1022
MboII	GAAGA	4 cut(s)	717, 823, 920, 1029
MfeI	CAATTG	1 cut(s)	359
MluCI	AATT	4 cut(s)	157, 359, 457, 803
MlyI	GAGTC	2 cut(s)	98, 660
MmeI	TCCRAC	1 cut(s)	218
MnlI	CCTC	8 cut(s)	250, 281, 299, 359, 463, 473, 624, 897
Mph1103I	ATGCAT	1 cut(s)	476
MseI	TTAA	7 cut(s)	54, 218, 312, 510, 747, 780, 1029
MslI	CAYNNNNRTG	2 cut(s)	990, 1059
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	6 cut(s)	189, 198, 333, 351, 543, 990
MspR9I	CCNGG	2 cut(s)	933, 990
MunI	CAATTG	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	933
MwoI	GCNNNNNNNGC	2 cut(s)	326, 1049
NciI	CCSGG	1 cut(s)	990
NdeII	GATC	5 cut(s)	21, 70, 439, 577, 1022
NheI	GCTAGC	2 cut(s)	682, 1075
NlaIII	CATG	5 cut(s)	28, 52, 87, 526, 948
NmuCI	GTSAC	5 cut(s)	43, 101, 414, 713, 874
NsiI	ATGCAT	1 cut(s)	476
PagI	TCATGA	1 cut(s)	24
PfeI	GAWTC	4 cut(s)	336, 563, 723, 741
PinAI	ACCGGT	2 cut(s)	197, 542
PkrI	GCNGC	7 cut(s)	187, 328, 331, 671, 1000, 1042, 1074
PleI	GAGTC	2 cut(s)	98, 659
PmaCI	CACGTG	1 cut(s)	403
PmlI	CACGTG	1 cut(s)	403
PpsI	GAGTC	2 cut(s)	98, 659
Ppu21I	YACGTR	1 cut(s)	403
Psp6I	CCWGG	1 cut(s)	931
PspCI	CACGTG	1 cut(s)	403
PspEI	GGTNACC	1 cut(s)	545
PspGI	CCWGG	1 cut(s)	931
PspPI	GGNCC	1 cut(s)	191
RsaI	GTAC	1 cut(s)	612
RsaNI	GTAC	1 cut(s)	611
RseI	CAYNNNNRTG	2 cut(s)	990, 1059
SalI	GTCGAC	1 cut(s)	770
SaqAI	TTAA	7 cut(s)	54, 218, 312, 510, 747, 780, 1029
SatI	GCNGC	7 cut(s)	186, 327, 330, 670, 999, 1041, 1073
Sau3AI	GATC	5 cut(s)	21, 70, 439, 577, 1022
Sau96I	GGNCC	1 cut(s)	191
SchI	GAGTC	2 cut(s)	98, 660
ScrFI	CCNGG	2 cut(s)	933, 990
SfaNI	GCATC	4 cut(s)	787, 837, 967, 1039
SfcI	CTRYAG	1 cut(s)	765
SinI	GGWCC	1 cut(s)	191
SmiMI	CAYNNNNRTG	2 cut(s)	990, 1059
Sse9I	AATT	4 cut(s)	157, 359, 457, 803
SsiI	CCGC	1 cut(s)	324
SspI	AATATT	1 cut(s)	1006
SspMI	CTAG	3 cut(s)	150, 683, 1076
StyD4I	CCNGG	2 cut(s)	931, 988
TaaI	ACNGT	4 cut(s)	173, 226, 412, 615
TaiI	ACGT	2 cut(s)	405, 713
TaqI	TCGA	5 cut(s)	228, 255, 370, 455, 771
TasI	AATT	4 cut(s)	157, 359, 457, 803
TfiI	GAWTC	4 cut(s)	336, 563, 723, 741
Tru1I	TTAA	7 cut(s)	54, 218, 312, 510, 747, 780, 1029
Tru9I	TTAA	7 cut(s)	54, 218, 312, 510, 747, 780, 1029
TscAI	CASTG	2 cut(s)	229, 415
TseFI	GTSAC	5 cut(s)	43, 101, 414, 713, 874
TseI	GCWGC	7 cut(s)	185, 326, 329, 669, 998, 1040, 1072
Tsp45I	GTSAC	5 cut(s)	43, 101, 414, 713, 874
TspDTI	ATGAA	3 cut(s)	82, 511, 974
TspGWI	ACGGA	1 cut(s)	717
TspRI	CASTG	2 cut(s)	229, 415
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	1 cut(s)	803
XmiI	GTMKAC	2 cut(s)	617, 771
XspI	CTAG	3 cut(s)	150, 683, 1076
Zsp2I	ATGCAT	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.