Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0014308

Physical Location & Seq

Genomic Coordinates Reverse (-)

9094200 .. 9097155

Gene Structure 2956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G008420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGTGGGAATGGTGAAGAAAATGTGGGTGGTGGTTTTGGTATTGAACTTGGGGTGGTGCAATATTGGGGCAAGAGCTGAGCCACAAGTGCCTTGCTATTTCATTTTTGGGGATTCTTTGGTTGATAATGGCAACAACAACCAGCTTCAGTCCTTGGCTAGAGCTGATTACTTGCCTTATGGGATCGACTTCGGAGGACCAACTGGAAGATTTTCCAATGGGAAAACTACTGTTGATGTTGTTGCTGAGCTTTTGGGTTTTGATGATTACATTCCACCCTATGCAACTGCCAGAGGCCAACAAATACTCGGAGGAGTAAACTTTGCATCTGCAGCTGCTGGAATTAGAGAGGAAACTGGACGCCAACTGGGCGGTCGGATTACGTTTAGTGGTCAGGTAAGGAATTACCAAAACACAGTTTCCGAAGTGGTAAACTTGCTAGGAGATGAGGACACAGCTGCAAATTATCTGGCCAAATGCATATACTCTATTGGATTAGGCAGCAACGACTACCTTAACAACTATTTTATGCCCCAATATTACAACACCGGAAGTCAATACACTCCGGAGGAATATGCTACTTCTCTTATTCAGGATTACAGCCAGCAACTACGGCTTTTGTACAATTATGGTGCAAGGAAGGTTGTGTTGTTTGGAATTGGTCAAGTAGGTTGCAGTCCAAGTGAATTGGCTCAAAATAGCCCAGATGGAAATACATGCGTCGACAAGATAAACTCTGCAAACCAAATCTTCAATGGCAAGCTCAAGGCCCTTGCCAATGAGTTCAACACTAATTTCCCAGATGGAAGATTTATCTTCATAGACTCCTATGGCATTTTTGAGGACATAGTAAAAAGCCCAGCACAATACGGATTTACGAATATAAATACAGGATGCTGTGGGGTGGGGAGGAACAATGGCCAAATCACATGTCTTCCTTACCAAACTCCTTGTTCAAATCGTAACGAGTATCTGTTTTGGGATGCATTCCATCCCACTGAAGCTGGAAATGCTGTGGTTGCTAGGAGATCATACAATGCCGTTCGTGCATCCGATGCTTACCCAGTTGATATAGCCAACCTAGCTGCGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0030312 GO:0031976 GO:0031984 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

364

Amino Acids

39.84

Weight (kDa)

4.87

Isoelectric Point (pI)

27.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	33 - 343	3.2e-40	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29670 AT1G29670 AT5G45670
fragaria_vesca	FvH4_3g06610
malus_domestica	MD00G1093600.v1.1 MD10G1270600.v1.1
prunus_persica	Prupe.4G071100_v2.0.a1
pyrus_communis	pycom05g27060 pycom10g22640
rosa_chinensis	RchiOBHm_Chr5g0012531
rosa_laevigata	RLG00000031922
rosa_multiflora	Rmu_sc0001889.1_g000034
rosa_roxburghii	Rroxscaffold_1G00064160
rosa_rugosa	Rorug05G0002200
rosa_samantha	Rh5AG096200 Rh5CG105300
rosa_wichuraiana	Rw5G008420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	723
AccIII	TCCGGA	1 cut(s)	565
AciI	CCGC	1 cut(s)	372
AclWI	GGATC	1 cut(s)	191
AcoI	YGGCCR	2 cut(s)	471, 919
AcuI	CTGAAG	2 cut(s)	131, 1020
AcyI	GRCGYC	1 cut(s)	361
AfaI	GTAC	1 cut(s)	623
AflIII	ACRYGT	1 cut(s)	929
AgsI	TTSAA	4 cut(s)	46, 754, 787, 957
AluBI	AGCT	9 cut(s)	77, 145, 164, 250, 335, 458, 763, 1004, 1085
AluI	AGCT	9 cut(s)	77, 145, 164, 250, 335, 458, 763, 1004, 1085
AlwI	GGATC	1 cut(s)	191
AlwNI	CAGNNNCTG	1 cut(s)	338
Aor13HI	TCCGGA	1 cut(s)	565
AoxI	GGCC	4 cut(s)	295, 471, 768, 919
ApeKI	GCWGC	5 cut(s)	332, 335, 458, 501, 1085
ArsI	GACNNNNNNTTYG	2 cut(s)	916, 948
Asp700I	GAANNNNTTC	1 cut(s)	211
AspLEI	GCGC	1 cut(s)	1090
AspS9I	GGNCC	2 cut(s)	197, 769
AsuHPI	GGTGA	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	197
BalI	TGGCCA	2 cut(s)	473, 921
BbsI	GAAGAC	1 cut(s)	926
BbvI	GCAGC	5 cut(s)	322, 344, 445, 513, 1072
BccI	CCATC	3 cut(s)	701, 797, 999
BceAI	ACGGC	2 cut(s)	629, 1025
BfaI	CTAG	5 cut(s)	159, 440, 1023, 1082, 1093
BfmI	CTRYAG	1 cut(s)	330
BglI	GCCNNNNNGGC	1 cut(s)	369
BisI	GCNGC	5 cut(s)	333, 336, 459, 502, 1086
BlpI	GCTNAGC	2 cut(s)	78, 246
BlsI	GCNGC	5 cut(s)	334, 337, 460, 503, 1087
Bme18I	GGWCC	1 cut(s)	197
BmgT120I	GGNCC	2 cut(s)	197, 769
BmrI	ACTGGG	2 cut(s)	377, 1058
BmsI	GCATC	5 cut(s)	335, 884, 973, 1045, 1058
BmuI	ACTGGG	2 cut(s)	377, 1058
BpiI	GAAGAC	1 cut(s)	926
Bpu1102I	GCTNAGC	2 cut(s)	78, 246
BpuEI	CTTGAG	1 cut(s)	749
BsaHI	GRCGYC	1 cut(s)	361
BsaJI	CCNNGG	1 cut(s)	153
BsaWI	WCCGGW	2 cut(s)	548, 565
Bse1I	ACTGG	4 cut(s)	208, 361, 372, 1064
BseAI	TCCGGA	1 cut(s)	565
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	4 cut(s)	899, 988, 991, 1049
BseMII	CTCAG	2 cut(s)	69, 237
BseNI	ACTGG	4 cut(s)	208, 361, 372, 1064
BseRI	GAGGAG	1 cut(s)	327
BseXI	GCAGC	5 cut(s)	322, 344, 445, 513, 1072
BseYI	CCCAGC	1 cut(s)	859
Bsh1285I	CGRYCG	1 cut(s)	376
BshFI	GGCC	4 cut(s)	297, 473, 770, 921
BsiEI	CGRYCG	1 cut(s)	376
BsiSI	CCGG	2 cut(s)	549, 566
BsmI	GAATGC	1 cut(s)	986
BsnI	GGCC	4 cut(s)	297, 473, 770, 921
Bsp13I	TCCGGA	1 cut(s)	565
Bsp1407I	TGTACA	1 cut(s)	621
Bsp143I	GATC	2 cut(s)	183, 1028
Bsp1720I	GCTNAGC	2 cut(s)	78, 246
BspACI	CCGC	1 cut(s)	372
BspANI	GGCC	4 cut(s)	297, 473, 770, 921
BspCNI	CTCAG	2 cut(s)	70, 238
BspEI	TCCGGA	1 cut(s)	565
BspMAI	CTGCAG	1 cut(s)	334
BspPI	GGATC	1 cut(s)	191
BsrGI	TGTACA	1 cut(s)	621
BsrI	ACTGG	4 cut(s)	208, 361, 372, 1064
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	2 cut(s)	183, 1028
BssNI	GRCGYC	1 cut(s)	361
BssT1I	CCWWGG	1 cut(s)	153
Bst4CI	ACNGT	2 cut(s)	232, 418
BstACI	GRCGYC	1 cut(s)	361
BstAPI	GCANNNNNTGC	1 cut(s)	1055
BstAUI	TGTACA	1 cut(s)	621
BstC8I	GCNNGC	2 cut(s)	605, 761
BstDEI	CTNAG	2 cut(s)	78, 246
BstF5I	GGATG	4 cut(s)	899, 988, 991, 1049
BstHHI	GCGC	1 cut(s)	1090
BstKTI	GATC	2 cut(s)	186, 1031
BstMBI	GATC	2 cut(s)	183, 1028
BstMCI	CGRYCG	1 cut(s)	376
BstMWI	GCNNNNNNNGC	9 cut(s)	88, 332, 369, 613, 1010, 1019, 1046, 1055, 1082
BstNSI	RCATGY	2 cut(s)	720, 933
BstSFI	CTRYAG	1 cut(s)	330
BstV1I	GCAGC	5 cut(s)	322, 344, 445, 513, 1072
BstV2I	GAAGAC	1 cut(s)	926
BsuRI	GGCC	4 cut(s)	297, 473, 770, 921
BtsCI	GGATG	4 cut(s)	899, 988, 991, 1049
BtsIMutI	CAGTG	1 cut(s)	996
Cac8I	GCNNGC	2 cut(s)	605, 761
CaiI	CAGNNNCTG	1 cut(s)	338
CfoI	GCGC	1 cut(s)	1090
Cfr13I	GGNCC	2 cut(s)	197, 769
CseI	GACGC	2 cut(s)	369, 709
Csp6I	GTAC	1 cut(s)	622
CviAII	CATG	2 cut(s)	717, 930
CviQI	GTAC	1 cut(s)	622
DdeI	CTNAG	2 cut(s)	78, 246
DpnI	GATC	2 cut(s)	185, 1030
DpnII	GATC	2 cut(s)	183, 1028
EaeI	YGGCCR	2 cut(s)	471, 919
Eco130I	CCWWGG	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	197
Eco57I	CTGAAG	2 cut(s)	131, 1020
EcoO109I	RGGNCCY	1 cut(s)	769
EcoT14I	CCWWGG	1 cut(s)	153
EcoT22I	ATGCAT	2 cut(s)	482, 988
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	2 cut(s)	720, 933
FatI	CATG	2 cut(s)	716, 929
FblI	GTMKAC	1 cut(s)	723
Fnu4HI	GCNGC	5 cut(s)	333, 336, 459, 502, 1086
FokI	GGATG	4 cut(s)	906, 978, 995, 1036
Fsp4HI	GCNGC	5 cut(s)	333, 336, 459, 502, 1086
FspBI	CTAG	5 cut(s)	159, 440, 1023, 1082, 1093
GlaI	GCGC	1 cut(s)	1089
GluI	GCNGC	5 cut(s)	333, 336, 459, 502, 1086
GsaI	CCCAGC	1 cut(s)	863
HaeIII	GGCC	4 cut(s)	297, 473, 770, 921
HapII	CCGG	2 cut(s)	549, 566
HgaI	GACGC	2 cut(s)	369, 709
HhaI	GCGC	1 cut(s)	1090
Hin1I	GRCGYC	1 cut(s)	361
Hin1II	CATG	2 cut(s)	720, 933
Hin6I	GCGC	1 cut(s)	1088
HinP1I	GCGC	1 cut(s)	1088
HincII	GTYRAC	1 cut(s)	724
HindII	GTYRAC	1 cut(s)	724
HinfI	GANTC	2 cut(s)	113, 824
HpaII	CCGG	2 cut(s)	549, 566
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	3 cut(s)	319, 433, 724
Hpy188I	TCNGA	5 cut(s)	194, 311, 378, 424, 1054
Hpy188III	TCNNGA	2 cut(s)	566, 593
Hpy8I	GTNNAC	3 cut(s)	319, 433, 724
Hpy99I	CGWCG	1 cut(s)	725
HpyAV	CCTTC	1 cut(s)	634
HpyCH4III	ACNGT	2 cut(s)	232, 418
HpyCH4IV	ACGT	1 cut(s)	383
HpyF10VI	GCNNNNNNNGC	9 cut(s)	88, 332, 369, 613, 1010, 1019, 1046, 1055, 1082
HpyF3I	CTNAG	2 cut(s)	78, 246
HpySE526I	ACGT	1 cut(s)	383
Hsp92I	GRCGYC	1 cut(s)	361
Hsp92II	CATG	2 cut(s)	720, 933
HspAI	GCGC	1 cut(s)	1088
Kpn2I	TCCGGA	1 cut(s)	565
Kzo9I	GATC	2 cut(s)	183, 1028
Lsp1109I	GCAGC	5 cut(s)	322, 344, 445, 513, 1072
LweI	GCATC	5 cut(s)	335, 884, 973, 1045, 1058
MaeI	CTAG	5 cut(s)	159, 440, 1023, 1082, 1093
MaeII	ACGT	1 cut(s)	383
MaeIII	GTNAC	1 cut(s)	962
MalI	GATC	2 cut(s)	185, 1030
MboI	GATC	2 cut(s)	183, 1028
MboII	GAAGA	6 cut(s)	28, 219, 742, 808, 819, 926
MlsI	TGGCCA	2 cut(s)	473, 921
MluCI	AATT	7 cut(s)	342, 403, 463, 625, 657, 686, 793
MluNI	TGGCCA	2 cut(s)	473, 921
MlyI	GAGTC	1 cut(s)	818
MmeI	TCCRAC	1 cut(s)	356
MnlI	CCTC	8 cut(s)	188, 287, 305, 343, 442, 562, 835, 903
Mox20I	TGGCCA	2 cut(s)	473, 921
Mph1103I	ATGCAT	2 cut(s)	482, 988
MroI	TCCGGA	1 cut(s)	565
MroXI	GAANNNNTTC	1 cut(s)	211
MscI	TGGCCA	2 cut(s)	473, 921
MseI	TTAA	1 cut(s)	516
Msp20I	TGGCCA	2 cut(s)	473, 921
MspA1I	CMGCKG	2 cut(s)	335, 458
MspI	CCGG	2 cut(s)	549, 566
Mva1269I	GAATGC	1 cut(s)	986
MwoI	GCNNNNNNNGC	9 cut(s)	88, 332, 369, 613, 1010, 1019, 1046, 1055, 1082
NdeII	GATC	2 cut(s)	183, 1028
NlaIII	CATG	2 cut(s)	720, 933
NsiI	ATGCAT	2 cut(s)	482, 988
NspI	RCATGY	2 cut(s)	720, 933
PciI	ACATGT	1 cut(s)	929
PctI	GAATGC	1 cut(s)	986
PdmI	GAANNNNTTC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	113
PkrI	GCNGC	5 cut(s)	334, 337, 460, 503, 1087
PleI	GAGTC	1 cut(s)	818
PpsI	GAGTC	1 cut(s)	818
PscI	ACATGT	1 cut(s)	929
PspFI	CCCAGC	1 cut(s)	859
PspPI	GGNCC	2 cut(s)	197, 769
PstI	CTGCAG	1 cut(s)	334
PstNI	CAGNNNCTG	1 cut(s)	338
PvuII	CAGCTG	2 cut(s)	335, 458
RsaI	GTAC	1 cut(s)	623
RsaNI	GTAC	1 cut(s)	622
SalI	GTCGAC	1 cut(s)	722
SaqAI	TTAA	1 cut(s)	516
SatI	GCNGC	5 cut(s)	333, 336, 459, 502, 1086
Sau3AI	GATC	2 cut(s)	183, 1028
Sau96I	GGNCC	2 cut(s)	197, 769
SchI	GAGTC	1 cut(s)	818
SfaNI	GCATC	5 cut(s)	335, 884, 973, 1045, 1058
SfcI	CTRYAG	1 cut(s)	330
SinI	GGWCC	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	764
SmoI	CTYRAG	1 cut(s)	764
Sse9I	AATT	7 cut(s)	342, 403, 463, 625, 657, 686, 793
SsiI	CCGC	1 cut(s)	372
SspI	AATATT	2 cut(s)	64, 539
SspMI	CTAG	5 cut(s)	159, 440, 1023, 1082, 1093
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	2 cut(s)	232, 418
TaiI	ACGT	1 cut(s)	386
TaqI	TCGA	2 cut(s)	186, 723
TasI	AATT	7 cut(s)	342, 403, 463, 625, 657, 686, 793
TatI	WGTACW	1 cut(s)	621
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TscAI	CASTG	1 cut(s)	1003
TseI	GCWGC	5 cut(s)	332, 335, 458, 501, 1085
TspDTI	ATGAA	2 cut(s)	91, 808
TspGWI	ACGGA	1 cut(s)	885
TspRI	CASTG	1 cut(s)	1003
VpaK11BI	GGWCC	1 cut(s)	197
XceI	RCATGY	2 cut(s)	720, 933
XcmI	CCANNNNNNNNNTGG	1 cut(s)	752
XmiI	GTMKAC	1 cut(s)	723
XmnI	GAANNNNTTC	1 cut(s)	211
XspI	CTAG	5 cut(s)	159, 440, 1023, 1082, 1093
Zsp2I	ATGCAT	2 cut(s)	482, 988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.